Hi all.
I'm running the version of coot as obtained from the ccp4.ac.uk
website last week, using OSX 10.5.8
My problem is this - I have what appear to be bound, ordered glycerols
in my maps - I want to import GOL and use the Ligand fitting
routines to help with this. I know I could do this by
Hi Dave,
I am slightly confused what you are actually doing. What do you mean by
'go to Libcheck to import a GOL'? The error message you get comes when
you open the 'Find Ligand' dialog and a map, protein, and/or ligand is
missing. There should be a more detailed message in the console output
Dave,
you certainly got the right end of the stick.
With respect to the error messages, I am not an expert on OSX, but it
looks to me that libcheck is not running properly (nothing to do with
Coot ;-) ) possibly because library paths (e.g. DYLD_LIBRARY_PATH) are
not set properly. Does
Bernard,
Libcheck seems to run fine from command line, and when called from the
ccp4i gui.
Curious.
Dave
David C. Briggs PhD
Father, Structural Biologist and Sceptic
University of Manchester E-mail:
david.c.bri...@manchester.ac.uk
Just to make sure:
was your initial attempt
File-Get Monomer
entered GOL and got an error message?
Tim
On Tue, Sep 28, 2010 at 12:30:43PM +0100, David Briggs wrote:
Bernard,
Libcheck seems to run fine from command line, and when called from the
ccp4i gui.
Curious.
Dave
I'm running coot 0.6.2-pre-1 Miramar (revision 3176) (Bill Scott version from
Fink) on Mac OS 10.6.4. Running the Add OXT command from the menu causes this
console message associated with crash:
DEBUG:: adding OXT to 0 A 256
INFO:: backup file
There seems to be a problem with coot web page at
http://www.biop.ox.ac.uk/coot/ -
Forbidden
You don't have permission to access /coot/ on this server.
Additionally, a 403 Forbidden error was encountered while trying to use an
ErrorDocument to handle the request.
Apache/2.0.53 (Linux/SUSE)
That (Tim's suggestion (wretched top posting)) will fail too I believe.
I also believe that Bernhard is right and the fix is to set
DYLD_LIBRARY_PATH to include (at a guess) /Applications/ccp4-6.1.13/lib
in the environment that invokes coot.
Alternatively, you could try
(let ((e
Thanks for the suggestion Paul - apols for my less than clear top post.
I am at home now and have tried to reproduce the error on my laptop -
but everything seems to work fine - I.e Get monomer [GOL] produces
co-ordinates for GOL at the pointer.
The only obvious difference is that I am running
