[COOT] RSR of tRNA with nascent chain

2021-07-27 Thread Helge Paternoga
Dear all, I have what feels like a trivial question about modelling in coot, but unfortunately I have not managed to solve it myself. I would like to create a bond between a P-tRNA and nascent chain and then subsequently use RSR in Coot for modelling. What I gathered so far is that I should

Re: [COOT] Map rotation and translation

2022-01-28 Thread Helge Paternoga
Thank you Paul for the explanation/clarification. Indeed, it would be enough for me at the moment if I could align maps according to the fit I get in ChimeraX. The "transform_map() function" sounds exactely like what I was looking for! Could you perhaps elaborate if I filled in the

[COOT] Map rotation and translation

2022-01-26 Thread Helge Paternoga
Dear all, Continuing from this topic over at the ChimeraX user list: http://plato.cgl.ucsf.edu/pipermail/chimerax-users/2022-January/003177.html I would like to ask if it is possible currently (or to introduce) the ability in Coot to rotate and translate a cryo-EM map according to the

[COOT] Coot 9.8.91 is still broken

2023-08-24 Thread Helge Paternoga
Dear Paul, I just had the chance to try out the new Coot version 9.8.91 from CCP4 and I would like to report that RSR of ribosomes is still broken (albeit not as severely as before). You can have a look at PDB-7K00 for examples: https://www.rcsb.org/structure/7K00