[COOT] Partial Occupancy, Alternative Conformations

2008-09-23 Thread Christian Rausch
Dear all, I am wondering if there's a quick way to set the occupancy for atoms with no (or too low) electron density. Furthermore, is there a way to save two different alternative conformations for the side chain of a residue? Thank you, Christian Rausch __ Biologische

Re: [COOT] Partial Occupancy, Alternative Conformations

2008-09-23 Thread Dirk Kostrewa
Dear Christian, both tasks can be easily done with coot. To add an alternative conformation, use the Add alt conf button in the Calculate - Model/ Fit/Refine window, to change the occupancies of a residue, use Edit - Residue Info. Best regards, Dirk. Am 23.09.2008 um 11:21 schrieb

Re: [COOT] Partial Occupancy, Alternative Conformations

2008-09-23 Thread Paul Emsley
I wonder if Chrisitan has a different definition of quick and easily... To trim[1] atoms that are below a given map level see Section 6.15 of the user manual: http://www.ysbl.york.ac.uk/~emsley/coot/doc/chapters/user-manual_6.html#SEC170 [1] delete or set to zero occupancy. Paul. Dirk