I see. Thanks, Paul, for the explanation. Of course you are right, and I
see that too despite having the correct ALPHA1-6:
find_glycosidic_linkage_type() for A 911 NAG,A 913 FUC returns "BETA1-6"
This settles it for me.
(I am not sure how Markus got beta-fucoses built by Coot the in the
We are talking about different things, I think.
Coot's glyco builder builds alpha 1-6 linked FUC correctly.
Coot's glyco validator used to (until this evening) identify the alpha
1-6 linked FUC as a beta anomer (it no longer does).
See for example the G8 FUC in 8q5u: Coot 0.9.8.94 now
Hi Markus,
I am using Coot that comes with CCP4 8, which has FUC (alpha-L-Fucose)
with an oxygen on C1 in the axial position. Which is the correct form, I
believe.
Using Coot 0.9.8.93, I get my alpha1-6 and alpha1-3 (insect) Fucoses
inserted correctly. I had trouble understanding your
It's been a few months since the last bug release of the 0.9.x. series.
Here's an update so the fixes are available for CCP4 builds.
o CHANGE: Add a more informative message on failure to generate rtop in
transform-map-using-lsq-matrix [Martin Maly]
o CHANGE: The pyranose link
Not many user-visible changes in this one.
o FEATURE: Scene Presets added to the Draw menu
o CHANGE: "Mutate" is now a button so that it can now be
used to mutate RNA and DNA.
o BUG-FIX: mutate_by_overlap() fixed [thanks Simon Vecchioni]
o BUG-FIX: The "Generic Display Objects"
