[deal.II] Re: Deal.ii installation

2020-06-03 Thread Prasad Adhav
I was able to solve the issue by installing *trilinos-all-dev.*

~$ *sudo apt-get update -y*
~$ *sudo apt-get install -y trilinos-all-dev*

Download Deal.ii
Moved it to bin

~/bin$ *tar -xvf deal.II-9.1.1.tar.gz*
~/bin/dealii-9.1.1$ *mkdir build*
~/bin/dealii-9.1.1$ *cd build*
~/bin/dealii-9.1.1/build$ *cmake 
-DCMAKE_INSTALL_PREFIX=/home/prasad/bin/deal.II ..*
~/bin/dealii-9.1.1/build$ *make install*
~/bin/dealii-9.1.1/build$ *make test*

prasad@XDEM-laptop:~/bin/dealii-9.1.1/build$ make test 
Scanning dependencies of target test 
Running quicktests... 
Test project /home/prasad/bin/dealii-9.1.1/build/tests/quick_tests 
   Start 1: step.debug 
   Start 2: step.release 
   Start 3: affinity.debug 
   Start 4: tbb.debug 
   Start 5: lapack.debug 
   Start 6: umfpack.debug 
   Start 7: boost_zlib.debug 
   Start 8: gmsh.debug 
1/8 Test #5: lapack.debug .   Passed   34.73 sec 
2/8 Test #4: tbb.debug    Passed   38.34 sec 
3/8 Test #8: gmsh.debug ...   Passed   44.55 sec 
4/8 Test #7: boost_zlib.debug .   Passed   44.97 sec 
5/8 Test #3: affinity.debug ...   Passed   44.98 sec 
6/8 Test #6: umfpack.debug    Passed   48.18 sec 
7/8 Test #2: step.release .   Passed   52.11 sec 
8/8 Test #1: step.debug ...   Passed   54.85 sec 

100% tests passed, 0 tests failed out of 8 

Total Test time (real) =  54.85 sec 
Built target test


On Monday, April 27, 2020 at 11:27:31 AM UTC+2, Prasad Adhav wrote:
>
> Hello,
>
> I am trying to install deal.ii for the first time.
> I followed the instructions on the readme page(
> https://www.dealii.org/current/readme.html)
>
> I use the following for cmake and it worked fine:
>
> prasad@XDEM-laptop:~/Downloads/dealii-9.1.1/build$ cmake 
> -DCMAKE_INSTALL_PREFIX=/home/
> prasad/Downloads/dealii-9.1.1/dealii_install/ ..
>
> Then I tried to do `make`, `make info` and `make install`, I get a similar 
> error as follows:
> prasad@XDEM-laptop:~/Downloads/dealii-9.1.1/build$ make info 
> make: *** No rule to make target 'info'.  Stop.
>
> prasad@XDEM-laptop:~/Downloads/dealii-9.1.1/build$ make install 
> make: *** No rule to make target 'install'.  Stop.
>
> I apologize if this was already posted, in my search I did not find any 
> questions similar to this.
> Can anyone help with this?
> Thank you.
>
>
>
>

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Re: [deal.II] Re: Deal.ii installation

2020-06-03 Thread Prasad Adhav
Dear Daniel,

Thank you for your reply.

1. The thing is after I do the cmake step, and go on to do  make --jobs=4
install , I get the following output in the terminal.
make: *** No rule to make target 'install'.  Stop.
Am I running this command from a wrong directory?

2. For the dependencies, should I install them manually? and add them to
cmake command I pass?

Thank you for all the help.
Regards,
Prasad


On Wed, Jun 3, 2020 at 2:39 PM Daniel Arndt  wrote:

> Prasad,
>
> CMake ran successfully and the output looks fine. Some of the example
> steps require certain dependencies which you just didn't activate.
> Note, that you will not be able to use MPI with this configuration.
>
> Best,
> Daniel
>
>
> Am Mi., 3. Juni 2020 um 05:21 Uhr schrieb Prasad Adhav <
> prasada001...@gmail.com>:
>
>> I am sorry to be a bother, but the last time I tried the suggestion
>> without any success.
>> cmake -DDEALII_WITH_MPI=OFF -DDEALII_WITH_TRILINOS=OFF
>> -DDEAL_II_WITH_PETSC=OFF ..
>>
>> I had to shift to a different task.
>>
>> I have to come back to install deal.ii though. I thought of starting a
>> from new.
>> I want to run a coupled simulation using the preCICE library, where
>> deal.ii will be used for FEM part.( hence I am trying to install v9.1.0).
>>
>> I am using Ubuntu 18.04 LTS.
>> cmake version 3.10.2
>>
>> I first did
>> cmake -DCMAKE_INSTALL_PREFIX=/home/prasad/bin/deal.II ../
>>
>> then I did
>> cmake -DDEALII_WITH_MPI=OFF -DDEALII_WITH_TRILINOS=OFF 
>> -DDEAL_II_WITH_PETSC=OFF
>> ..
>>
>> The dealii_cmake.log has the output for my terminal.
>> CMakeError.log and CmakeOutput.log are also attached.
>>
>> The immediate issues seen are
>> -- Include
>> /home/prasad/bin/dealii-9.1.0/cmake/configure/configure_muparser.cmake
>> -- MUPARSER_LIBRARY not found! Call:
>> -- FIND_LIBRARY(MUPARSER_LIBRARY NAMES muparser muparserd HINTS
>> PATH_SUFFIXES lib lib64 lib)
>> -- MUPARSER_INCLUDE_DIR not found! Call:
>> -- FIND_PATH(MUPARSER_INCLUDE_DIR muParserDef.h HINTS PATH_SUFFIXES
>> include)
>> --   MUPARSER_LIBRARIES: *** Required variable "MUPARSER_LIBRARY" set to
>> NOTFOUND ***
>> --   MUPARSER_INCLUDE_DIRS: *** Required variable "MUPARSER_INCLUDE_DIR"
>> set to NOTFOUND ***
>> -- Could NOT find MUPARSER
>> -- DEAL_II_WITH_MUPARSER has unmet external dependencies.
>> -- DEAL_II_WITH_MUPARSER successfully set up with bundled packages.
>>
>>
>> The further output shows, with examples with dependencies not satisfied.
>> -- Configuring done. Proceed to target definitions now.
>> -- Setting up bundled features
>> -- Performing Test DEAL_II_HAVE_FLAG_flifetime_dse=1
>> -- Performing Test DEAL_II_HAVE_FLAG_flifetime_dse=1 - Success
>> -- Performing Test DEAL_II_HAVE_FLAG_Wimplicit_fallthrough=0
>> -- Performing Test DEAL_II_HAVE_FLAG_Wimplicit_fallthrough=0 - Success
>> -- Setting up bundled features - Done
>> -- Setting up library
>> -- Setting up library - Done
>> -- Setting up project configuration
>> -- Setting up project configuration - Done
>> -- Setting up examples
>> --   step-17 - dependencies not satisfied
>> --   step-18 - dependencies not satisfied
>> --   step-32 - dependencies not satisfied
>> --   step-36 - dependencies not satisfied
>> --   step-40 - dependencies not satisfied
>> --   step-42 - dependencies not satisfied
>> --   step-45 - dependencies not satisfied
>> --   step-54 - dependencies not satisfied
>> --   step-55 - dependencies not satisfied
>> --   step-62 - dependencies not satisfied
>> --   step-64 - dependencies not satisfied
>> -- Setting up examples - Done
>> -- Setting up quick_tests in DEBUG mode
>> -- Setting up quick_tests in DEBUG mode - Done
>> -- Setting up testsuite
>> -- Setting up testsuite - Done
>>
>> Thank you in advance for your help and patience.
>>
>> Regards,
>> Prasad ADHAV
>>
>> On Tue, Apr 28, 2020 at 7:09 PM Marc Fehling 
>> wrote:
>>
>>> Hi Prasad!
>>>
>>> My guess now is the following: You have PETSc and Trilinos installed on
>>> your device, which deal.II finds, but complains that PETSc has been
>>> installed with a different MPI configuration as is available for deal.II.
>>>
>>> -- Include
>>> /home/prasad/Downloads/dealii/cmake/configure/configure_3_petsc.cmake
>>> -- Found PETSC_LIBRARY
>>> -- Found PETSC_INCLUDE_DIR_ARCH
>>> -- Found PETSC_INCLUDE_DIR_COMMON
>>> -- PETSC_PETSCVARIABLES n

Re: [deal.II] Re: My machine did't manage to run Deal.II

2020-06-03 Thread Prasad Adhav
Thank you... its *libdeal.ii-8.5.1*

Is there a reason why the latest or different versions are not available?

On Wednesday, June 3, 2020 at 11:48:10 AM UTC+2, chipszd wrote:
>
> Hello,
>
> You can try
>
> apt search deal
>
> to check (no sudo).
>
> It's a library, so it will probably be prefixed with "lib". The library is 
> the development version, so it should end with "dev".
>
> Probably try searching for 
>
> libdeal.ii-dev 
>
> next.
>
> On Wed, Jun 3, 2020, 05:35 Prasad Adhav > 
> wrote:
>
>> Hello,
>>
>> I was searching through the issues to see if anybody else had issues 
>> compiling dealii.
>> I am using Ubuntu 18.04LTS.
>> Is it possible to install a specific version of dealii (v9.1.0)  with 
>> apt-get?
>>
>> Is this the correct library?
>> sudo apt-get install deal
>>
>> Thank you.
>>
>> Regards,
>> Prasad ADAHV
>>
>> On Tuesday, April 28, 2020 at 2:08:23 PM UTC+2, Wilmar Alves Cruvinel 
>> Lima wrote:
>>>
>>> HI,
>>>
>>> First of all I want to thanks professor Wolfgang Bangerth and Mathias 
>>> Maier. 
>>>
>>>   Your advices were very good to go ahead. 
>>>
>>> After instalation, I put the command:
>>>
>>> administrador@administrador-desktop:~/dealii-9.1.1$  *make --jobs=4 
>>> install*
>>>
>>> I attached the console outputs on archive *Make_Error* here. The 
>>> command gone ok until 37%. 
>>>
>>> one of the replies:   *virtual memory exhausted*
>>>
>>> and the last lines are:
>>>
>>> make[1]: *** [source/numerics/CMakeFiles/obj_numerics_debug.dir/all] 
>>> Error 2
>>> Makefile:149: recipe for target 'all' failed
>>> make: *** [all] Error 2
>>>
>>> *My PC has the basics data:*
>>>   CPU: Intel Dual Core Pentium G630; 
>>>   Clock speeds: 1 x 1596 Mhz  and  1 x 2138 MHz
>>>   Cache memory: 3072 KB;
>>>   RAM memory: 1,6 GB
>>>   Hard Drive: Almost Empty (85 GB)
>>>   
>>> It's possible to use this machine to run Deal.II? I would appreciate 
>>> your help!   Sincerily, Wilmar. (From Brazil, in time of Covirus!)
>>>
>> -- 
>> The deal.II project is located at http://www.dealii.org/
>> For mailing list/forum options, see 
>> https://groups.google.com/d/forum/dealii?hl=en
>> --- 
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>> "deal.II User Group" group.
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>> email to dea...@googlegroups.com .
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>> https://groups.google.com/d/msgid/dealii/1dca3b5a-6310-4192-afc7-451310c8189c%40googlegroups.com
>>  
>> <https://groups.google.com/d/msgid/dealii/1dca3b5a-6310-4192-afc7-451310c8189c%40googlegroups.com?utm_medium=email_source=footer>
>> .
>>
>

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[deal.II] Re: My machine did't manage to run Deal.II

2020-06-03 Thread Prasad Adhav
Hello,

I was searching through the issues to see if anybody else had issues 
compiling dealii.
I am using Ubuntu 18.04LTS.
Is it possible to install a specific version of dealii (v9.1.0)  with 
apt-get?

Is this the correct library?
sudo apt-get install deal

Thank you.

Regards,
Prasad ADAHV

On Tuesday, April 28, 2020 at 2:08:23 PM UTC+2, Wilmar Alves Cruvinel Lima 
wrote:
>
> HI,
>
> First of all I want to thanks professor Wolfgang Bangerth and Mathias 
> Maier. 
>
>   Your advices were very good to go ahead. 
>
> After instalation, I put the command:
>
> administrador@administrador-desktop:~/dealii-9.1.1$  *make --jobs=4 
> install*
>
> I attached the console outputs on archive *Make_Error* here. The command 
> gone ok until 37%. 
>
> one of the replies:   *virtual memory exhausted*
>
> and the last lines are:
>
> make[1]: *** [source/numerics/CMakeFiles/obj_numerics_debug.dir/all] Error 
> 2
> Makefile:149: recipe for target 'all' failed
> make: *** [all] Error 2
>
> *My PC has the basics data:*
>   CPU: Intel Dual Core Pentium G630; 
>   Clock speeds: 1 x 1596 Mhz  and  1 x 2138 MHz
>   Cache memory: 3072 KB;
>   RAM memory: 1,6 GB
>   Hard Drive: Almost Empty (85 GB)
>   
> It's possible to use this machine to run Deal.II? I would appreciate 
> your help!   Sincerily, Wilmar. (From Brazil, in time of Covirus!)
>

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Re: [deal.II] Re: Deal.ii installation

2020-04-28 Thread Prasad Adhav
Marc,

I hope this helps with figuring out the failing test.
Thank you very much for your help.

Regards,
Prasad

On Tue, Apr 28, 2020 at 4:04 PM Marc Fehling 
wrote:

> Prasad!
>
> If you look closely into your CMakeError.log file, you'll find that there
> are multiple tests failing. This is not a bad thing: deal.II figures out
> your system configuration this way and enables/disables certain features.
> However in your case, it seems that there is a mandatory test failing, and
> I can not figure out which one by these two log files alone. Could you
> provide your cmake console output?
>
> Could you redirect your console output into a file e.g. via `cmake .. >
> console.log` and forward it?
>
> Best,
> Marc
>
> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see
> https://groups.google.com/d/forum/dealii?hl=en
> ---
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> <https://groups.google.com/d/msgid/dealii/c17bb327-8528-424f-a33c-96685f217e4c%40googlegroups.com?utm_medium=email_source=footer>
> .
>


-- 
Regards,
Prasad ADHAV
+33 (0)7 66 54 16 32
prasada001...@gmail.com

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-- This is CMake 3.10.2
-- 
-- Include /home/prasad/Downloads/dealii/cmake/setup_external_macros.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_add_flags.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_check_compiler_setup.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_check_cxx_compiler_bug.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_check_mpi_interface.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_clear_cmake_required.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_configure_feature.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_add_definitions.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_add_library.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_add_test.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_find_file.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_find_library.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_find_path.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_find_program.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_initialize_cached_variables.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_insource_setup_target.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_invoke_autopilot.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_package_handle.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_pickup_tests.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_query_git_information.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_deal_ii_setup_target.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_decorate_with_stars.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_enable_if_links.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_enable_if_supported.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_enable_language_optional.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_evaluate_expression.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_expand_instantiations.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_filter_system_libraries.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_find_package.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_find_system_library.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_item_matches.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_purge_feature.cmake
-- Include /home/prasad/Downloads/dealii/cmake/macros/macro_register_feature.cmake
-- Inclu

Re: [deal.II] Re: Deal.ii installation

2020-04-28 Thread Prasad Adhav
Hello Marc,

Thank you for your reply.
I am using cmake version 3.10.2
My OS is Ubuntu 18.04 LTS.

Do you think the cmake version is an issue?
I will try the fix from the issue you suggested.

Regards,
Prasad

On Tue, Apr 28, 2020 at 10:47 AM Marc Fehling 
wrote:

> Hi Prasad!
>
> Thank you for providing the logs! It seems like this here is the cause of
> it:
>
> /usr/bin/ld: cannot find -lpthreads
>
>
> It seems like this is again related to the `-lpthread` problem. Just out
> of curiosity: Which version of cmake and which OS are you using? They may
> have updated CMake in their repository which could be the reason why we see
> this issue more frequently recently...
>
> This may have been fixed upstream in pull request #9117
> <https://github.com/dealii/dealii/pull/9117/>. This issue only occurs
> with CMake version >= 3.16. Just compile from the master branch and you
> should be good!
>
> Best,
> Marc
>
> On Monday, April 27, 2020 at 11:27:31 AM UTC+2, Prasad Adhav wrote:
>>
>> Hello,
>>
>> I am trying to install deal.ii for the first time.
>> I followed the instructions on the readme page(
>> https://www.dealii.org/current/readme.html)
>>
>> I use the following for cmake and it worked fine:
>>
>> prasad@XDEM-laptop:~/Downloads/dealii-9.1.1/build$ cmake
>> -DCMAKE_INSTALL_PREFIX=/home/
>> prasad/Downloads/dealii-9.1.1/dealii_install/ ..
>>
>> Then I tried to do `make`, `make info` and `make install`, I get a
>> similar error as follows:
>> prasad@XDEM-laptop:~/Downloads/dealii-9.1.1/build$ make info
>> make: *** No rule to make target 'info'.  Stop.
>>
>> prasad@XDEM-laptop:~/Downloads/dealii-9.1.1/build$ make install
>> make: *** No rule to make target 'install'.  Stop.
>>
>> I apologize if this was already posted, in my search I did not find any
>> questions similar to this.
>> Can anyone help with this?
>> Thank you.
>>
>>
>>
>> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see
> https://groups.google.com/d/forum/dealii?hl=en
> ---
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> .
>


-- 
Regards,
Prasad ADHAV
+33 (0)7 66 54 16 32
prasada001...@gmail.com

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Re: [deal.II] Re: Deal.ii installation

2020-04-28 Thread Prasad Adhav
Hello Wilmar,

I did install cmake for another library I am using.
The installation worked and I have tested out those installations.

On Mon, Apr 27, 2020 at 8:18 PM Wilmar Alves Cruvinel Lima <
wilmar84018...@gmail.com> wrote:

>
>
> Em segunda-feira, 27 de abril de 2020 06:27:31 UTC-3, Prasad Adhav
> escreveu:
>>
>> Hello,
>>
>> I am trying to install deal.ii for the first time.
>> I followed the instructions on the readme page(
>> https://www.dealii.org/current/readme.html)
>>
>> I use the following for cmake and it worked fine:
>>
>> prasad@XDEM-laptop:~/Downloads/dealii-9.1.1/build$ cmake
>> -DCMAKE_INSTALL_PREFIX=/home/
>> prasad/Downloads/dealii-9.1.1/dealii_install/ ..
>>
>> Then I tried to do `make`, `make info` and `make install`, I get a
>> similar error as follows:
>> prasad@XDEM-laptop:~/Downloads/dealii-9.1.1/build$ make info
>> make: *** No rule to make target 'info'.  Stop.
>>
>> prasad@XDEM-laptop:~/Downloads/dealii-9.1.1/build$ make install
>> make: *** No rule to make target 'install'.  Stop.
>>
>> I apologize if this was already posted, in my search I did not find any
>> questions similar to this.
>> Can anyone help with this?
>> Thank you.
>>
>> Hi, Prasad,
>>
>
> I am installing Dealii too. I apologise by not have the solution, but I
> want to ask you if you first installed Cmake and begin using it. You didn't
> do that?
>
> Thank you.
>
> Wilmar.
>
>
> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see
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-- 
Regards,
Prasad ADHAV
+33 (0)7 66 54 16 32
prasada001...@gmail.com

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