[COOT] Chain refine woes

2022-02-15 Thread Pranav Shah
Hi Paul, I am trying to use the chain refine functionality in Coot 0.9.7 which I have installed via ccpem in a CentOS8 environment and I am seeing the following message /// In /home/pshah/software/ccpem/ccpem-20220125/share/guile/gtk-2.0/gtk.scm: 147: 0* [apply # ()] In unknown file: ?: 1 [#]

Re: [COOT] Chain refine woes

2022-02-15 Thread Paul Emsley
On 15/02/2022 14:48, Pranav Shah wrote: Hi Paul, I am trying to use the chain refine functionality in Coot 0.9.7 which I have installed via ccpem in a CentOS8 environment and I am seeing the following message /// In /home/pshah/software/ccpem/ccpem-20220125/share/guile/gtk-2.0/gtk.scm: 147: 0*

Re: [COOT] Chain refine woes

2022-02-15 Thread Pranav Shah
Hi Paul, I did install chain-refine using Curlew but I have a peculiar problem in that that I see the following error when I try to install it - DEBUG:: in coot_get_url_and_activate_curl_hook https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/extensions/curlew/info.json coot-download/info.json N

Re: [COOT] Chain refine woes

2022-02-15 Thread Paul Emsley
On 15/02/2022 18:19, Pranav Shah wrote: Hi Paul, I did install chain-refine using Curlew I said "refinement tools" - as in "Refinement Tools" but I have a peculiar problem in that that I see the following error when I try to install it - DEBUG:: in coot_get_url_and_activate_curl_hook http

Re: [COOT] Chain refine woes

2022-02-15 Thread Pranav Shah
Looks like i misread your last missive... indeed installing refinement tools fixes the problem (on both the mac and the Linux boxes)... Thanks Paul for thehelp! Best, Pranav -- Pranav Shah Postdoctoral Research Fellow. Division of Structural Biology, Wellcome Trust Centre for Human Genetics, Unive

[COOT] Centos issues

2022-02-15 Thread Hruza, Alan
Hi all, Recently we (IT) tried to upgrade our Linux box to a newer version of Centos7 and it seemed to break the graphics. By breaking, I mean when Coot is launched, there are no errors (except for a library that was missing and was installed now) But as I use Coot the display ( Sequence ) gets

Re: [COOT] Centos issues

2022-02-15 Thread Kenneth Satyshur
Already reported by Me. upgrade to 0.9.6 or 0.9.7. Although it still does not work correctly in 3D, since the windows are connected to 3D and the text is grabled. Centos 7 with Mate desktop works in 3D because stereo is associated with a window (stereo-in-a-window) which the Gnome desktop does

Re: [COOT] Centos issues

2022-02-15 Thread Paul Emsley
On 15/02/2022 20:53, Hruza, Alan wrote: Hi all, Recently we (IT) tried to upgrade our Linux box to a newer version of Centos7 and it seemed to break the graphics. By breaking, I mean when Coot is launched, there are no errors (except for a library that was missing and was installed now)