Re: [COOT] AW: one coot function

2012-01-26 Thread Ingo P. Korndoerfer
i think what gerhard ment to say is: it would be good if you always could explain a bit: - which part of the docu you have read - what you have tried - and what exactly did not work as decribed there this allows for more focussed answers and will help the programmers to improve their

[COOT] GThread-ERROR **: GThread system may only be initialized once.

2012-01-26 Thread Kay Diederichs
Dear Paul, we have happily been running the coot-Linux-x86_64-centos-5-gtk2-python build on our Scientific Linux 6.1 (RHEL-6 clone) machines. In particular, version 3607 has been working very well for quite some time now. Today I tried to upgrade to version 3965, using

Re: [COOT] GThread-ERROR **: GThread system may only be initialized once.

2012-01-26 Thread Paul Emsley
For the record, I hope/think that this is the same problem that is currently affecting the RedHat 5 builds too about which one or two others have contacted me. (We don't catch it because the automatic testing doesn't start the gui.) Paul. On 26/01/12 13:36, Bernhard Lohkamp wrote: Hi Kay,

Re: [COOT] how to optimize this part in order to have the green blobs disappear by Coot

2012-01-26 Thread William G. Scott
I would be a bit more concerned with the apparent lack of fit of the model to the map. It looks as if there is unoccupied side chain density, and possibly side chains that don't occupy density. It is hard to tell from a snapshot, but if this is the case, make sure everything is in register

Re: [COOT] GThread-ERROR **: GThread system may only be initialized once.

2012-01-26 Thread William G. Scott
On Jan 26, 2012, at 5:36 AM, Bernhard Lohkamp wrote: Hope this resolves the problem, B Seems to fix it on OS X -- Bill

Re: [COOT] Coot - 3D Anaglyph

2012-01-26 Thread Seth Harris
Ha. Now that's just about where I went running (comments in the other thread on ligand restraints...). See what I mean? Got to watch your step...next run I'll bring my red/green glasses... On Thu, Jan 26, 2012 at 12:06 PM, William G. Scott wgsc...@ucsc.edu wrote: Does coot do red/greed

Re: [COOT] New restraints, same name

2012-01-26 Thread Ezra Peisach
Personally, I like the ability to at least have a sanity check of the HETNAM with the dictionary - and if they do not match - do not use it... Assuming people provide a unique name in their dictionary - even if it is FOO1, FOO2, etc - this could catch the issue. This assumes that the refinement

Re: [COOT] New restraints, same name

2012-01-26 Thread Paul Emsley
On 26/01/12 21:48, Ezra Peisach wrote: Personally, I like the ability to at least have a sanity check of the HETNAM with the dictionary - and if they do not match - do not use it... Assuming people provide a unique name in their dictionary - even if it is FOO1, FOO2, etc - this could catch the