Many thanks to both Bernhard and Tim. The functions “map_parameters” and
“make_and_draw_map_with_reso_with_refmac_params” were exactly what I was
looking for. The function below does what I was after, allowing the user to
enter a new high-resolution limit for the active map, and closing the old
(Toggle mol display,/,
lambda: toggle_mol_display())
On Apr 30, 2015, at 7:29 PM, Clarke, Oliver
oc2...@cumc.columbia.edumailto:oc2...@cumc.columbia.edu wrote:
Also, on the topic of changing rmsd, I like to bind 1-9 to the equivalent rmsd
levels, as follows - this is helpful when scrolling large maps
(scroll_wheel_map(),8))
add_key_binding(Map to 9 sigma,(,
lambda: set_contour_level_in_sigma(scroll_wheel_map(),9))
On Apr 30, 2015, at 7:26 PM, Clarke, Oliver
oc2...@cumc.columbia.edumailto:oc2...@cumc.columbia.edu wrote:
Yes - I have those keybindings for both maps and models - they are included in
my custom
Yes - I have those keybindings for both maps and models - they are included in
my custom settings file which you can download from
cootscripts.tiddlyspace.comhttp://cootscripts.tiddlyspace.com (and I think
the keybindings are described there also), and I’ve also reproduced them below:
That should work for the moment, thanks Bernhard! I can’t use it with
mutate_residue_range because there is no single letter code, but I can loop
through all residues in a range sequentially and mutate to ala and then set the
residue name, so that works fine.
I would still ultimately favor
range to UNK (click start and end), lambda func:
mutate_residue_range_by_click_a())
On Jun 27, 2015, at 12:39 PM, Clarke, Oliver oc2...@cumc.columbia.edu wrote:
That should work for the moment, thanks Bernhard! I can’t use it with
mutate_residue_range because there is no single letter code
OK, makes sense, thanks!
Oliver.
On Jun 14, 2015, at 5:40 PM, Paul Emsley pems...@mrc-lmb.cam.ac.uk wrote:
On 13/06/15 18:12, Oliver Clarke wrote:
I realize this is somewhat of a niche concern, but figured I would report it
anyway. The sequence viewer is broken for long protein chains,
AM, Clarke, Oliver <oc2...@cumc.columbia.edu> wrote:
>
> Hi Paul,
>
> set_do_probe_dots_on_rotamers_and_chis doesn’t involve communication between
> Phenix and Coot does it? These are just the probe dots that appear when
> switching between rotamers in the regular
