coot 0.8.9 crashes when reading cif file. I tried reading my G4P.cif file and
coot crashed with the following output:
** (coot-bin:167556): WARNING **: Widget not found:
cif_dictionary_file_selector_create_molecule_checkbutton
/home/xray/ccp4/ccp4-7.0/ccp4-7.0/bin/coot: line 288: 167556 Segmentation fault
(core dumped) $coot_bin "$@"
catching the crash log:
Gtk-Message: Failed to load module "canberra-gtk-module"
Gtk-Message: Failed to load module "pk-gtk-module"
coot-exe: "/home/xray/ccp4/ccp4-7.0/ccp4-7.0/libexec/coot-bin"
coot-version:
/home/xray/ccp4/ccp4-7.0/ccp4-7.0/libexec/coot-bin
platform:
/bin/uname
core: #f
No core file found. No debugging
Appears to crash for reading any cif restraints file.
kas
Kenneth A. Satyshur, M.S., Ph.D.
Senior Scientist,
Depts. Bacteriology, Bio Molecular Chemistry,
Neuroscience, Oncology, Carbone Cancer Center,
and the School of Pharmacy
University of Wisconsin-Madison
Madison, Wisconsin, 53706
608-215-5207
________________________________
From: Mailing list for users of COOT Crystallographic Software
<COOT@JISCMAIL.AC.UK> on behalf of Paul Emsley <pems...@mrc-lmb.cam.ac.uk>
Sent: Wednesday, March 21, 2018 8:42:49 PM
To: COOT@JISCMAIL.AC.UK
Subject: Re: set Coot download folder path in preferences
On 19/03/2018 17:34, Xiao Lei wrote:
>
> I would like to change the default Coot download folder path (let's say after
> fetch a pdb, Coot saved the
> pdb in the default download folder). I looked into the Edit--> Preferences in
> Coot and I could not find a
> place to change the PATH. How could I find this option in Coot?
>
You could create a link from your chosen directory to coot-download in the
current directory before coot
creates the directory.
Alternatively, you could use the dirty hack attached - edit it to set the
directory that you choose and put
this script in your ~/.coot-preferences directory.
Paul.
