Re: [COOT] Sphere refinement of interchain disulfides

2020-05-08 Thread Kevin Jude
Thanks Paul. Adding a restraint using the Restraints module sort of works. I select Restraints>Add Distance Restraint. I set it to 2.04, then click on the two SG atoms, but when I sphere refine, they settle at 2.31 Å apart. If I set the restraint as low as 0.75, then they will settle at 2.04 Å

[COOT] Startup Message 9.0 Ubuntu 16.04

2020-05-08 Thread Bernhard Rupp
Hi Fellows, not sure if this means anything or what the consequences might be (haven't found a problem as of yet) on Coot 0.9 EL Marina bay under Ubuntu 16.04 LTS I get following startup message: Gtk-Message: Failed to load module "overlay-scrollbar" Gtk-Message: Failed to load

Re: [COOT] Sphere refinement of interchain disulfides

2020-05-08 Thread Paul Emsley
On 08/05/2020 18:34, Kevin Jude wrote: I have a Fab with an interchain disulfide that I'd like to refine with sphere refine, but SG atoms repel each other. I have no trouble with intramolecular disulfides. Is there anything I can do to restrain this bond in coot? I'm using coot 0.9 for OS X

[COOT] Sphere refinement of interchain disulfides

2020-05-08 Thread Kevin Jude
I have a Fab with an interchain disulfide that I'd like to refine with sphere refine, but SG atoms repel each other. I have no trouble with intramolecular disulfides. Is there anything I can do to restrain this bond in coot? I'm using coot 0.9 for OS X from the CCPEM April 24 nightly release.