Hello,
I am using the autobuild script and the build for coot seems to be failing.
I am attaching the log with the error message. Any help would be greatly
appreciated.
Thanks,
-Simran
--
This is script version 4.74 for Gtk2
Tue Jun 29 16:27:28 PDT 2010
currently architecture is x86_64
systype: x86_64--
update_libtool: 1
update_config_guess_sub: 1
AUTOBUILD_BUILD=/var/tmp/coot/src
AUTOBUILD_INSTALLED=/var/tmp/coot-build
AUTOBUILD_SOURCES=/var/tmp/coot/src/sources
BASH=/bin/sh
BASH_ARGC=()
BASH_ARGV=()
BASH_LINENO=([0]="0")
BASH_SOURCE=([0]="./build-it-gtk2-simple")
BASH_VERSINFO=([0]="3" [1]="2" [2]="48" [3]="1" [4]="release"
[5]="x86_64-suse-linux-gnu")
BASH_VERSION='3.2.48(1)-release'
COLORTERM=1
CPU=x86_64
CSHEDIT=emacs
CSHRCREAD=true
DIRSTACK=()
ENABLE_PYTHON_COOT=no
ENV=/etc/bash.bashrc
EUID=17229
FROM_HEADER=
GROUP=unknown
GROUPS=()
G_BROKEN_FILENAMES=1
g_filename_encodi...@locale,UTF-8,ISO-8859-1,CP1252
HOME=/vb/Sysops/simran
HOST=shinda
HOSTNAME=shinda.
HOSTTYPE=x86_64-linux
IFS='
'
INFODIR=/usr/local/info:/usr/share/info:/usr/info
INFOPATH=/usr/local/info:/usr/share/info:/usr/info
INPUTRC=/etc/inputrc
JAVA_BINDIR=/usr/lib64/jvm/jre/bin
JAVA_HOME=/usr/lib64/jvm/jre
JAVA_ROOT=/usr/lib64/jvm/jre
JRE_HOME=/usr/lib64/jvm/jre
KRB5CCNAME=FILE:/tmp/krb5cc_17229_qt1UkS
LANG=en_US.UTF-8
LESS='-M -I'
LESSCLOSE='lessclose.sh %s %s'
LESSKEY=/etc/lesskey.bin
LESSOPEN='lessopen.sh %s'
LESS_ADVANCED_PREPROCESSOR=no
LOGNAME=simran
LOGS=/var/tmp/coot/logs
LS_COLORS='no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.avi=01;35:*.bmp=01;35:*.fli=01;35:*.gif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mng=01;35:*.mov=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.tga=01;35:*.tif=01;35:*.xbm=01;35:*.xpm=01;35:*.dl=01;35:*.gl=01;35:*.wmv=01;35:*.aiff=00;32:*.au=00;32:*.mid=00;32:*.mp3=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32:'
LS_OPTIONS='-N --color=tty -T 0'
MACHTYPE=x86_64
MAIL=/var/mail/simran
MANPATH=/usr/share/man:/usr/local/man:/usr/man
MINICOM='-c on'
MORE=-sl
NNTPSERVER=news
OPTERR=1
OPTIND=1
OS=Linux
OSTYPE=linux
PAGER=less
PATH=/var/tmp/coot-build-gtk2/bin:/usr/java/j2re1.4.2_13/bin:/usr/java/j2re1.4.2_13/bin:/vb/Sysops/simran/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc
PIPESTATUS=([0]="1")
POSIXLY_CORRECT=y
PPID=18243
PS4='+ '
PWD=/var/tmp/coot
PYTHONSTARTUP=/etc/pythonstart
QT_HOME_DIR=/usr/share/desktop-data
SHELL=/bin/tcsh
SHELLOPTS=braceexpand:hashall:interactive-comments:posix
SHLVL=3
SSH_CLIENT='10.31.2.107 53514 22'
SSH_CONNECTION='10.31.2.107 53514 128.137.51.4 22'
SSH_TTY=/dev/pts/2
STABLE_DEST_DIR='/var/tmp/coot/binaries/stable}'
STY=18242.pts-2.shinda
TERM=screen
TERMCAP='SC|screen|VT 100/ANSI X3.64 virtual terminal:\
:DO=\E[%dB:LE=\E[%dD:RI=\E[%dC:UP=\E[%dA:bs:bt=\E[Z:\
:cd=\E[J:ce=\E[K:cl=\E[H\E[J:cm=\E[%i%d;%dH:ct=\E[3g:\
:do=^J:nd=\E[C:pt:rc=\E8:rs=\Ec:sc=\E7:st=\EH:up=\EM:\
:le=^H:bl=^G:cr=^M:it#8:ho=\E[H:nw=\EE:ta=^I:is=\E)0:\
:li#49:co#164:am:xn:xv:LP:sr=\EM:al=\E[L:AL=\E[%dL:\
:cs=\E[%i%d;%dr:dl=\E[M:DL=\E[%dM:dc=\E[P:DC=\E[%dP:\
:im=\E[4h:ei=\E[4l:mi:IC=\E[%d@:ks=\E[?1h\E=:\
:ke=\E[?1l\E>:vi=\E[?25l:ve=\E[34h\E[?25h:vs=\E[34l:\
:ti=\E[?1049h:te=\E[?1049l:us=\E[4m:ue=\E[24m:so=\E[3m:\
:se=\E[23m:mb=\E[5m:md=\E[1m:mr=\E[7m:me=\E[m:ms:\
:Co#8:pa#64:AF=\E[3%dm:AB=\E[4%dm:op=\E[39;49m:AX:\
:vb=\Eg:G0:as=\E(0:ae=\E(B:\
:ac=\140\140aaffggjjkkllmmnnooppqqrrssttuuvvwwxxyyzz{{||}}~~..--++,,hhII00:\
:po=\E[5i:pf=\E[4i:k0=\E[10~:k1=\EOP:k2=\EOQ:k3=\EOR:\
:k4=\EOS:k5=\E[15~:k6=\E[17~:k7=\E[18~:k8=\E[19~:\
:k9=\E[20~:k;=\E[21~:F1=\E[23~:F2=\E[24~:F3=\E[1;2P:\
:F4=\E[1;2Q:F5=\E[1;2R:F6=\E[1;2S:F7=\E[15;2~:\
:F8=\E[17;2~:F9=\E[18;2~:FA=\E[19;2~:kb=:K2=\EOE:\
:kB=\E[Z:kF=\E[1;2B:kR=\E[1;2A:*4=\E[3;2~:*7=\E[1;2F:\
:#2=\E[1;2H:#3=\E[2;2~:#4=\E[1;2D:%c=\E[6;2~:%e=\E[5;2~:\
:%i=\E[1;2C:kh=\E[1~:@1=\E[1~:kH=\E[4~:@7=\E[4~:\
:kN=\E[6~:kP=\E[5~:kI=\E[2~:kD=\E[3~:ku=\EOA:kd=\EOB:\
:kr=\EOC:kl=\EOD:km:'
UID=17229
USER=simran
VENDOR=suse
WINDOW=0
WINDOWMANAGER=/usr/bin/gnome
XCURSOR_THEME=DMZ
XDG_CONFIG_DIRS=/etc/xdg
XDG_DATA_DIRS=/usr/local/share:/usr/share:/etc/opt/kde3/share:/opt/kde3/share:/usr/share/gnome/help
XKEYSYMDB=/usr/share/X11/XKeysymDB
XNLSPATH=/usr/share/X11/nls
_=']'
arch=x86_64
architecture=x86_64
build_coot_prerelease=no
build_type=gtk2
check_dependencies_in_install_only=1
dist='package centos-release is not installed'
dist_name=
dist_ver=
do_nightlies=0
fallback_coot_version=coot-0.4
have_malloc=1
have_rpm=0
i=centos
no_proxy=.corp.net.com
processor=GNU/Linux
proxy_host=myproxy.com
proxy_port=800
script_version=4.74
shared_lib_ext=so
shared_static_flag=--disable-shared
systype=x86_64--
update_config_guess_sub=1
update_libtool=1
use_proxy=
g++ (SUSE Linux) 4.3.2 [gcc-4_3-branch revision 141291]
Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Testing version of make
GNU Make 3.81
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.
There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE.
This program built for x86_64-unknown-linux-gnu
testing for patch
Date: 2010-06-29__T23_27_29
checking wget
which wget
/usr/bin/wget
Done wget check.
setting coot_version to coot-0.6.1 from extraction
INFO:: binary tar destination dir: BINARY_TAR_DEST_DIR is
/var/tmp/coot/binaries/stable}
testing for install_top_dir: /var/tmp/coot-build-gtk2
INFO:: /var/tmp/coot-build-gtk2 exists already.
done testing for /var/tmp/coot-build-gtk2
ccp4_system_type linux
this swig:
/usr/bin/swig
SWIG Version 1.3.36
Compiled with g++ [x86_64-suse-linux-gnu]
Please see http://www.swig.org for reporting bugs and further information
system has swig. Good.
installation has fftw
curl should be built
system does not have libidn.so, libcurl should be built also
installation does not have libidn.so, libcurl should be built also
pkg-config is new enough 0.23
PKG_CONFIG_PATH is /var/tmp/coot-build-gtk2/lib/pkgconfig:/usr/lib/pkgconfig
system/installation has freetype2
glib is not up to date, rebuild glib - maybe.
:::::::: gtk version is at least
:::::::: gtk version is 2.14.4
gtk is new enough for guile-gtk
freeglut should be built
libtool should be built
gmp should be built
readline needs to be built
atempting to run installed guile-config (this may fail, that's OK).
guile should be built
guile-gui needs to be installed
guile-lib needs to be installed
testing for greg using /usr/bin/guile
guile greg status 127
greg should be built
gsl should be built
gtkglext should be built
installation does not have guile-gtk
guile-gtk.h not found, guile-gtk should be built
pkg-config does not find libgnomecanvas-2.0. Exiting.
#define MMDBF_IgnoreHash 0x00001000
mmdb should not be built
SSMlib should not be built
INFO:: shall we build clipper: mmdb not to be built
INFO:: shall we build clipper: fftw not to be built
/var/tmp/coot-build-gtk2/include/clipper/ccp4/ccp4_mtz_io.h not exist,
building clipper
not building libccp4c:
not building mmdb:
not building ssmlib:
not building fftw:
BUILDING clipper:
BUILDING freeglut:
BUILDING gtkglext:
not building python:
not building pygobject:
not building pytgtk
BUILDING gmp:
BUILDING libtool:
BUILDING readline:
BUILDING guile:
building greg:
BUILDING guile-gtk:
GTK minor version is good enough, 14
BUILDING guile-gui:
BUILDING guile-lib:
BUILDING libidn:
BUILDING curl:
BUILDING gsl:
BUILDING coot: version coot-0.6.1, python=no
using coot version coot-0.6.1
11960 -rw-r--r-- 1 simran 984 12229005 2010-01-26 16:01
/var/tmp/coot/src/sources/coot-0.6.1.tar.gz
good /var/tmp/coot/src/sources/coot-0.6.1.tar.gz exists
Tue Jun 29 16:37:12 PDT 2010
/var/tmp/coot/src/shinda_2010-06-29__T23_27_29
BUILDING coot: version coot-0.6.1, python=no
coot build failed, exiting.
