Re: [COOT] Release 0.9.7

2022-01-25 Thread Bernhard Lohkamp

Sorry for the past post. This was of course meant for Paul only... I blame the 
email client I am forced to use nowadays. 

Anyway, now it is clear that it will take a moment to fix the Windows release  
Not too long I hope though.

B

***

Dr. Bernhard Lohkamp | Associate Professor/Lektor/Docent

Div. Molecular Structural Biology/Biomedicum D9
Dept. of Medical Biochemistry and Biophysics (MBB) |
Karolinska Institutet
SE-171 77 Stockholm
Sweden
+46 8 52487055
bernhard.lohk...@ki.se | ki.se

> -Original Message-
> From: Mailing list for users of COOT Crystallographic Software
>  On Behalf Of Bernhard Lohkamp
> Sent: 25 January 2022 15:53
> To: COOT@JISCMAIL.AC.UK
> Subject: Re: Release 0.9.7
> 
> 
> Finally  Well, still some merge conflicts. Not sure what they are yet. Only 
> had
> a brief look and that confused me more than anything. Maybe too ill. I had 
> some
> reaction on the booster but was fine then. Only for two days later to be
> completely out and not fully recovered. I just went for a test. How are you?
> Anyway, from a diff to your branch it doesn’t look too bad though  with the
> exception of extensions.py. From what I see this is messed as it wont fill the
> menuitems but rather be an extensions menu. Most important for python only
> (i.e. Windows) so probably not too much of an issue overall. I will certainly 
> keep
> this for my branch and windows build 
> 
> B
> 
> ***
> 
> Dr. Bernhard Lohkamp | Associate Professor/Lektor/Docent
> 
> Div. Molecular Structural Biology/Biomedicum D9 Dept. of Medical Biochemistry
> and Biophysics (MBB) | Karolinska Institutet
> SE-171 77 Stockholm
> Sweden
> +46 8 52487055
> bernhard.lohk...@ki.se | ki.se
> 
> > -Original Message-
> > From: Mailing list for users of COOT Crystallographic Software
> >  On Behalf Of Paul Emsley
> > Sent: 25 January 2022 02:42
> > To: COOT@JISCMAIL.AC.UK
> > Subject: Release 0.9.7
> >
> > We are pleased to (at last) announce the release of 0.9.7
> >
> > source
> >
> >
> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww2.
> > mrc-
> >
> lmb.cam.ac.uk%2Fpersonal%2Fpemsley%2Fcoot%2Fsource%2Freleases%2Fco
> > ot-
> >
> 0.9.7.tar.gzdata=04%7C01%7CBernhard.Lohkamp%40KI.SE%7Cccd2fd2
> >
> 795df40f8ef5908d9dfa3f3e9%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%
> >
> 7C0%7C637786717935815442%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4
> >
> wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000
> >
> mp;sdata=EDg9UEkpFqMHAdEc9zmUQp65%2FvutBVQULPTk2CipXS8%3D
> > p;reserved=0
> >
> > binaries
> >
> >
> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww2.
> > mrc-
> >
> lmb.cam.ac.uk%2Fpersonal%2Fpemsley%2Fcoot%2Fbinaries%2Frelease%2Fco
> > ot-0.9.7-binary-Linux-x86_64-scientific-linux-7.6-python-
> >
> gtk2.tar.gzdata=04%7C01%7CBernhard.Lohkamp%40KI.SE%7Cccd2fd2
> >
> 795df40f8ef5908d9dfa3f3e9%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%
> >
> 7C0%7C637786717935815442%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4
> >
> wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000
> >
> mp;sdata=%2Bnn5whEDByejLG7%2BmL6jvrnMJ1Z2GOPts3dpbb2Gk4g%3D
> > mp;reserved=0
> >
> >
> > Release 0.9.7
> >
> >
> >o FEATURE: Add angles in coot-ligand-validation
> >
> >o FEATURE: "Updating Maps" added to the API and GUI
> >
> >o FEATURE: Stereo style can now be switched back to how it used to
> > be in
> > 2010 [Dirk Kostrewa]
> >
> >o CHANGE:  Better B-factors for added waters
> >
> >o CHANGE:  Windows build script updates
> >
> >o CHANGE:  RSR GM restraints now filtered by distance difference
> >
> >o BUG-FIX: Python GUI and updates to match scheme version - now
> > pyrogen work on Windows
> >
> >o BUG-FIX: Fix gui simple mutation crash [John Bollinger].
> >
> >o BUG-FIX: add a null function (no-coot-tips) for those that have
> > this in their startup scripts
> >
> >o BUG-FIX: Fix crash when coot tries to exit while the refinement
> > is still refining [James Holton]
> >
> >
> #
> > ###
> >
> > To unsubscribe from the COOT list, click the following link:
> > https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.
> >
> jis%2Fdata=04%7C01%7CBernhard.Lohkamp%40KI.SE%7C2a3dd6462d
> 7f4dcb9
> >
> ad808d9e0126037%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%7C0%7C6
> 37787193
> >
> 472360300%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjo
> iV2luMzIi
> >
> LCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000sdata=8a65D7Fv%2B%2B
> OwpVLTes
> > UUVmGwgQSvDMTiYo2nWfDgYXA%3Dreserved=0
> > cmail.ac.uk%2Fcgi-bin%2FWA-
> >
> JISC.exe%3FSUBED1%3DCOOT%26A%3D1data=04%7C01%7CBernhard.
> >
> Lohkamp%40KI.SE%7Cccd2fd2795df40f8ef5908d9dfa3f3e9%7Cbff7eef1cf4b4
> >
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> >
> 

Re: [COOT] Release 0.9.7

2022-01-25 Thread Bernhard Lohkamp

Finally  Well, still some merge conflicts. Not sure what they are yet. Only 
had a brief look and that confused me more than anything. Maybe too ill. I had 
some reaction on the booster but was fine then. Only for two days later to be 
completely out and not fully recovered. I just went for a test. How are you?
Anyway, from a diff to your branch it doesn’t look too bad though  with the 
exception of extensions.py. From what I see this is messed as it wont fill the 
menuitems but rather be an extensions menu. Most important for python only 
(i.e. Windows) so probably not too much of an issue overall. I will certainly 
keep this for my branch and windows build 

B

***

Dr. Bernhard Lohkamp | Associate Professor/Lektor/Docent

Div. Molecular Structural Biology/Biomedicum D9
Dept. of Medical Biochemistry and Biophysics (MBB) |
Karolinska Institutet
SE-171 77 Stockholm
Sweden
+46 8 52487055
bernhard.lohk...@ki.se | ki.se

> -Original Message-
> From: Mailing list for users of COOT Crystallographic Software
>  On Behalf Of Paul Emsley
> Sent: 25 January 2022 02:42
> To: COOT@JISCMAIL.AC.UK
> Subject: Release 0.9.7
>
> We are pleased to (at last) announce the release of 0.9.7
>
> source
>
> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww2.
> mrc-
> lmb.cam.ac.uk%2Fpersonal%2Fpemsley%2Fcoot%2Fsource%2Freleases%2Fco
> ot-
> 0.9.7.tar.gzdata=04%7C01%7CBernhard.Lohkamp%40KI.SE%7Cccd2fd2
> 795df40f8ef5908d9dfa3f3e9%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%
> 7C0%7C637786717935815442%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4
> wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000
> mp;sdata=EDg9UEkpFqMHAdEc9zmUQp65%2FvutBVQULPTk2CipXS8%3D
> p;reserved=0
>
> binaries
>
> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww2.
> mrc-
> lmb.cam.ac.uk%2Fpersonal%2Fpemsley%2Fcoot%2Fbinaries%2Frelease%2Fco
> ot-0.9.7-binary-Linux-x86_64-scientific-linux-7.6-python-
> gtk2.tar.gzdata=04%7C01%7CBernhard.Lohkamp%40KI.SE%7Cccd2fd2
> 795df40f8ef5908d9dfa3f3e9%7Cbff7eef1cf4b4f32be3da1dda043c05d%7C0%
> 7C0%7C637786717935815442%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4
> wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000
> mp;sdata=%2Bnn5whEDByejLG7%2BmL6jvrnMJ1Z2GOPts3dpbb2Gk4g%3D
> mp;reserved=0
>
>
> Release 0.9.7
>
>
>o FEATURE: Add angles in coot-ligand-validation
>
>o FEATURE: "Updating Maps" added to the API and GUI
>
>o FEATURE: Stereo style can now be switched back to how it used to be in
> 2010 [Dirk Kostrewa]
>
>o CHANGE:  Better B-factors for added waters
>
>o CHANGE:  Windows build script updates
>
>o CHANGE:  RSR GM restraints now filtered by distance difference
>
>o BUG-FIX: Python GUI and updates to match scheme version - now pyrogen
> work on Windows
>
>o BUG-FIX: Fix gui simple mutation crash [John Bollinger].
>
>o BUG-FIX: add a null function (no-coot-tips) for those that have this in 
> their
> startup scripts
>
>o BUG-FIX: Fix crash when coot tries to exit while the refinement is still 
> refining
> [James Holton]
>
> #
> ###
>
> To unsubscribe from the COOT list, click the following link:
> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.jis
> cmail.ac.uk%2Fcgi-bin%2FWA-
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