Are you by any chance reading in a saved state file (e.g.
0-coot.state.scm)? The command set_default_bond_thickness is written in
the state file too, so this 'trumps' the preference file (maybe it
shouldnt?! up for debate).
B
[ coot 0.6.2-pre-1 2983 miramar via sbgrid ]
[ lucid lynx ]
i
Hi
I have noticed this too - I think it's because when you start coot with the
command line argument '--pdb filename.pdb' the pdb is read *before* coot.py,
coot-preferences.scm or ~/.coot so the bond preferences are only applied to the
next pdb opened from within coot.
Huw
--
Dr Huw
On 15/07/10 09:32, Huw Jenkins wrote:
I have noticed this too - I think it's because when you start coot with the
command line argument '--pdb filename.pdb' the pdb is read*before* coot.py,
coot-preferences.scm or ~/.coot so the bond preferences are only applied to the
next pdb opened from
Are alternate conformers supposed to show up in Ramachandran map? I
have a disordered loop which I modeled in two conformations and number
of outliers reported magically goes down. After clicking few times on
residues in the loop coot crashes but only when mouse pointer is moved
over to the map
On 15/07/10 15:54, Ed Pozharski wrote:
Are alternate conformers supposed to show up in Ramachandran map?
Yes.
I
have a disordered loop which I modeled in two conformations and number
of outliers reported magically goes down. After clicking few times on
residues in the loop coot crashes
When I display an electrostatic surface via extensions - representations, is
there a default flag I can toggle to display colourbyScalarValues in the Coot
viewing area, or is there some way that I can manually change the colouring
scheme so I can include it in a ray png?
Thank you for your
