[deal.II] Issue with Boost 1.75.0

[Edward Read]

 
Hello Everyone,

I am working on installing Deal.II on my linux box and am now receiving the 
following:

[ 79%] Built target deal_II.g
Scanning dependencies of target step-74.debug
[ 79%] Building CXX object 
examples/CMakeFiles/step-74.debug.dir/step-74/step-74.cc.o
[ 79%] Building CXX object 
source/matrix_free/CMakeFiles/obj_matrix_free_release.dir/mapping_info_inst3.cc.o
[ 79%] Building CXX object 
source/matrix_free/CMakeFiles/obj_matrix_free_release.dir/matrix_free.cc.o
[ 79%] Linking CXX executable ../bin/step-74.debug
[ 79%] Building CXX object 
source/matrix_free/CMakeFiles/obj_matrix_free_release.dir/shape_info.cc.o
[ 79%] Building CXX object 
source/matrix_free/CMakeFiles/obj_matrix_free_release.dir/task_info.cc.o
[ 79%] Building CXX object 
source/matrix_free/CMakeFiles/obj_matrix_free_release.dir/vector_data_exchange.cc.o
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::detail::zlib_base::zlib_base()'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::detail::gzip_header::process(char)'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::zlib_error::check(int)'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::zlib::best_speed'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::zlib::default_compression'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::detail::zlib_base::reset(bool, bool)'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::detail::zlib_base::xdeflate(int)'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::zlib::sync_flush'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::zlib::okay'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::zlib::finish'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::zlib::no_flush'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::zlib::stream_end'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::detail::zlib_base::do_init(boost::iostreams::zlib_params 
const&, bool, void* (*)(void*, unsigned int, unsigned int), void (*)(void*, 
void*), void*)'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::zlib::best_compression'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::detail::zlib_base::~zlib_base()'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::detail::zlib_base::before(char const*&, char const*, 
char*&, char*)'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::detail::zlib_base::after(char const*&, char*&, bool)'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::detail::gzip_footer::reset()'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::detail::zlib_base::xinflate(int)'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::zlib::default_strategy'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::detail::gzip_header::reset()'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::detail::gzip_footer::process(char)'
../lib/libdeal_II.g.so.9.3.0-pre: undefined reference to 
`boost::iostreams::zlib::deflated'
collect2: error: ld returned 1 exit status
examples/CMakeFiles/step-74.debug.dir/build.make:240: recipe for target 
'bin/step-74.debug' failed
make[2]: *** [bin/step-74.debug] Error 1
CMakeFiles/Makefile2:3855: recipe for target 
'examples/CMakeFiles/step-74.debug.dir/all' failed
make[1]: *** [examples/CMakeFiles/step-74.debug.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs
[ 79%] Built target obj_matrix_free_release
Makefile:129: recipe for target 'all' failed
make: *** [all] Error 2

Any suggestions or solutions would be greatly appreciated .

-- 
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[deal.II] METIS Issue during Installation Process

[Edward Read]

Hello,

I am trying to install Deal.ii on my new cluster, from the build screen 
output it looks there is a problem in finding METIS (which is installed). I 
am not exactly sure what is going on? Is there a way to hard code the METIS 
Path during the make process? I have attached the screen out from the 
CMAKE. Any thoughts or suggestions would greatly be appreciated. 

Thanks!

-- 
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see 
https://groups.google.com/d/forum/dealii?hl=en
--- 
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To unsubscribe from this group and stop receiving emails from it, send an email 
to dealii+unsubscr...@googlegroups.com.
To view this discussion on the web visit 
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[ 76%] Built target obj_simplex_release
In file included from /home/tad/dealii/source/lac/sparsity_tools.cc:39:0:
/usr/local/include/metis.h:175:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon, idx_t 
*xadj,
^~~~
ETIMEDOUT
/usr/local/include/metis.h:180:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_PartGraphKway(idx_t *nvtxs, idx_t *ncon, idx_t *xadj,
^~~~
ETIMEDOUT
/usr/local/include/metis.h:185:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_MeshToDual(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t 
*eind,
^~~~
ETIMEDOUT
/usr/local/include/metis.h:188:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_MeshToNodal(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t 
*eind,
^~~~
ETIMEDOUT
/usr/local/include/metis.h:191:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_PartMeshNodal(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t 
*eind,
^~~~
ETIMEDOUT
/usr/local/include/metis.h:195:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_PartMeshDual(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t 
*eind,
^~~~
ETIMEDOUT
/usr/local/include/metis.h:200:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_NodeND(idx_t *nvtxs, idx_t *xadj, idx_t *adjncy, idx_t 
*vwgt,
^~~~
ETIMEDOUT
/usr/local/include/metis.h:203:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_Free(void *ptr);
^~~~
ETIMEDOUT
/usr/local/include/metis.h:205:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_SetDefaultOptions(idx_t *options);
^~~~
ETIMEDOUT
/usr/local/include/metis.h:210:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_NodeNDP(idx_t nvtxs, idx_t *xadj, idx_t *adjncy, idx_t 
*vwgt,
^~~~
ETIMEDOUT
/usr/local/include/metis.h:214:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_ComputeVertexSeparator(idx_t *nvtxs, idx_t *xadj, idx_t 
*adjncy,
^~~~
ETIMEDOUT
/usr/local/include/metis.h:217:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_NodeRefine(idx_t nvtxs, idx_t *xadj, idx_t *vwgt, idx_t 
*adjncy,
^~~~
ETIMEDOUT
/home/tad/dealii/source/lac/sparsity_tools.cc: In function ‘void 
dealii::SparsityTools::{anonymous}::partition_metis(const 
dealii::SparsityPattern&, const std::vector&, unsigned int, std::vector&)’:
/home/tad/dealii/source/lac/sparsity_tools.cc:93:7: error: 
‘METIS_SetDefaultOptions’ was not declared in this scope
METIS_SetDefaultOptions(options);
^~~
In file included from /home/tad/dealii/source/lac/sparsity_tools.cc:39:0:
/usr/local/include/metis.h:175:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon, idx_t 
*xadj,
^~~~
ETIMEDOUT
/usr/local/include/metis.h:180:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_PartGraphKway(idx_t *nvtxs, idx_t *ncon, idx_t *xadj,
^~~~
ETIMEDOUT
/usr/local/include/metis.h:185:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_MeshToDual(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t 
*eind,
^~~~
ETIMEDOUT
/usr/local/include/metis.h:188:1: error: ‘METIS_EXPORT’ does not name a type; 
did you mean ‘ETIMEDOUT’?
METIS_EXPORT int METIS_MeshToNodal(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t 
*eind,
^~~~
ETIMEDOUT
/home/tad/dealii/source/lac/sparsity_tools.cc:138:16: error: 
‘METIS_PartGraphRecursive’ was not declared in this scope
ierr = METIS_PartGraphRecursive(,
^~~~
/usr/local/include/metis.h:191:1: