Re: [COOT] APBS binary location MacPymol

2014-10-27 Thread William G. Scott
On Oct 27, 2014, at 5:48 AM, Lau Sze Yi lau_sze...@immunol.a-star.edu.sg wrote: Hi, I had MacPyMOL. In order to use APBS, I rename app to MacPyMOLX11Hybrid. I am ask to supply the APBS binary location but could not find it. Regards, Sze Yi You have to install it separately. You

[COOT] coot build troubles

2014-10-27 Thread Cyrus Harmon
In what I gather is a rite of passage for folks wishing to build/use coot, I'm running into some troubles trying to build coot from source. I think I've got the right prerequisites built and installed: mmdb2 libccp4 clipper-2.1 ssm-1.4 and of course the various prerequisites (python, gtk,

Re: [COOT] coot build troubles

2014-10-27 Thread Hattne, Johan
On Oct 27, 2014, at 16:55, Cyrus Harmon cy...@bobobeach.com wrote: In what I gather is a rite of passage for folks wishing to build/use coot, I'm running into some troubles trying to build coot from source. I think I've got the right prerequisites built and installed: mmdb2 libccp4

Re: [COOT] coot build troubles

2014-10-27 Thread Marcin Wojdyr
On 27 October 2014 20:55, Cyrus Harmon cy...@bobobeach.com wrote: ../coot-utils/.libs/libcoot-coord-utils.so: undefined reference to `clipper::MMDBManager::cell() const' Your linker complains that a library that is part of coot is not linked to libclipper-mmdb.so (which is part of clipper).

Re: [COOT] coot build troubles

2014-10-27 Thread Cyrus Harmon
Following up on my on email... The following patch fixes the build for me from the latest SVN coot-read-only sources. Is the list preference to paste these sorts of things inline to the email, or to send the patch as an attachment? If anyone has any comments/suggestions on the patches, I

Re: [COOT] coot build troubles

2014-10-27 Thread Jens T Kaiser
Just my two cents: I would always send this as an attachment, because some (all?) email clients will mess with line breaks. -jens On Mon, 2014-10-27 at 16:43 -0700, Cyrus Harmon wrote: Following up on my on email... The following patch fixes the build for me from the latest SVN