from:"kaleem iqbal"

Re: [deal.II] Re: Configuring deal.II with LAPACK

2021-02-21 Thread kaleem iqbal

https://github.com/dealii/candi. Best installation link for all libraries
required for deal ii.


On Sat, Feb 20, 2021 at 11:57 PM Giselle Sosa Jones 
wrote:

> Hi Bruno,
>
> Thank you for your reply. I tried this but got the same error as before. I
> am not sure what's happening since I am using PETSc with Intel mkl in other
> software, and it works fine there. Do you happen to have any other
> suggestions? Maybe it is an issue with Intel mkl?
>
> Thanks again.
>
> Best,
> Giselle
>
> On Fri, 19 Feb 2021 at 14:11, Bruno Turcksin 
> wrote:
>
>> Giselle,
>>
>> Instead of setting the library yourself can you try:
>> -DBLAS_LIBRARY_NAMES:STRING='mkl_core;mkl_sequential'  
>> -DLAPACK_LIBRARY_NAMES:STRING=mkl_intel_lp64
>>
>> Don't set BLAS/LAPACK_FOUND/LIBRARIES/LINKER_FLAGS. Let CMake find the
>> libraries and the flags it needs to use.
>>
>> Best,
>>
>> Bruno
>>
>>
>> On Thursday, February 18, 2021 at 6:46:57 PM UTC-5 gisel...@gmail.com
>> wrote:
>>
>>> Hello,
>>>
>>> I am trying to configure deal.II with LAPACK using the following command:
>>>
>>>  cmake
>>> -DCMAKE_INSTALL_PREFIX=/mnt/c/Users/Giselle/Documents/dealii_install
>>> /mnt/c/Users/Giselle/Documents/dealii -DDEAL_II_WITH_PETSC=ON
>>> -DPETSC_DIR=$PETSC_DIR -DDEAL_II_WITH_UMFPACK=ON -DUMFPACK_DIR=$PETSC_DIR
>>> -DDEAL_II_WITH_LAPACK=ON -DLAPACK_FOUND=true
>>> -DLAPACK_LIBRARIES="/home/giselle/intel/mkl/lib/intel64/libmkl_blas95_lp64.a;\
>>>
>>> /home/giselle/intel/mkl/lib/intel64/libmkl_lapack95_lp64.a;/home/giselle/intel/mkl/lib/intel64/libmkl_gf_lp64.a;\
>>>
>>> /home/giselle/intel/mkl/lib/intel64/libmkl_intel_lp64.so;/home/giselle/intel/mkl/lib/intel64/libmkl_sequential.so;\
>>> /home/giselle/intel/mkl/lib/intel64/libmkl_core.so"
>>> -DLAPACK_LINKER_FLAGS="-lgfortran -lm" -DDEAL_II_WITH_BLAS=ON
>>> -DBLAS_FOUND=true
>>> -DBLAS_LIBRARIES="/home/giselle/intel/mkl/lib/intel64/libmkl_blas95_lp64.a;\
>>>
>>> /home/giselle/intel/mkl/lib/intel64/libmkl_lapack95_lp64.a;/home/giselle/intel/mkl/lib/intel64/libmkl_gf_lp64.a;\
>>>
>>> /home/giselle/intel/mkl/lib/intel64/libmkl_intel_lp64.so;/home/giselle/intel/mkl/lib/intel64/libmkl_sequential.so;\
>>> /home/giselle/intel/mkl/lib/intel64/libmkl_core.so"
>>> -DBLAS_LINKER_FLAGS="-lgfortran -lm"
>>>
>>> I am getting the following message:
>>>
>>> Could not find the lapack library!
>>>
>>>   Could not find a sufficient BLAS/LAPACK installation:
>>>
>>>   BLAS/LAPACK symbol check failed! This usually means that your
>>> BLAS/LAPACK
>>>   installation is incomplete or the link line is broken.
>>>
>>> Attached you will also find the CMakeError.log and CMakeOutput.log
>>> files. Does anyone have any idea of what could be going on? I think it has
>>> something to do with the linker flags but I have no idea and I've tried
>>> everything I could think of.
>>>
>>> Thank you so much!
>>>
>>> Regards,
>>> Giselle
>>>
>>> --
>> The deal.II project is located at http://www.dealii.org/
>> For mailing list/forum options, see
>> https://groups.google.com/d/forum/dealii?hl=en
>> ---
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>> 
>> .
>>
> --
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> 
> .
>

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[deal.II] Re: deal.II discussion group: Feedback and guidelines

2020-08-06 Thread kaleem iqbal

The following error shown in step-49 during make run.
Exception on processing: 


An error occurred in line <1430> of file 
 
in function
void dealii::GridIn::read_msh(std::istream&) [with int 
dim = 2; int spacedim = 2; std::istream = std::basic_istream]
The violated condition was: 
in
Additional information: 
An input/output error has occurred. There are a number of reasons why 
this may be happening, both for reading and writing operations.

If this happens during an operation that tries to read data: First, you may 
be trying to read from a file that doesn't exist or that is not readable 
given its file permissions. Second, deal.II uses this error at times if it 
tries to read information from a file but where the information in the file 
does not correspond to the expected format. An example would be a truncated 
file, or a mesh file that contains not only sections that describe the 
vertices and cells, but also sections for additional data that deal.II does 
not understand.

If this happens during an operation that tries to write data: you may be 
trying to write to a file to which file or directory permissions do not 
allow you to write. A typical example is where you specify an output file 
in a directory that does not exist.


Aborting!

CMakeFiles/run.dir/build.make:57: recipe for target 'CMakeFiles/run' failed
make[3]: *** [CMakeFiles/run] Error 1
CMakeFiles/Makefile2:131: recipe for target 'CMakeFiles/run.dir/all' failed
make[2]: *** [CMakeFiles/run.dir/all] Error 2
CMakeFiles/Makefile2:138: recipe for target 'CMakeFiles/run.dir/rule' failed
make[1]: *** [CMakeFiles/run.dir/rule] Error 2
Makefile:144: recipe for target 'run' failed
make: *** [run] Error 2

Regard's
Kaleem iqbal

-- 
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[deal.II] Re: Getting started and posting guidelines for new users

2020-08-05 Thread kaleem iqbal

The following error shown in step-49 during make run.
Exception on processing: 


An error occurred in line <1430> of file 
 
in function
void dealii::GridIn::read_msh(std::istream&) [with int 
dim = 2; int spacedim = 2; std::istream = std::basic_istream]
The violated condition was: 
in
Additional information: 
An input/output error has occurred. There are a number of reasons why 
this may be happening, both for reading and writing operations.

If this happens during an operation that tries to read data: First, you may 
be trying to read from a file that doesn't exist or that is not readable 
given its file permissions. Second, deal.II uses this error at times if it 
tries to read information from a file but where the information in the file 
does not correspond to the expected format. An example would be a truncated 
file, or a mesh file that contains not only sections that describe the 
vertices and cells, but also sections for additional data that deal.II does 
not understand.

If this happens during an operation that tries to write data: you may be 
trying to write to a file to which file or directory permissions do not 
allow you to write. A typical example is where you specify an output file 
in a directory that does not exist.


Aborting!

CMakeFiles/run.dir/build.make:57: recipe for target 'CMakeFiles/run' failed
make[3]: *** [CMakeFiles/run] Error 1
CMakeFiles/Makefile2:131: recipe for target 'CMakeFiles/run.dir/all' failed
make[2]: *** [CMakeFiles/run.dir/all] Error 2
CMakeFiles/Makefile2:138: recipe for target 'CMakeFiles/run.dir/rule' failed
make[1]: *** [CMakeFiles/run.dir/rule] Error 2
Makefile:144: recipe for target 'run' failed
make: *** [run] Error 2

Regard's
Kaleem iqbal

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2020-07-30 Thread kaleem iqbal

I want to simulate FSI with elastic walls in bifurcation carotid arteries
in 2D. is it possible to use that geometry?


On Thu, Jul 30, 2020 at 2:54 PM kaleem iqbal  wrote:

> thanks for the reply. simulation run
>
>
> On Thu, Jul 30, 2020 at 2:18 PM Luca Heltai  wrote:
>
>> Take a look at your parameter file. It is probably trying to write output
>> file to a directory that does not exist.
>>
>> Luca
>>
>> Il giorno 30 lug 2020, alle ore 10:58, kaleem iqbal <
>> kaleemiqb...@gmail.com> ha scritto:
>>
>> 
>> Dear Prof. Wolfgang;
>> During running step-70. I found the following error
>> Exception on processing:
>>
>> 
>> An error occurred in line <1360> of file
>> 
>> in function
>> void dealii::ParameterHandler::print_parameters(const string&,
>> dealii::ParameterHandler::OutputStyle) const
>> The violated condition was:
>> out
>> Additional information:
>> An input/output error has occurred. There are a number of reasons why
>> this may be happening, both for reading and writing operations.
>>
>> If this happens during an operation that tries to read data: First, you
>> may be trying to read from a file that doesn't exist or that is not
>> readable given its file permissions. Second, deal.II uses this error at
>> times if it tries to read information from a file but where the information
>> in the file does not correspond to the expected format. An example would be
>> a truncated file, or a mesh file that contains not only sections that
>> describe the vertices and cells, but also sections for additional data that
>> deal.II does not understand.
>>
>> If this happens during an operation that tries to write data: you may be
>> trying to write to a file to which file or directory permissions do not
>> allow you to write. A typical example is where you specify an output file
>> in a directory that does not exist.
>> 
>>
>> Aborting!
>> 
>> CMakeFiles/run.dir/build.make:57: recipe for target 'CMakeFiles/run'
>> failed
>> make[3]: *** [CMakeFiles/run] Error 1
>> CMakeFiles/Makefile2:131: recipe for target 'CMakeFiles/run.dir/all'
>> failed
>> make[2]: *** [CMakeFiles/run.dir/all] Error 2
>> CMakeFiles/Makefile2:138: recipe for target 'CMakeFiles/run.dir/rule'
>> failed
>> make[1]: *** [CMakeFiles/run.dir/rule] Error 2
>> Makefile:144: recipe for target 'run' failed
>> make: *** [run] Error 2
>> Please guide me
>> Regards
>> Kaleem iqbal
>>
>> --
>> The deal.II project is located at http://www.dealii.org/
>> For mailing list/forum options, see
>> https://groups.google.com/d/forum/dealii?hl=en
>> ---
>> You received this message because you are subscribed to the Google Groups
>> "deal.II User Group" group.
>> To unsubscribe from this group and stop receiving emails from it, send an
>> email to dealii+unsubscr...@googlegroups.com.
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>> https://groups.google.com/d/msgid/dealii/168928f6-65e2-40e2-924a-84bfe514e2bco%40googlegroups.com
>> <https://groups.google.com/d/msgid/dealii/168928f6-65e2-40e2-924a-84bfe514e2bco%40googlegroups.com?utm_medium=email_source=footer>
>> .
>>
>> --
>> The deal.II project is located at http://www.dealii.org/
>> For mailing list/forum options, see
>> https://groups.google.com/d/forum/dealii?hl=en
>> ---
>> You received this message because you are subscribed to the Google Groups
>> "deal.II User Group" group.
>> To unsubscribe from this group and stop receiving emails from it, send an
>> email to dealii+unsubscr...@googlegroups.com.
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>> https://groups.google.com/d/msgid/dealii/2E791A8D-2E6F-4FF2-A232-0ABDD68618BF%40gmail.com
>> <https://groups.google.com/d/msgid/dealii/2E791A8D-2E6F-4FF2-A232-0ABDD68618BF%40gmail.com?utm_medium=email_source=footer>
>> .
>>
>

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2020-07-30 Thread kaleem iqbal

thanks for the reply. simulation run


On Thu, Jul 30, 2020 at 2:18 PM Luca Heltai  wrote:

> Take a look at your parameter file. It is probably trying to write output
> file to a directory that does not exist.
>
> Luca
>
> Il giorno 30 lug 2020, alle ore 10:58, kaleem iqbal <
> kaleemiqb...@gmail.com> ha scritto:
>
> 
> Dear Prof. Wolfgang;
> During running step-70. I found the following error
> Exception on processing:
>
> 
> An error occurred in line <1360> of file
> 
> in function
> void dealii::ParameterHandler::print_parameters(const string&,
> dealii::ParameterHandler::OutputStyle) const
> The violated condition was:
> out
> Additional information:
> An input/output error has occurred. There are a number of reasons why
> this may be happening, both for reading and writing operations.
>
> If this happens during an operation that tries to read data: First, you
> may be trying to read from a file that doesn't exist or that is not
> readable given its file permissions. Second, deal.II uses this error at
> times if it tries to read information from a file but where the information
> in the file does not correspond to the expected format. An example would be
> a truncated file, or a mesh file that contains not only sections that
> describe the vertices and cells, but also sections for additional data that
> deal.II does not understand.
>
> If this happens during an operation that tries to write data: you may be
> trying to write to a file to which file or directory permissions do not
> allow you to write. A typical example is where you specify an output file
> in a directory that does not exist.
> 
>
> Aborting!
> 
> CMakeFiles/run.dir/build.make:57: recipe for target 'CMakeFiles/run' failed
> make[3]: *** [CMakeFiles/run] Error 1
> CMakeFiles/Makefile2:131: recipe for target 'CMakeFiles/run.dir/all' failed
> make[2]: *** [CMakeFiles/run.dir/all] Error 2
> CMakeFiles/Makefile2:138: recipe for target 'CMakeFiles/run.dir/rule'
> failed
> make[1]: *** [CMakeFiles/run.dir/rule] Error 2
> Makefile:144: recipe for target 'run' failed
> make: *** [run] Error 2
> Please guide me
> Regards
> Kaleem iqbal
>
> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see
> https://groups.google.com/d/forum/dealii?hl=en
> ---
> You received this message because you are subscribed to the Google Groups
> "deal.II User Group" group.
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> <https://groups.google.com/d/msgid/dealii/168928f6-65e2-40e2-924a-84bfe514e2bco%40googlegroups.com?utm_medium=email_source=footer>
> .
>
> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see
> https://groups.google.com/d/forum/dealii?hl=en
> ---
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> .
>

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2020-07-30 Thread kaleem iqbal

Dear Prof. Wolfgang; 
During running step-70. I found the following error  
Exception on processing: 


An error occurred in line <1360> of file 

 
in function
void dealii::ParameterHandler::print_parameters(const string&, 
dealii::ParameterHandler::OutputStyle) const
The violated condition was: 
out
Additional information: 
An input/output error has occurred. There are a number of reasons why 
this may be happening, both for reading and writing operations.

If this happens during an operation that tries to read data: First, you may 
be trying to read from a file that doesn't exist or that is not readable 
given its file permissions. Second, deal.II uses this error at times if it 
tries to read information from a file but where the information in the file 
does not correspond to the expected format. An example would be a truncated 
file, or a mesh file that contains not only sections that describe the 
vertices and cells, but also sections for additional data that deal.II does 
not understand.

If this happens during an operation that tries to write data: you may be 
trying to write to a file to which file or directory permissions do not 
allow you to write. A typical example is where you specify an output file 
in a directory that does not exist.


Aborting!

CMakeFiles/run.dir/build.make:57: recipe for target 'CMakeFiles/run' failed
make[3]: *** [CMakeFiles/run] Error 1
CMakeFiles/Makefile2:131: recipe for target 'CMakeFiles/run.dir/all' failed
make[2]: *** [CMakeFiles/run.dir/all] Error 2
CMakeFiles/Makefile2:138: recipe for target 'CMakeFiles/run.dir/rule' failed
make[1]: *** [CMakeFiles/run.dir/rule] Error 2
Makefile:144: recipe for target 'run' failed
make: *** [run] Error 2
Please guide me
Regards
Kaleem iqbal

-- 
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Re: [deal.II] Re: Configuring deal.II with LAPACK

[deal.II] Re: deal.II discussion group: Feedback and guidelines

[deal.II] Re: Getting started and posting guidelines for new users

Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

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