Re: [deal.II] VMult-function in the MatrixFree-Framework

2019-07-23 Thread Daniel Arndt
Maxi, No, that code is the vmult-call I am using in my LinearOperator (and is > used directly in my solve()-call). The calculate_residual()-function is > similar to the function in step-15, with the difference, that I do not > provide alpha, but the vector, and return the calculated residual

Re: [deal.II] Step-40 fails with "PETSc preconditioner should have anassociated matrix set to be used in solver"

2019-07-23 Thread Daniel Arndt
Pandey, > > [...] > > An error occurred in line <88> of file > in > function > void dealii::PETScWrappers::SolverBase::solve(const > dealii::PETScWrappers::MatrixBase&, dealii::PETScWrappers::VectorBase&, > const

Re: [deal.II] Re: Matrix-Vector-multiplication on deal.II-grid

2019-07-23 Thread 'Maxi Miller' via deal.II User Group
I took a look at your (incomplete) step-58, which (as far as I could understand) solves the equation, but without propagating it in space, just in time. I would like to propagate the result in time and accordingly in space, i.e. if the pulse propagates through a fiber, I would like to see the

Re: [deal.II] VMult-function in the MatrixFree-Framework

2019-07-23 Thread 'Maxi Miller' via deal.II User Group
No, that code is the vmult-call I am using in my LinearOperator (and is used directly in my solve()-call). The calculate_residual()-function is similar to the function in step-15, with the difference, that I do not provide alpha, but the vector, and return the calculated residual value. Thus,

Re: [deal.II] Re: Matrix-Vector-multiplication on deal.II-grid

2019-07-23 Thread Wolfgang Bangerth
On 7/22/19 1:32 AM, 'Maxi Miller' via deal.II User Group wrote: > More or less, yes, together with how I could get the "column" vector I would > like to apply the matrix to. It is not a problem to do that in a > FTDT-setting, > but I do not know how to do that in a FEM-setting. When you say

Re: [deal.II] Code tries to access DoF indices on artificial cells, even though those cells should not be artificial

2019-07-23 Thread Wolfgang Bangerth
On 7/22/19 5:23 AM, 'Maxi Miller' via deal.II User Group wrote: > Furthermore, based on my understanding, I have to loop over all cells in > order > to assemble the multigrid-matrices, but can only aquire the gradients on the > current cell if it is active. Wouldn't that crash (looping and

Re: [deal.II] VMult-function in the MatrixFree-Framework

2019-07-23 Thread Daniel Arndt
> My aim is to implement the jacobian approximation, i.e. (if F(u) = 0 is > the function to solve) I wanted to implement > dst = (F(current_solution + epsilon * src) - F(current_solution))/epsilon. > In my LinearOperator, my code is > LinearOperator jacobian_operator; > jacobian_operator.vmult =

Re: [deal.II] VMult-function in the MatrixFree-Framework

2019-07-23 Thread 'Maxi Miller' via deal.II User Group
My aim is to implement the jacobian approximation, i.e. (if F(u) = 0 is the function to solve) I wanted to implement dst = (F(current_solution + epsilon * src) - F(current_solution))/epsilon. In my LinearOperator, my code is LinearOperator jacobian_operator; jacobian_operator.vmult =

[deal.II] Step-40 fails with "PETSc preconditioner should have anassociated matrix set to be used in solver"

2019-07-23 Thread 'PRAKARSH PANDEY' via deal.II User Group
Hi, I am having issues with using PETSC iterative solvers. I follow the steps in Step40 exactly, and I get: PETSc preconditioner should have an associated matrix set to be used in solver. I do set the preconditioner correctly, exactly as shown in Step40. I am able to reproduce this error by

Re: [deal.II] VMult-function in the MatrixFree-Framework

2019-07-23 Thread Daniel Arndt
> >- When using the LinearOperator, the function vmult() is used when >solving the system with a GMRES-solver (or similar). Does the same hold up >for the MatrixFree-framework? > > Yes. > >- If the above is correct: In each GMRES-iteration I have to calculate >the residual of

Re: [deal.II] Different solution with different software

2019-07-23 Thread Daniel Arndt
Felix, > Is the rate of convergence as expected? >> > > I believe so. I did a linear regression of the convergence graphs in > logscale and got a value of : > -7.6 for the speed : I believe it corresponds to the -8 from second order > finete element in 2D > -3.2 for the pressure : I beliebe it

[deal.II] VMult-function in the MatrixFree-Framework

2019-07-23 Thread 'Maxi Miller' via deal.II User Group
In my project I already managed to replace the system_matrix in the solve()-call by a custom LinearOperator, but still I had to retain the matrix itself (for the preconditioner, for example). Thus I am now trying to use the MatrixFree-framework for that. Thus, some questions arose: - When

Re: [deal.II] Different solution with different software

2019-07-23 Thread Félix Bunel
> I have tried a simple testcase for my problem. >> I don't know if it's suitable as a testcase but if I use X=0 in my >> equations above, I know the solution. >> >> The solutions is u = v = 0, \phi = (1-x^2 -y^2) and the pressure is then >> P = 8 \phi_lin^2 (1-x²-y²) >> It fits with my