[deal.II] Re: Installation error, unable to configure with p4est

2019-10-05 Thread vachan potluri
> > Yes, you can likely ignore the error. If you really want to run this > quicktest, you can change > make_quicktest("p4est" ${_mybuild} 10) > to > make_quicktest("p4est" ${_mybuild} 4) > in tests/quick_tests/CMakeLists.txt. This works. Thanks. -- The deal.II project is located at

Re: [deal.II] Merging meshes and empty triangulation

2019-10-05 Thread Daniel Arndt
Erik, Can you share your code and your mesh with us? Best, Daniel Am Sa., 5. Okt. 2019 um 20:30 Uhr schrieb Erik Fujiyama < erikfujiy...@gmail.com>: > Hello, I think I'm having a similar problem to the OP. I searched a lot, > but that's the closest that I could find. I'm trying to work with

Re: [deal.II] installation fails with intel/19.0.5

2019-10-05 Thread Timo Heister
Victor, this might a bit too specific for the mailing list, but I detail my installation steps for deal.II+ASPECT on Frontera here: https://github.com/geodynamics/aspect/wiki/Installation-on-Frontera (Trilinos and p4est, I don't need PETSc right now) On Sat, Oct 5, 2019 at 7:09 PM Victor

Re: [deal.II] Merging meshes and empty triangulation

2019-10-05 Thread Erik Fujiyama
Hello, I think I'm having a similar problem to the OP. I searched a lot, but that's the closest that I could find. I'm trying to work with some meshes from gmsh, so I used the gridin functions to read them. Triangulation triangulation; GridIn gridin;

Re: [deal.II] installation fails with intel/19.0.5

2019-10-05 Thread Victor Eijkhout
On Oct 5, 2019, at 4:13 PM, Timo Heister mailto:timo.heis...@gmail.com>> wrote: -D DEAL_II_WITH_MPI=ON \ -D DEAL_II_CXX_FLAGS="-march=native" \ -D DEAL_II_WITH_CXX17=OFF \ -D DEAL_II_WITH_64BIT_INDICES=ON \ -D DEAL_II_COMPONENT_EXAMPLES=OFF \ -D

Re: [deal.II] installation fails with intel/19.0.5

2019-10-05 Thread Timo Heister
CC=mpicc CXX=mpicxx cmake \ -D DEAL_II_WITH_MPI=ON \ -D DEAL_II_CXX_FLAGS="-march=native" \ -D DEAL_II_WITH_CXX17=OFF \ -D DEAL_II_WITH_64BIT_INDICES=ON \ -D DEAL_II_COMPONENT_EXAMPLES=OFF \ -D CMAKE_INSTALL_PREFIX=`pwd`/install \ ../../deal-git This is with

Re: [deal.II] Error during refinement of a parallel distibuted quarter hyperball

2019-10-05 Thread Daniel Arndt
Stefan, I am getting Abort: Expected '(int) edge_trees - (int) ta->elem_count': 'p8est_find_edge_transform_internal (conn, itree, iedge, ei, conn->edge_to_tree + ettae, conn->edge_to_edge + ettae, edge_trees)' Abort: /home/darndt/Sources/p4est-2.2/src/p8est_connectivity.c: Abort

Re: [deal.II] Re: Installation error, unable to configure with p4est

2019-10-05 Thread Daniel Arndt
Vachan, [...] > However, > make test > for p4est failed with the following message > There are not enough slots available in the system to satisfy the 10 slots > that were requested by the application: > ./p4est.debug > > Either request fewer slots for your application, or make more slots >

Re: [deal.II] Re: Move vertices in P::D::Triangulation

2019-10-05 Thread Daniel Arndt
huyanzhou, in the documentation , it's said in the case of mesh with moved vertices is > refined a few step later, should do as follows: > 1. save the offset applied to every vertex, > 2. call communicate_locally_moved_vertices function > 3. apply the opposite offset > 4. call communicate_local

[deal.II] Re: Move vertices in P::D::Triangulation

2019-10-05 Thread huyanzhuo
hello! in the documentation , it's said in the case of mesh with moved vertices is refined a few step later, should do as follows: 1. save the offset applied to every vertex, 2. call communicate_locally_moved_vertices function 3. apply the opposite offset 4. call communicate_local refining or

Re: [deal.II] some question about the move mesh function

2019-10-05 Thread Daniel Arndt
huyanzhou, I try to use the communicate_locally_moved_vertices, it fixes the departure > of mesh belongs to different mesh . but there still remains some problem > [...] > you can see that the mesh is consistent on the boundry, but not smooth in > the inner mesh ,there are some shallow hole on

Re: [deal.II] installation fails with intel/19.0.5

2019-10-05 Thread Victor Eijkhout
On Oct 5, 2019, at 9:27 AM, Timo Heister mailto:heis...@clemson.edu>> wrote: Otherwise I have no problem running with 19.0.5 on Frontera. Dictate me you cmake line? Victor. -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see

Re: [deal.II] installation fails with intel/19.0.5

2019-10-05 Thread Timo Heister
Victor, see https://github.com/dealii/dealii/issues/8755 that details that you need to disable CXX17 with Intel 19.0.5 for now. Otherwise I have no problem running with 19.0.5 on Frontera. On Tue, Oct 1, 2019 at 1:13 AM Daniel Arndt wrote: > > Victor, > > >> But I’m still not finishing the

Re: [deal.II] some question about the move mesh function

2019-10-05 Thread huyanzhuo
thanks very much for your reply! I try to use the communicate_locally_moved_vertices, it fixes the departure of mesh belongs to different mesh . but there still remains some problem [image: 789.png] you can see that the mesh is consistent on the boundry, but not smooth in the inner mesh