Re: [COOT] Minor request selection status line

2022-08-08 Thread Paul Emsley
On 07/08/2022 21:56, Bernhard Rupp wrote: Dear Coot Developers, I have a minor suggestion: I view many open Marina Bay coots at the same time, and it would be helpful if the selection status line at the bottom would, instead of the somewhat uninformative (mol. no: x), display the name

Re: [COOT] Making bond

2022-08-08 Thread Paul Emsley
On 09/08/2022 02:40, Cryo EM wrote: Hi everyone, In one my PDBs, I see that there is a linkage break in ribonucleotides. Specifically one of the phospodiester bond seems to be broken and thus O3' needs to be bonded to P atom of next nucleotide. What is the easiest way to do this in coot ? Or

[COOT] Making bond

2022-08-08 Thread Cryo EM
Hi everyone, In one my PDBs, I see that there is a linkage break in ribonucleotides. Specifically one of the phospodiester bond seems to be broken and thus O3' needs to be bonded to P atom of next nucleotide. What is the easiest way to do this in coot ? Or any other software? I tried "make link"

Re: [COOT] Missing Restrains for standard amino acids

2022-08-08 Thread Paul Emsley
On 08/08/2022 16:04, Kenneth Satyshur wrote: You can tell phenix where to find coot. Point coot to the ccp4 version, which has the libs. The stand alone version may not have the link to the lib that is maintained by ccp4. I thought that it was the other way around! :-) Use the

Re: [COOT] Missing Restrains for standard amino acids

2022-08-08 Thread Kenneth Satyshur
You can tell phenix where to find coot. Point coot to the ccp4 version, which has the libs. The stand alone version may not have the link to the lib that is maintained by ccp4. kas Kenneth A. Satyshur, M.S., Ph.D. Senior Scientist, Retired From: College of Ag and Life Sciences: Department

[COOT] Joint Instruct-iNEXT Course - September 25-30 - Oeiras (Portugal)

2022-08-08 Thread Jose Artur Brito
(message sent on behalf of Dr. Margarida Archer) Dear colleagues, A Joint Instruct-iNEXT Course on Integrative Structural Biology (incl. X-ray Crystallography, Nuclear Magnetic Resonance, Magnetic Resonance Mass Spectrometry and Electron Microscopy) will take place in September 25-30,