Re: [COOT] Output maps

2010-07-21 Thread Andy Torelli
Kevin, Thank you for the reply. Your suggestion works well. As a follow-up question, I noticed that extending the map has changed the sigma level that must be chosen in PyMOL in order to match the view in COOT. Is this because the sigma level is defined based on the distribution

Re: [COOT] Output maps

2010-07-21 Thread Tim Gruene
Does unset normalize_ccp4_maps in pymol (http://www.pymolwiki.org/index.php/Normalize_ccp4_maps) overcome your problem? On Wed, Jul 21, 2010 at 11:01:20AM -0400, Andy Torelli wrote: I just realized it's the mapmask program. Documentation at: www.ccp4.ac.uk/dist/html/mapmask.html

Re: [COOT] sequence view not drawn all the way for long .pdb

2010-07-21 Thread Lepore, Bryan
At the end of June (this year) I saw and (hopefully) fixed a sequence view problem. i thought so too... That was rev 3016. Bryan wrote : [ coot 0.6.2-pre1 (miramar) via sbgrid ] rage the revision... 2983... on the plus side, this is what is meant by free software :^) thank you! -bryan