Re: [deal.II] Visit sees *.vtu-files as 3d-files instead of 2d-files for n > 16 threads

2018-09-20 Thread 'Maxi Miller' via deal.II User Group
I did several more experiments, using both my program and example programs from deal.II (such as step-40 and step-55). When using my program, I still got the same result as before, if I have more than 16 threads, then my result gets interpreted as 3d, not as 2d. When using step-55, I can use 24

Re: [deal.II] Can GridIn read 3D quad mesh?

2018-09-20 Thread Yuxiang Wang
That's so fast! Thank you Jean-Paul :) Shawn On Thursday, September 20, 2018 at 1:20:46 AM UTC-7, Jean-Paul Pelteret wrote: > > Dear Shawn, > > No, its fine. I see that the changes weren’t as drastic as I thought > they’d be, so I think that the boundary ID assignment will work out of the > bo

Re: [deal.II] Update of Ubuntu

2018-09-20 Thread Aquaman
Dear Prof. Arndt, many thanks for your support! as you suggested, I have tested step-40, it works well. But in folder cracks, If I run mpirun -n 2 ./cracks parameters_sneddon_2d.prm I received the same error infos Fatal error in PMPI_Init_thread: Other MPI error, error stack: MPIR_Ini

[deal.II] deal.II Newsletter #49

2018-09-20 Thread Rene Gassmoeller
Hello everyone! This is deal.II newsletter #49. It automatically reports recently merged features and discussions about the deal.II finite element library. ## Below you find a list of recently proposed or merged features: #7220: Fix zeroing of vector in MatrixFree::loop (proposed by kronbichle

Re: [deal.II] Animation with gnuplot

2018-09-20 Thread Wolfgang Bangerth
On 09/20/2018 04:15 AM, Praveen C wrote: > You could create png files and make a movie out of them. ...for which you can use the 'convert' program (part of the imagemagick package), which can be used to do something like convert *.png my-movie.mp4 Best W. -- --

Re: [deal.II] Update of Ubuntu

2018-09-20 Thread Jean-Paul Pelteret
Dear Yaakov, > Thanks a lot for your answer! You’re welcome. It was succinct, but at least I think that it might have helped identify the problem ;-) > 1. I use candi for the installation, I think I have to rebuilt deal.ii again. Yes, I agree. Typically a major system upgrade would require th

Re: [deal.II] Update of Ubuntu

2018-09-20 Thread Daniel Arndt
Yaakov, > 1. I use candi for the installation, I think I have to rebuilt deal.ii > again. > Yes, definitely! > > 2. The error should be related to MPI. > What Jean-Paul meant to say is that there is nothing like "Dealii input files by Heister & Wick". You are probably referring to the crac

Re: [deal.II] Update of Ubuntu

2018-09-20 Thread Aquaman
Dear Dr. Pelteret, Thanks a lot for your answer! 1. I use candi for the installation, I think I have to rebuilt deal.ii again. 2. The error should be related to MPI. Kind regards, Yaakov On Thursday, September 20, 2018 at 3:02:08 PM UTC+2, Jean-Paul Pelteret wrote: > > Dear Yaakov, > > Re

Re: [deal.II] Update of Ubuntu

2018-09-20 Thread Jean-Paul Pelteret
Dear Yaakov, > Recently, I have updated Ubuntu Where does your deal.II installation come from? If you’ve compiled it yourself, then have you rebuilt deal.II and its entries dependency list? With a distribution update often comes an update in the compiler as well as other dependencies. > Deali

[deal.II] Update of Ubuntu

2018-09-20 Thread Aquaman
Dear All, Recently, I have updated Ubuntu, after that, when I test Dealii input files by Heister & Wick, I get the following error: MPIR_Init_thread(474)...: MPID_Init(190)..: channel initialization failed MPIDI_CH3_Init(89)..: MPID_nem_init(413)..: MPIDI_nem_ckpt_init(170

Re: [deal.II] Animation with gnuplot

2018-09-20 Thread Praveen C
Suppose you have data files named sol_0.gpl sol_1.gpl etc. Following gnuplot script will plot column 1 vs 2 and animate them. reset unset key set grid filename(n) = sprintf("sol_%d.gpl",n) N=system("ls -1 sol_*.gpl | wc -l") do for [i=0:N-1] { plot filename(i) u 1:2 w l lw 2 pause 0.2 } Y

Re: [deal.II] Animation with gnuplot

2018-09-20 Thread Jean-Paul Pelteret
A quick google search came up with this result: http://www.gnuplotting.org/tag/animation/ Does this answer your question? > On 20 Sep 2018, at 12:00, chandra sekhar yaswanth devarakonda > wrote: > > Can anyone tell me how to create a movie with a 3

[deal.II] Animation with gnuplot

2018-09-20 Thread chandra sekhar yaswanth devarakonda
Can anyone tell me how to create a movie with a 320 .gnuplot files? I run step-23 and I got 320 files with .gnuplot extension. I want to see the animation of these files. regards D.CHANDRASEKHAR YASWANTH -- The deal.II project is located at http://www.dealii.org/ For mailing list/foru

Re: [deal.II] Can GridIn read 3D quad mesh?

2018-09-20 Thread Jean-Paul Pelteret
Dear Shawn, No, its fine. I see that the changes weren’t as drastic as I thought they’d be, so I think that the boundary ID assignment will work out of the box (I’d forgotten that someone else had already done much of the work necessary to support codim-1). I’ve made a patch to add this funct