There is always a plan B. Yes set_display_lists_for_maps(0)
does work, but not in startup.py. One only needs to start coot, display map, and open scripting and enter the command above. Then the map will NOT disappear when going into stereo. Works fine. thanks kas Kenneth A. Satyshur, M.S., Ph.D. Senior Scientist, Department of Bacteriology: College of Ag and Life Sciences; Departments of Bio Molecular Chemistry, Neuroscience, Oncology, and Carbone Cancer Center: School of Medicine and Public Health; and the School of Pharmacy University of Wisconsin-Madison Madison, Wisconsin, 53706 608-215-5207 ________________________________ From: Mailing list for users of COOT Crystallographic Software <COOT@JISCMAIL.AC.UK> on behalf of Kenneth Satyshur <0000302c79f8ddd1-dmarc-requ...@jiscmail.ac.uk> Sent: Friday, April 3, 2020 6:18 PM To: COOT@JISCMAIL.AC.UK <COOT@JISCMAIL.AC.UK> Subject: Re: Where to find coot 0.9 and demos. Thanks Paul for the info on 0.9 coot. I will try to recompile it. However, I still get maps to disappear in coot 0.9 pre from ccpem. This does not happen in coot 0.8. I implemented the solution you suggested to make and entry into startup.py under ~/.coot-preferences set_display_lists_for_maps(0) but it does not work. The map still disappears when going to 3D stereo. I am using Centos/RHEL8.1. but everything else works, like ccp4 and pymol and chimera in 3D stereo. I took a screenshot of the coot window while in stereo and included it. Centos8 uses the Gnome display manager to do stereo, but because the developers are writing code for VR, stereo applies to the whole desktop and not just the window. In Mate desktop in centos 7.7, the stereo is in a window, i.e. only called by the terminal that the program is launched. VR requires the use of 'Composite' for X11 windowing, so that the whole desktop can be sent to VR headset. In Mate and 7.7, x11.org needs to disable;e composite in order for 3D stereo to work. I would just be happy with 3D stereo in coot 0.9 despite the problems with 'Desktop' stereo in the GDM. Unfortunately, Wayland is replacing X11 so in the future, 3D stereoscopic will probably be dead. I can elaborate on this more if anyone is interested. Thanks for your consideration. kas Kenneth A. Satyshur, M.S., Ph.D. Senior Scientist, Department of Bacteriology: College of Ag and Life Sciences; Departments of Bio Molecular Chemistry, Neuroscience, Oncology, and Carbone Cancer Center: School of Medicine and Public Health; and the School of Pharmacy University of Wisconsin-Madison Madison, Wisconsin, 53706 608-215-5207 ________________________________ From: Paul Emsley <pems...@mrc-lmb.cam.ac.uk> Sent: Thursday, April 2, 2020 3:39 PM To: Kenneth Satyshur <kenneth.satys...@wisc.edu>; COOT@JISCMAIL.AC.UK <COOT@JISCMAIL.AC.UK> Subject: Re: Where to find coot 0.9 and demos. On 02/04/2020 18:23, Kenneth Satyshur wrote: Thanks Paul for your tireless work on improving coot. It is a real gem of a graphics program! Thank you. I went to your web site and I see 0.8.9.2 prerelease. The source code for 0.9 is in the release directory. I was too tired to make binaries. My plan is to do that today. Is there another place to get coot 0.9? I know that ccpem has 0.9 in it and this is the one I am using on Linux RHEL7. CCPEM have 0.9-pre. They are pretty up to date - they don't have up-to-date tests, improper dihedrals or the new splash screen. But I guess that you can live without those for now. Works great (Except maps disappear when going into stereo). We discussed a fix for that on this list a week or so ago. Maybe it was CCP4BB.. Hmm. add this to ~/.coot-preferences/startup.py set_display_lists_for_maps(0) I have the 2019 May YouTube of your demo of 0.9 and in there you use several demo scripts, but I cannot find them either. Does anyone know another source? They are Keyboard mutate is in curlew demo-box-of-buttons-madrid.tar.gz is in the Files folder on the web site. gui-test-mol-tris.scm is secret/experimental :-) I doubt that CCPEM have that enabled. FWIW, I am completely rewriting the molecular triangles from scratch. Maps and licorice models have made good progress, but I have not yet been able to get ribbons integrated. I will be adding blog posts and I've just downloaded kdenlive so there will be official YouTube videos (the SBGrid one (I think that's the one you meant) was only for the attendees at the meeting in March last year :-)) Paul ________________________________ To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=COOT&A=1 ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=COOT&A=1
