Re: [COOT] RSR exploding RNA

2009-05-06 Thread CK
on the 2' hydroxyl of the RNA wanders during Real Space Refinement. As it is only a single hydrogen per RNA residue and I can manually place it where it needs to go after doing RSR, it is a problem I can live with. Thanks, Chris On May 6, 2009, at 6:06 AM, Paul Emsley wrote: CK wrote: I

[COOT] RSR exploding RNA

2009-05-05 Thread CK
Hi all, I am refining a structure that contains RNA. I've added hydrogens in the riding positions to help with maintaining proper geometry during refinement. However, when I go to adjust the model between refinements in coot using Real Space Refine (or even Regularize for that matter)

Re: [COOT] RSR exploding RNA

2009-05-05 Thread CK
option but it has no effect on RSR and is not likely the culprit. I'll next try the changing the nomenclature to see if that fixes the problem. -Chris On May 5, 2009, at 3:59 PM, William G. Scott wrote: On May 5, 2009, at 3:16 PM, CK wrote: Hi all, I am refining a structure that contains