Re: [COOT] H5' hydrogen fly away during refinement

2019-10-16 Thread Paul Emsley
On 16/10/2019 09:42, Daniel Larsson wrote: This really annoying thing kept happening to me where the H5' hydrogen would fly off when I refined RNA. This is on my todo list, sorry that you were affected before I fixed it :-( Paul.

[COOT] H5' hydrogen fly away during refinement

2019-10-16 Thread Daniel Larsson
Hi all, This really annoying thing kept happening to me where the H5' hydrogen would fly off when I refined RNA. Now I finally found out why! After comparing the pdb output from coot (Ideal DNA/RNA tool) with my file (hydrogens added by phenix.ready_set), I noticed that in my structure, the