Re: [COOT] coot error on mac osx Big Sur
Hi Martin and Paul Somehow your replies had been buried in the junk folder... sorry. In ccp4i2, I get that error and coot doesn't start. After the most recent upgrade and updating Xquartz (2.8.0), I can now run coot from the application list, seems to be fine. So it seems it's a ccp4i2 issue - I'll report in ccp4i2 bb! Thanks for your help! Paula === Dr Paula S. Salgado Senior Lecturer in Macromolecular Crystallography Molecular Mechanisms of Life Lead During the current COVID-19 crisis, my working hours are more flexible due to childcare responsibilities. Please bear with me if my reply is delayed and if I email outside your normal working hours. In any case, I do not expect a response outside those hours. Stay safe. Newcastle University Biosciences Institute Faculty of Medical Sciences 2nd Floor Cookson Building Newcastle University Newcastle upon Tyne, NE2 4HH, UK Tel: +44 (0)191 208 7432 Email: paula.salg...@ncl.ac.uk From: Martin Montgomery Sent: 20 April 2021 09:25 To: Paula Salgado Cc: COOT@jiscmail.ac.uk Subject: Re: coot error on mac osx Big Sur ⚠ External sender. Take care when opening links or attachments. Do not provide your login details. Hi Paula, Coot 0.9.5 via ccp4 7.1.013 is working fine for me on macos11.2.3 both from the gui and from the cli. Which xquartz version are you using? For me at least, coot via ccp4 works with quartz 2.8.0 and 2.8.1beta1. Regards MGM > On 19 Apr 2021, at 16:59, Paul Emsley wrote: > > Hi Paula, > > On 19/04/2021 10:08, Paula Salgado wrote: >> I'm trying to run Coot on MacOs Big Sur (v. 11.2.3) > > That is not something that I've tried. > >> via ccp4i2 and get this error: >> -ERROR- Ccoot_rebuild:56 Error in wrapper coot_rebuild 0.0:: External >> process exited with exit code != 0 >> Process: coot > >> -ERROR- Ccoot_rebuild:47 Error in wrapper coot_rebuild >> 0.0:: Error in checking external process after completion >> exit status and code: 0 1 > > I am unfamilair with CCP4i2, so that doesn't mean much to me. > >> If I try to run from command line, nothing happens... > > What kind of nothing are we talking about? Command not found? A window > appears then disappears? The process starts and returns an error? The process > starts and doesn't return to a prompt? The process starts then stops then > returns to the prompt? > > Paul. > > > > To unsubscribe from the COOT list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 > > This message was issued to members of > www.jiscmail.ac.uk/COOT<http://www.jiscmail.ac.uk/COOT>, a mailing list > hosted by www.jiscmail.ac.uk<http://www.jiscmail.ac.uk>, terms & conditions > are available at https://www.jiscmail.ac.uk/policyandsecurity/ To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [COOT] coot error on mac osx Big Sur
Hi Paula, Coot 0.9.5 via ccp4 7.1.013 is working fine for me on macos11.2.3 both from the gui and from the cli. Which xquartz version are you using? For me at least, coot via ccp4 works with quartz 2.8.0 and 2.8.1beta1. Regards MGM > On 19 Apr 2021, at 16:59, Paul Emsley wrote: > > Hi Paula, > > On 19/04/2021 10:08, Paula Salgado wrote: >> I'm trying to run Coot on MacOs Big Sur (v. 11.2.3) > > That is not something that I've tried. > >> via ccp4i2 and get this error: >> -ERROR- Ccoot_rebuild:56 Error in wrapper coot_rebuild 0.0:: External >> process exited with exit code != 0 >> Process: coot > >> -ERROR- Ccoot_rebuild:47 Error in wrapper coot_rebuild >> 0.0:: Error in checking external process after completion >> exit status and code: 0 1 > > I am unfamilair with CCP4i2, so that doesn't mean much to me. > >> If I try to run from command line, nothing happens... > > What kind of nothing are we talking about? Command not found? A window > appears then disappears? The process starts and returns an error? The process > starts and doesn't return to a prompt? The process starts then stops then > returns to the prompt? > > Paul. > > > > To unsubscribe from the COOT list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 > > This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list > hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [COOT] coot error on mac osx Big Sur
Hi Paula, On 19/04/2021 10:08, Paula Salgado wrote: I'm trying to run Coot on MacOs Big Sur (v. 11.2.3) That is not something that I've tried. via ccp4i2 and get this error: -ERROR- Ccoot_rebuild:56 Error in wrapper coot_rebuild 0.0:: External process exited with exit code != 0 Process: coot > -ERROR- Ccoot_rebuild:47 Error in wrapper coot_rebuild 0.0:: Error in checking external process after completion exit status and code: 0 1 I am unfamilair with CCP4i2, so that doesn't mean much to me. If I try to run from command line, nothing happens... What kind of nothing are we talking about? Command not found? A window appears then disappears? The process starts and returns an error? The process starts and doesn't return to a prompt? The process starts then stops then returns to the prompt? Paul. To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
