[PathwayCommons/factoid]

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[PathwayCommons/factoid] d5c058: Optional PubMed ID in info panel.

Branch: refs/heads/iss961_crossref-works Home: https://github.com/PathwayCommons/factoid Commit: d5c058f0adb83ca7515869ddb6a4d8f62317a83f https://github.com/PathwayCommons/factoid/commit/d5c058f0adb83ca7515869ddb6a4d8f62317a83f Author: Jeffrey Wong Date: 2023-07-27 (Thu, 27

[PathwayCommons/factoid] e58466: Rename modules.

Branch: refs/heads/iss961_crossref-works Home: https://github.com/PathwayCommons/factoid Commit: e58466c03c696ad6a7f1d5509ddf8d91598b1fc8 https://github.com/PathwayCommons/factoid/commit/e58466c03c696ad6a7f1d5509ddf8d91598b1fc8 Author: Jeffrey Wong Date: 2023-08-30 (Wed, 30

[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid] 44bb19: CrossRef API wrapper.

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 44bb1904852969f230d6100a0a2f16117c37a746 https://github.com/PathwayCommons/factoid/commit/44bb1904852969f230d6100a0a2f16117c37a746 Author: Jeffrey Wong Date: 2023-08-01 (Tue, 01 Aug 2023

[PathwayCommons/factoid] d5c058: Optional PubMed ID in info panel.

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: d5c058f0adb83ca7515869ddb6a4d8f62317a83f https://github.com/PathwayCommons/factoid/commit/d5c058f0adb83ca7515869ddb6a4d8f62317a83f Author: Jeffrey Wong Date: 2023-07-27 (Thu, 27 Jul 2023

[PathwayCommons/factoid] 593cc5: Works and utils for prioritizing search hits from ...

Branch: refs/heads/iss961_crossref-works Home: https://github.com/PathwayCommons/factoid Commit: 593cc58df846c0428dc8cf90fd5e8acfc8c32f11 https://github.com/PathwayCommons/factoid/commit/593cc58df846c0428dc8cf90fd5e8acfc8c32f11 Author: Jeffrey Wong Date: 2023-08-01 (Tue, 01

[PathwayCommons/factoid]

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[PathwayCommons/factoid] 44bb19: CrossRef API wrapper.

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[PathwayCommons/factoid]

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[PathwayCommons/factoid] 180bb5: Move params locally

Branch: refs/heads/iss961_preprint-support Home: https://github.com/PathwayCommons/factoid Commit: 180bb59ad2ee3e95c0e5eb80ea48e0eb412adfd1 https://github.com/PathwayCommons/factoid/commit/180bb59ad2ee3e95c0e5eb80ea48e0eb412adfd1 Author: Jeffrey Wong Date: 2023-07-31 (Mon, 31

[PathwayCommons/factoid] fdd9c9: Use full path import

Branch: refs/heads/iss961_preprint-support Home: https://github.com/PathwayCommons/factoid Commit: fdd9c99a9cfb3060bafabf1402336ea3983ec96f https://github.com/PathwayCommons/factoid/commit/fdd9c99a9cfb3060bafabf1402336ea3983ec96f Author: Jeffrey Wong Date: 2023-07-31 (Mon, 31

[PathwayCommons/factoid] 773d9e: Renaming import for crossref.

Branch: refs/heads/iss961_preprint-support Home: https://github.com/PathwayCommons/factoid Commit: 773d9e0f34018399dd6c8835ad4586b4d49b9288 https://github.com/PathwayCommons/factoid/commit/773d9e0f34018399dd6c8835ad4586b4d49b9288 Author: Jeffrey Wong Date: 2023-07-31 (Mon, 31

[PathwayCommons/factoid] 09712f: Bug in crossref type filter url param format.

Branch: refs/heads/iss961_preprint-support Home: https://github.com/PathwayCommons/factoid Commit: 09712f454c1877a18580d4f459abc0f62e3465f0 https://github.com/PathwayCommons/factoid/commit/09712f454c1877a18580d4f459abc0f62e3465f0 Author: Jeffrey Wong Date: 2023-07-31 (Mon, 31

[PathwayCommons/factoid] d38db7: Fixing order by score, created algorithm

Branch: refs/heads/iss961_preprint-support Home: https://github.com/PathwayCommons/factoid Commit: d38db7e44519425235d19cbb82b1a50aa0c922a2 https://github.com/PathwayCommons/factoid/commit/d38db7e44519425235d19cbb82b1a50aa0c922a2 Author: Jeffrey Wong Date: 2023-07-31 (Mon, 31

[PathwayCommons/factoid] f59eb1: Completing tests for PubMedArticle mapping

Branch: refs/heads/iss961_preprint-support Home: https://github.com/PathwayCommons/factoid Commit: f59eb138f65736dbef540210b72735d93a0aeeb7 https://github.com/PathwayCommons/factoid/commit/f59eb138f65736dbef540210b72735d93a0aeeb7 Author: Jeffrey Wong Date: 2023-07-28 (Fri, 28

[PathwayCommons/factoid] d5c058: Optional PubMed ID in info panel.

Branch: refs/heads/iss961_allow-doi-or-pubmedId Home: https://github.com/PathwayCommons/factoid Commit: d5c058f0adb83ca7515869ddb6a4d8f62317a83f https://github.com/PathwayCommons/factoid/commit/d5c058f0adb83ca7515869ddb6a4d8f62317a83f Author: Jeffrey Wong Date: 2023-07-27

[PathwayCommons/factoid]

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[PathwayCommons/factoid] 941e3e: Core article field tests.

Branch: refs/heads/iss961_preprint-support Home: https://github.com/PathwayCommons/factoid Commit: 941e3e571f99f2098eb09a70cce1d83fedd2ce99 https://github.com/PathwayCommons/factoid/commit/941e3e571f99f2098eb09a70cce1d83fedd2ce99 Author: Jeffrey Wong Date: 2023-07-26 (Wed, 26

[PathwayCommons/factoid] 59178d: Query-string issue with comma-separated filter type.

Branch: refs/heads/iss961_preprint-support Home: https://github.com/PathwayCommons/factoid Commit: 59178d58ac9553373646ae27127b599d8d1102c9 https://github.com/PathwayCommons/factoid/commit/59178d58ac9553373646ae27127b599d8d1102c9 Author: Jeffrey Wong Date: 2023-07-25 (Tue, 25

[PathwayCommons/factoid] 338649: Bug in title comparison.

Branch: refs/heads/iss961_preprint-support Home: https://github.com/PathwayCommons/factoid Commit: 338649d595f05967709be135e86845c2c73b138f https://github.com/PathwayCommons/factoid/commit/338649d595f05967709be135e86845c2c73b138f Author: Jeffrey Wong Date: 2023-07-25 (Tue, 25

[PathwayCommons/factoid] 56d79c: Test case for partial title match

Branch: refs/heads/iss961_preprint-support Home: https://github.com/PathwayCommons/factoid Commit: 56d79cde64eba09fbf3cde051f2f159558fbc8fd https://github.com/PathwayCommons/factoid/commit/56d79cde64eba09fbf3cde051f2f159558fbc8fd Author: Jeffrey Wong Date: 2023-07-24 (Mon, 24

[PathwayCommons/factoid] 01ba44: Test cases for matching by DOI and title.

Branch: refs/heads/iss961_preprint-support Home: https://github.com/PathwayCommons/factoid Commit: 01ba4468eeef633c7fc07493622252f702edc490 https://github.com/PathwayCommons/factoid/commit/01ba4468eeef633c7fc07493622252f702edc490 Author: Jeffrey Wong Date: 2023-07-24 (Mon, 24

[PathwayCommons/factoid] 171dc2: Add crossref url to config

Branch: refs/heads/iss961_preprint-support Home: https://github.com/PathwayCommons/factoid Commit: 171dc28c2d4ba3353c3dfded1ef180b106a2c8a5 https://github.com/PathwayCommons/factoid/commit/171dc28c2d4ba3353c3dfded1ef180b106a2c8a5 Author: Jeffrey Wong Date: 2023-07-24 (Mon, 24

[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid] 4b5e5d: added query string and get(id) function, untested

Branch: refs/heads/master Home: https://github.com/PathwayCommons/factoid Commit: 4b5e5db24bb764a06b1d34aaf9a16d6adde68034 https://github.com/PathwayCommons/factoid/commit/4b5e5db24bb764a06b1d34aaf9a16d6adde68034 Author: Linda (Jia Wen) Li Date: 2023-04-03 (Mon, 03 Apr 2023

[PathwayCommons/factoid] ac7c9a: 0.24.0

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: ac7c9aefa1f1f6aa312bebede9a8e9836202b45d https://github.com/PathwayCommons/factoid/commit/ac7c9aefa1f1f6aa312bebede9a8e9836202b45d Author: Jeffrey Wong Date: 2023-07-04 (Tue, 04 Jul 2023

[PathwayCommons/factoid] ac7c9a: 0.24.0

Branch: refs/heads/v0.24.0 Home: https://github.com/PathwayCommons/factoid Commit: ac7c9aefa1f1f6aa312bebede9a8e9836202b45d https://github.com/PathwayCommons/factoid/commit/ac7c9aefa1f1f6aa312bebede9a8e9836202b45d Author: Jeffrey Wong Date: 2023-07-04 (Tue, 04 Jul 2023

[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid] b6fbb8: Declare a named complex entity type.

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: b6fbb8ac1da97d97e1163296f5a7979577a26780 https://github.com/PathwayCommons/factoid/commit/b6fbb8ac1da97d97e1163296f5a7979577a26780 Author: Jeffrey Wong Date: 2023-06-19 (Mon, 19 Jun 2023

[PathwayCommons/factoid] 683af8: Convert a namedComplex to a complex for BioPAX tem...

Branch: refs/heads/iss1181_named-complex Home: https://github.com/PathwayCommons/factoid Commit: 683af832aed2f9d6fbb041b939d41ddad40d1c67 https://github.com/PathwayCommons/factoid/commit/683af832aed2f9d6fbb041b939d41ddad40d1c67 Author: Jeffrey Wong Date: 2023-06-28 (Wed, 28

[PathwayCommons/factoid] ab0291: linting corrections.

Branch: refs/heads/iss1181_named-complex Home: https://github.com/PathwayCommons/factoid Commit: ab0291ef2a6fdc15b1dd055bcc980bfa4e7e92f2 https://github.com/PathwayCommons/factoid/commit/ab0291ef2a6fdc15b1dd055bcc980bfa4e7e92f2 Author: Jeffrey Wong Date: 2023-06-27 (Tue, 27

[PathwayCommons/factoid] e8d7e9: Distinguish complex, namedComplex and other with s...

Branch: refs/heads/iss1181_named-complex Home: https://github.com/PathwayCommons/factoid Commit: e8d7e9b44d6fa4fde8c363a1bc5dcb13c40a041f https://github.com/PathwayCommons/factoid/commit/e8d7e9b44d6fa4fde8c363a1bc5dcb13c40a041f Author: Jeffrey Wong Date: 2023-06-27 (Tue, 27

[PathwayCommons/factoid]

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[PathwayCommons/factoid] 0cd734: 0.23.1

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 0cd734736eff76015b57ede06aabc0543d788626 https://github.com/PathwayCommons/factoid/commit/0cd734736eff76015b57ede06aabc0543d788626 Author: Jeffrey Wong Date: 2023-06-23 (Fri, 23 Jun 2023

[PathwayCommons/factoid] 0cd734: 0.23.1

Branch: refs/heads/v0.23.2 Home: https://github.com/PathwayCommons/factoid Commit: 0cd734736eff76015b57ede06aabc0543d788626 https://github.com/PathwayCommons/factoid/commit/0cd734736eff76015b57ede06aabc0543d788626 Author: Jeffrey Wong Date: 2023-06-23 (Fri, 23 Jun 2023

[PathwayCommons/factoid] 0cd734: 0.23.1

Branch: refs/tags/v0.23.2 Home: https://github.com/PathwayCommons/factoid Commit: 0cd734736eff76015b57ede06aabc0543d788626 https://github.com/PathwayCommons/factoid/commit/0cd734736eff76015b57ede06aabc0543d788626 Author: Jeffrey Wong Date: 2023-06-23 (Fri, 23 Jun 2023

[PathwayCommons/factoid] ca4f95: Swap twitter with node-twitter-api-v2 package.

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: ca4f9542a180efbecda68550fe57188d17101863 https://github.com/PathwayCommons/factoid/commit/ca4f9542a180efbecda68550fe57188d17101863 Author: Jeffrey Wong Date: 2023-06-21 (Wed, 21 Jun 2023

[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid]

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[PathwayCommons/factoid] ae6929: Remove mention of Twitter bearer token.

Branch: refs/heads/iss1186_twitter-support Home: https://github.com/PathwayCommons/factoid Commit: ae6929ccdfc4df8f1c6a28e0a5b107b54b439f95 https://github.com/PathwayCommons/factoid/commit/ae6929ccdfc4df8f1c6a28e0a5b107b54b439f95 Author: Jeffrey Wong Date: 2023-06-21 (Wed, 21

[PathwayCommons/factoid] d217cb: Leave paper link as reply

Branch: refs/heads/iss1186_twitter-support Home: https://github.com/PathwayCommons/factoid Commit: d217cbbb2ea0b531e4cd68e88f09d59d128a9ba4 https://github.com/PathwayCommons/factoid/commit/d217cbbb2ea0b531e4cd68e88f09d59d128a9ba4 Author: Jeffrey Wong Date: 2023-06-21 (Wed, 21

[PathwayCommons/factoid] 61394c: Drop bearer token.

Branch: refs/heads/iss1186_twitter-support Home: https://github.com/PathwayCommons/factoid Commit: 61394c753c6c2560ef42e5931379c138bd1b1aa0 https://github.com/PathwayCommons/factoid/commit/61394c753c6c2560ef42e5931379c138bd1b1aa0 Author: Jeffrey Wong Date: 2023-06-21 (Wed, 21

[PathwayCommons/factoid] ca4f95: Swap twitter with node-twitter-api-v2 package.

Branch: refs/heads/iss1186_twitter-support Home: https://github.com/PathwayCommons/factoid Commit: ca4f9542a180efbecda68550fe57188d17101863 https://github.com/PathwayCommons/factoid/commit/ca4f9542a180efbecda68550fe57188d17101863 Author: Jeffrey Wong Date: 2023-06-21 (Wed, 21

[PathwayCommons/factoid]

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[PathwayCommons/factoid] b6fbb8: Declare a named complex entity type.

Branch: refs/heads/iss1181_named-complex Home: https://github.com/PathwayCommons/factoid Commit: b6fbb8ac1da97d97e1163296f5a7979577a26780 https://github.com/PathwayCommons/factoid/commit/b6fbb8ac1da97d97e1163296f5a7979577a26780 Author: Jeffrey Wong Date: 2023-06-19 (Mon, 19

[PathwayCommons/factoid]

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[PathwayCommons/factoid] 8481ce: 0.23.1

Branch: refs/heads/master Home: https://github.com/PathwayCommons/factoid Commit: 8481ce33c91f048b1581d6b2c395e2cb922d06ad https://github.com/PathwayCommons/factoid/commit/8481ce33c91f048b1581d6b2c395e2cb922d06ad Author: Max Franz Date: 2023-05-19 (Fri, 19 May 2023

[PathwayCommons/factoid] 8481ce: 0.23.1

Branch: refs/heads/releasev0.23.1 Home: https://github.com/PathwayCommons/factoid Commit: 8481ce33c91f048b1581d6b2c395e2cb922d06ad https://github.com/PathwayCommons/factoid/commit/8481ce33c91f048b1581d6b2c395e2cb922d06ad Author: Max Franz Date: 2023-05-19 (Fri, 19 May 2023

[PathwayCommons/factoid] ace55b: Show 'coming soon' message for articles in the exp...

Branch: refs/heads/master Home: https://github.com/PathwayCommons/factoid Commit: ace55bf0a77c3080897a42a2c658e9623af748cd https://github.com/PathwayCommons/factoid/commit/ace55bf0a77c3080897a42a2c658e9623af748cd Author: Max Franz Date: 2023-05-19 (Fri, 19 May 2023

[PathwayCommons/factoid] ace55b: Show 'coming soon' message for articles in the exp...

Branch: refs/heads/no-pubmed-data-fix Home: https://github.com/PathwayCommons/factoid Commit: ace55bf0a77c3080897a42a2c658e9623af748cd https://github.com/PathwayCommons/factoid/commit/ace55bf0a77c3080897a42a2c658e9623af748cd Author: Max Franz Date: 2023-05-19 (Fri, 19 May

[PathwayCommons/factoid] b37e60: Show 'coming soon' message for articles in the exp...

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: b37e604e82e46cf110dcad3d94449d49c6eb5d99 https://github.com/PathwayCommons/factoid/commit/b37e604e82e46cf110dcad3d94449d49c6eb5d99 Author: Max Franz Date: 2023-05-19 (Fri, 19 May 2023

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[PathwayCommons/factoid] 16859e: INDRA entity search is more generic (includes Famp...

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 16859e307ccc8087049ee4e621d875a739fef707 https://github.com/PathwayCommons/factoid/commit/16859e307ccc8087049ee4e621d875a739fef707 Author: Jeffrey Wong Date: 2023-05-15 (Mon, 15 May 2023

[PathwayCommons/factoid]

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[PathwayCommons/factoid] bbb6b0: Add member xrefs to the biopax export.

Branch: refs/heads/iss1181_famplex-family Home: https://github.com/PathwayCommons/factoid Commit: bbb6b063d853d7205071af069f54e23ffc3e0e51 https://github.com/PathwayCommons/factoid/commit/bbb6b063d853d7205071af069f54e23ffc3e0e51 Author: Jeffrey Wong Date: 2023-05-17 (Wed, 17

[PathwayCommons/factoid] 16859e: INDRA entity search is more generic (includes Famp...

Branch: refs/heads/iss1181_famplex-family Home: https://github.com/PathwayCommons/factoid Commit: 16859e307ccc8087049ee4e621d875a739fef707 https://github.com/PathwayCommons/factoid/commit/16859e307ccc8087049ee4e621d875a739fef707 Author: Jeffrey Wong Date: 2023-05-15 (Mon, 15

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[PathwayCommons/factoid] b6c210: users can run neo4j tests using `npm run neo4j-test`

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: b6c2100be56b9c7b7e801a49703a580fc0ab61f1 https://github.com/PathwayCommons/factoid/commit/b6c2100be56b9c7b7e801a49703a580fc0ab61f1 Author: Linda (Jia Wen) Li Date: 2023-04-14 (Fri, 14 Apr 2023

[PathwayCommons/factoid] 3b34d2: use transaction instead of executeRead/Write. Warn...

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: 3b34d2bf3c76027521d60348372e55be01bea8a8 https://github.com/PathwayCommons/factoid/commit/3b34d2bf3c76027521d60348372e55be01bea8a8 Author: Linda (Jia Wen) Li Date: 2023-04

[PathwayCommons/factoid] 8ec5dd: delete READ.me line about neo4j tests

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: 8ec5dd0ef65dbefa4399b0b6774b5cebddcf3670 https://github.com/PathwayCommons/factoid/commit/8ec5dd0ef65dbefa4399b0b6774b5cebddcf3670 Author: Linda (Jia Wen) Li Date: 2023-04

[PathwayCommons/factoid] 9ef8db: Use positional argument maxAge for cache set

Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 9ef8db9f91312fd47adfe5b66580c5f51139af3c https://github.com/PathwayCommons/factoid/commit/9ef8db9f91312fd47adfe5b66580c5f51139af3c Author: Jeffrey Wong Date: 2023-04-24 (Mon, 24 Apr 2023

[PathwayCommons/factoid] f7b1a1: small change with async/await in test-functions

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: f7b1a1e9d938ab66af5f2b450d296392c418bfc3 https://github.com/PathwayCommons/factoid/commit/f7b1a1e9d938ab66af5f2b450d296392c418bfc3 Author: Linda (Jia Wen) Li Date: 2023-04

[PathwayCommons/factoid] 71cb74: Support an 'entity' type in the grounding tool

Branch: refs/heads/entity-grounding-ui-support Home: https://github.com/PathwayCommons/factoid Commit: 71cb7425ba8dcb908f4610b1608c1382a4dec3c0 https://github.com/PathwayCommons/factoid/commit/71cb7425ba8dcb908f4610b1608c1382a4dec3c0 Author: Jeffrey Wong Date: 2023-04-25 (Tue

[PathwayCommons/factoid] 7d3a59: move docker-compose.yml and .env to parent directory

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: 7d3a59022c8fc9d287047393eb022d8aa7181919 https://github.com/PathwayCommons/factoid/commit/7d3a59022c8fc9d287047393eb022d8aa7181919 Author: Linda (Jia Wen) Li Date: 2023-04

[PathwayCommons/factoid] 9ef8db: Use positional argument maxAge for cache set

Branch: refs/heads/iss1151_set-maxAge Home: https://github.com/PathwayCommons/factoid Commit: 9ef8db9f91312fd47adfe5b66580c5f51139af3c https://github.com/PathwayCommons/factoid/commit/9ef8db9f91312fd47adfe5b66580c5f51139af3c Author: Jeffrey Wong Date: 2023-04-24 (Mon, 24 Apr

[PathwayCommons/factoid]

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[PathwayCommons/factoid] c5f9f1: small change with async/await in neo4j-functions.js

Branch: refs/heads/iss1174-neo4j-update-readme Home: https://github.com/PathwayCommons/factoid Commit: c5f9f13cccb768b50494b6af024ea5e23bfd9791 https://github.com/PathwayCommons/factoid/commit/c5f9f13cccb768b50494b6af024ea5e23bfd9791 Author: Linda (Jia Wen) Li Date: 2023-04

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