Hi Yong,
Keep the numbering continuous during the coot and Refmac cycles of building
and refinement. Refmac will have trouble keeping your model within the
electron density map with a break in the chain. So, for now, keep the
numbering continuous. Once you are satisfied with your model and ready
Re Refmac - I doubt it would unless you gave a specific LINK 26 C - 40 N
type L-peptide..
Not sure of the syntax..
Eleanor
On Sat, 25 Jul 2020 at 10:59, Paul Emsley wrote:
> On 24/07/2020 14:42, Yong Tang wrote:
> > Dear all, I have a loop truncation that could be explained as
> >
On 24/07/2020 14:42, Yong Tang wrote:
Dear all, I have a loop truncation that could be explained as
ProteinName(1-20)-GSSGSS-(40-500), where residues 21-39 was replaced
with a GSSGSS linker. Now the problem is in Coot, how do I define this
mutant in a way that I could still preserve the
To find variants of nucleic acids:
File -> Search monomer library
"guanosine 3' " (without the double quotes) -> Search
for example.
Once you know the 3-letter code/label_comp_id, you can use Replace
Residue. Maybe you want 3GP or 3DA.
Paul
On 24/07/2020 21:47, Yong Tang wrote:
Thank
On 25/07/2020 04:37, 陈喆 wrote:
I use coot to calculate my protein channel . it worked well .then I
want to generate a figure using pymol with small dots calculated by
coot. I noticed the output file hole_surface_dots.dat cannot work in
pymol. Is there any way to export the coordinates of
