Re: [COOT] what's the difference between ccp4's coot and a normal coot?

2018-06-07 Thread Paul Emsley
On 07/06/18 20:15, Murpholino Peligro wrote: > I was thinking that normal coot (i.e. the one installed from your > site) reads from the preferences from ~/.coot-preferences/coot.scm. > What about ccp4's coot where is located the respective coot.scm file? > Or both coots read this single file? > I

Re: [COOT] what's the difference between ccp4's coot and a normal coot?

2018-06-07 Thread Murpholino Peligro
Well. I was thinking that normal coot (i.e. the one installed from your site) reads from the preferences from ~/.coot-preferences/coot.scm. What about ccp4's coot where is located the respective coot.scm file? Or both coots read this single file? Thanks 2018-06-07 9:06 GMT-06:00 Paul Emsley : >

Re: [COOT] Duplicate sequence numbers

2018-06-07 Thread Jose Artur Brito
Hi Paul. On 07/06/18 18:06, Paul Emsley wrote: On 07/06/18 16:16, Jose Artur Brito wrote: Dear All, greetings from sunny Portugal! Greetings. I had problems in the past with duplicate sequence numbers, namely when I had very high resolution and three different conformations for the same re

Re: [COOT] Duplicate sequence numbers

2018-06-07 Thread Paul Emsley
On 07/06/18 16:16, Jose Artur Brito wrote: > Dear All, > > greetings from sunny Portugal! Greetings. > > I had problems in the past with duplicate sequence numbers, namely > when I had very high resolution and three different conformations for > the same residue. However, I am refining a structur

[COOT] Duplicate sequence numbers

2018-06-07 Thread Jose Artur Brito
Dear All, greetings from sunny Portugal! I had problems in the past with duplicate sequence numbers, namely when I had very high resolution and three different conformations for the same residue. However, I am refining a structure that, for historical (??) reasons has a few sequential residue

Re: [COOT] what's the difference between ccp4's coot and a normal coot?

2018-06-07 Thread Paul Emsley
On 07/06/2018 15:45, Murpholino Peligro wrote: Dear all. Putting this line (set-use-stroke-characters 1) into ~/.coot-preferences/coot.scm fixes the slowness. OK, interesting. I wonder where's the coot.scm file for ccp4's coot? I am not sure what this question means, please ask it another

Re: [COOT] what's the difference between ccp4's coot and a normal coot?

2018-06-07 Thread Murpholino Peligro
Dear all. Putting this line (set-use-stroke-characters 1) into ~/.coot-preferences/coot.scm fixes the slowness. I wonder where's the coot.scm file for ccp4's coot? Thank you very much. 2018-06-07 1:13 GMT-06:00 Tim Gruene : > Dear Murpholino, > > the slow shifting might be related to your gra

Re: [COOT] what's the difference between ccp4's coot and a normal coot?

2018-06-07 Thread Tim Gruene
Dear Murpholino, the slow shifting might be related to your graphics card (sorry if this has already been mentioned, I didn't read the entire thread). #> cat ~/.coot-preferences/coot.scm (set-use-stroke-characters 1) I guess that ccp4 coot set's this in their start-up script. In case you use