Hi Kate, if you're unable to get these outliers to fit, you might consider that
there's a bigger problem like a register error, cis-peptide, incorrect backbone
tracing, etc. If you have high resolution structures available for comparison
if can be helpful.
Best wishes
Kevin
Sent from my phone
Ah, I actually have the same sequence display when I backrev to 0.9.8.4 or
0.9.8.3, so maybe this was a change made outside of coot or perhaps in my
settings
From: Mailing list for users of COOT Crystallographic Software
on behalf of Dr. Kevin M Jude
Date: Wednesday, November 16, 2022 at 11
Hopping onto this thread:
Besides the sugar connectivity, I see that when I Draw > Sequence View, the
sequence opens in a pop-up window instead of the main window and does not show
gaps or numbering. This is coot 0.9.8.5 from ccpem nightly 20221108 on M1 chip,
Mac OS Monterey 12.6.
From:
I don’t know of a standalone coot that is working on OS X, but it’s included
with both ccpem or of ccp4, so you can install one of those. For ccpem, at
least, you should install the latest nightly (not the stable release)
From: Mailing list for users of COOT Crystallographic Software
on
Hi Coot users-
In one of Paul’s demo videos (https://youtu.be/OTygXRLKb68) he uses
Ctrl-Shift-scroll to advance through molecule representations (color by
molecule, C-a trace, etc). This seems extremely useful to me, and it works when
I try it on a Linux machine, but not on my Mac. It also
