Hello,
I tried installing deal.ii today. Installation went fine without any errors
however when I did make test, it failed all 6 tests. What should I do? Any
help is highly appreciated. Thanks!
The error I get is as follows:
Running quicktests...
Test project /home/japan/dealii/build/tests/quick_tests
Start 1: step.debug
1/6 Test #1: step.debug .......................***Failed 6.59 sec
make[7]: *** [tests/quick_tests/CMakeFiles/step.debug.run] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/step.debug.run.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/step.debug.run.dir/rule] Error 2
make[4]: *** [step.debug.run] Error 2
Test step.debug: RUN
=============================== OUTPUT BEGIN
===============================
[ 0%] Built target kill-step.debug-OK
[ 0%] Built target obj_non_matching_inst
[ 2%] Built target obj_non_matching_debug
[ 11%] Built target obj_boost_serialization_debug
[ 11%] Built target obj_boost_system_debug
[ 13%] Built target obj_boost_iostreams_debug
[ 15%] Built target obj_muparser_debug
[ 15%] Built target expand_instantiations_exe
[ 20%] Built target obj_numerics_inst
[ 28%] Built target obj_numerics_debug
[ 37%] Built target obj_fe_inst
[ 48%] Built target obj_fe_debug
[ 51%] Built target obj_dofs_inst
[ 53%] Built target obj_dofs_debug
[ 57%] Built target obj_lac_inst
[ 66%] Built target obj_lac_debug
[ 68%] Built target obj_base_inst
[ 82%] Built target obj_base_debug
[ 86%] Built target obj_grid_inst
[ 88%] Built target obj_grid_debug
[ 88%] Built target obj_hp_inst
[ 91%] Built target obj_hp_debug
[ 93%] Built target obj_multigrid_inst
[ 95%] Built target obj_multigrid_debug
[ 97%] Built target obj_distributed_inst
[ 97%] Built target obj_distributed_debug
[ 97%] Built target obj_algorithms_inst
[ 97%] Built target obj_algorithms_debug
[ 97%] Built target obj_matrix_free_inst
[ 97%] Built target obj_matrix_free_debug
[ 97%] Built target obj_meshworker_inst
[ 97%] Built target obj_meshworker_debug
[ 97%] Built target obj_opencascade_inst
[100%] Built target obj_opencascade_debug
[100%] Built target obj_physics_inst
[100%] Built target obj_physics_debug
[100%] Built target obj_physics_elasticity_inst
[100%] Built target obj_physics_elasticity_debug
[100%] Built target deal_II.g
[100%] Built target step.debug
step.debug: RUN failed. Output:
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.9' not found (required by ./step.debug)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by ./step.debug)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.20' not found (required by ./step.debug)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.9' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.20' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.8' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by
/usr/lib/x86_64-linux-gnu/libtbb.so.2)
tests/quick_tests/CMakeFiles/step.debug.run.dir/build.make:57: recipe for
target 'tests/quick_tests/CMakeFiles/step.debug.run' failed
CMakeFiles/Makefile2:10014: recipe for target
'tests/quick_tests/CMakeFiles/step.debug.run.dir/all' failed
CMakeFiles/Makefile2:10021: recipe for target
'tests/quick_tests/CMakeFiles/step.debug.run.dir/rule' failed
Makefile:3425: recipe for target 'step.debug.run' failed
step.debug: ****** RUN failed *******
=============================== OUTPUT END
===============================
Expected stage PASSED - aborting
CMake Error at /home/japan/dealii/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
Start 2: step.release
2/6 Test #2: step.release .....................***Failed 4.57 sec
make[7]: *** [tests/quick_tests/CMakeFiles/step.release.run] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/step.release.run.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/step.release.run.dir/rule] Error
2
make[4]: *** [step.release.run] Error 2
Test step.release: RUN
=============================== OUTPUT BEGIN
===============================
[ 0%] Built target kill-step.release-OK
[ 0%] Built target obj_non_matching_inst
[ 0%] Built target obj_non_matching_release
[ 9%] Built target obj_boost_serialization_release
[ 9%] Built target obj_boost_system_release
[ 9%] Built target obj_boost_iostreams_release
[ 9%] Built target obj_muparser_release
[ 9%] Built target expand_instantiations_exe
[ 14%] Built target obj_numerics_inst
[ 23%] Built target obj_numerics_release
[ 33%] Built target obj_fe_inst
[ 45%] Built target obj_fe_release
[ 47%] Built target obj_dofs_inst
[ 50%] Built target obj_dofs_release
[ 54%] Built target obj_lac_inst
[ 61%] Built target obj_lac_release
[ 64%] Built target obj_base_inst
[ 76%] Built target obj_base_release
[ 80%] Built target obj_grid_inst
[ 83%] Built target obj_grid_release
[ 83%] Built target obj_hp_inst
[ 85%] Built target obj_hp_release
[ 88%] Built target obj_multigrid_inst
[ 90%] Built target obj_multigrid_release
[ 92%] Built target obj_distributed_inst
[ 95%] Built target obj_distributed_release
[ 95%] Built target obj_algorithms_inst
[ 95%] Built target obj_algorithms_release
[ 95%] Built target obj_matrix_free_inst
[ 97%] Built target obj_matrix_free_release
[ 97%] Built target obj_meshworker_inst
[ 97%] Built target obj_meshworker_release
[ 97%] Built target obj_opencascade_inst
[ 97%] Built target obj_opencascade_release
[ 97%] Built target obj_physics_inst
[ 97%] Built target obj_physics_release
[ 97%] Built target obj_physics_elasticity_inst
[100%] Built target obj_physics_elasticity_release
[100%] Built target deal_II
[100%] Built target step.release
step.release: RUN failed. Output:
./step.release: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.9' not found (required by ./step.release)
./step.release: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by ./step.release)
./step.release: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.20' not found (required by ./step.release)
./step.release: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.9' not found (required by
/home/japan/dealii/build/lib/libdeal_II.so.9.0.0-pre)
./step.release: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by
/home/japan/dealii/build/lib/libdeal_II.so.9.0.0-pre)
./step.release: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.20' not found (required by
/home/japan/dealii/build/lib/libdeal_II.so.9.0.0-pre)
./step.release: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.8' not found (required by
/home/japan/dealii/build/lib/libdeal_II.so.9.0.0-pre)
./step.release: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by
/usr/lib/x86_64-linux-gnu/libtbb.so.2)
tests/quick_tests/CMakeFiles/step.release.run.dir/build.make:57: recipe for
target 'tests/quick_tests/CMakeFiles/step.release.run' failed
CMakeFiles/Makefile2:9917: recipe for target
'tests/quick_tests/CMakeFiles/step.release.run.dir/all' failed
CMakeFiles/Makefile2:9924: recipe for target
'tests/quick_tests/CMakeFiles/step.release.run.dir/rule' failed
Makefile:3386: recipe for target 'step.release.run' failed
step.release: ****** RUN failed *******
=============================== OUTPUT END
===============================
Expected stage PASSED - aborting
CMake Error at /home/japan/dealii/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
Start 3: affinity.debug
3/6 Test #3: affinity.debug ...................***Failed 3.95 sec
make[7]: *** [tests/quick_tests/CMakeFiles/affinity.debug.run] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/affinity.debug.run.dir/all]
Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/affinity.debug.run.dir/rule]
Error 2
make[4]: *** [affinity.debug.run] Error 2
Test affinity.debug: RUN
=============================== OUTPUT BEGIN
===============================
[ 0%] Built target kill-affinity.debug-OK
[ 0%] Built target obj_non_matching_inst
[ 2%] Built target obj_non_matching_debug
[ 11%] Built target obj_boost_serialization_debug
[ 11%] Built target obj_boost_system_debug
[ 13%] Built target obj_boost_iostreams_debug
[ 15%] Built target obj_muparser_debug
[ 15%] Built target expand_instantiations_exe
[ 20%] Built target obj_numerics_inst
[ 28%] Built target obj_numerics_debug
[ 37%] Built target obj_fe_inst
[ 48%] Built target obj_fe_debug
[ 51%] Built target obj_dofs_inst
[ 53%] Built target obj_dofs_debug
[ 57%] Built target obj_lac_inst
[ 66%] Built target obj_lac_debug
[ 68%] Built target obj_base_inst
[ 82%] Built target obj_base_debug
[ 86%] Built target obj_grid_inst
[ 88%] Built target obj_grid_debug
[ 88%] Built target obj_hp_inst
[ 91%] Built target obj_hp_debug
[ 93%] Built target obj_multigrid_inst
[ 95%] Built target obj_multigrid_debug
[ 97%] Built target obj_distributed_inst
[ 97%] Built target obj_distributed_debug
[ 97%] Built target obj_algorithms_inst
[ 97%] Built target obj_algorithms_debug
[ 97%] Built target obj_matrix_free_inst
[ 97%] Built target obj_matrix_free_debug
[ 97%] Built target obj_meshworker_inst
[ 97%] Built target obj_meshworker_debug
[ 97%] Built target obj_opencascade_inst
[100%] Built target obj_opencascade_debug
[100%] Built target obj_physics_inst
[100%] Built target obj_physics_debug
[100%] Built target obj_physics_elasticity_inst
[100%] Built target obj_physics_elasticity_debug
[100%] Built target deal_II.g
[100%] Built target affinity.debug
affinity.debug: RUN failed. Output:
./affinity.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by ./affinity.debug)
./affinity.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.9' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./affinity.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./affinity.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.20' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./affinity.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.8' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./affinity.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by
/usr/lib/x86_64-linux-gnu/libtbb.so.2)
tests/quick_tests/CMakeFiles/affinity.debug.run.dir/build.make:57: recipe
for target 'tests/quick_tests/CMakeFiles/affinity.debug.run' failed
CMakeFiles/Makefile2:9949: recipe for target
'tests/quick_tests/CMakeFiles/affinity.debug.run.dir/all' failed
CMakeFiles/Makefile2:9956: recipe for target
'tests/quick_tests/CMakeFiles/affinity.debug.run.dir/rule' failed
Makefile:3399: recipe for target 'affinity.debug.run' failed
affinity.debug: ****** RUN failed *******
=============================== OUTPUT END
===============================
Expected stage PASSED - aborting
CMake Error at /home/japan/dealii/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
Start 4: tbb.debug
4/6 Test #4: tbb.debug ........................***Failed 3.78 sec
make[7]: *** [tests/quick_tests/CMakeFiles/tbb.debug.run] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/tbb.debug.run.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/tbb.debug.run.dir/rule] Error 2
make[4]: *** [tbb.debug.run] Error 2
Test tbb.debug: RUN
=============================== OUTPUT BEGIN
===============================
[ 0%] Built target kill-tbb.debug-OK
[ 0%] Built target obj_non_matching_inst
[ 2%] Built target obj_non_matching_debug
[ 11%] Built target obj_boost_serialization_debug
[ 11%] Built target obj_boost_system_debug
[ 13%] Built target obj_boost_iostreams_debug
[ 15%] Built target obj_muparser_debug
[ 15%] Built target expand_instantiations_exe
[ 20%] Built target obj_numerics_inst
[ 28%] Built target obj_numerics_debug
[ 37%] Built target obj_fe_inst
[ 48%] Built target obj_fe_debug
[ 51%] Built target obj_dofs_inst
[ 53%] Built target obj_dofs_debug
[ 57%] Built target obj_lac_inst
[ 66%] Built target obj_lac_debug
[ 68%] Built target obj_base_inst
[ 82%] Built target obj_base_debug
[ 86%] Built target obj_grid_inst
[ 88%] Built target obj_grid_debug
[ 88%] Built target obj_hp_inst
[ 91%] Built target obj_hp_debug
[ 93%] Built target obj_multigrid_inst
[ 95%] Built target obj_multigrid_debug
[ 97%] Built target obj_distributed_inst
[ 97%] Built target obj_distributed_debug
[ 97%] Built target obj_algorithms_inst
[ 97%] Built target obj_algorithms_debug
[ 97%] Built target obj_matrix_free_inst
[ 97%] Built target obj_matrix_free_debug
[ 97%] Built target obj_meshworker_inst
[ 97%] Built target obj_meshworker_debug
[ 97%] Built target obj_opencascade_inst
[100%] Built target obj_opencascade_debug
[100%] Built target obj_physics_inst
[100%] Built target obj_physics_debug
[100%] Built target obj_physics_elasticity_inst
[100%] Built target obj_physics_elasticity_debug
[100%] Built target deal_II.g
[100%] Built target tbb.debug
tbb.debug: RUN failed. Output:
./tbb.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.9' not found (required by ./tbb.debug)
./tbb.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by ./tbb.debug)
./tbb.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.9' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./tbb.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./tbb.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.20' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./tbb.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.8' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./tbb.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by
/usr/lib/x86_64-linux-gnu/libtbb.so.2)
tests/quick_tests/CMakeFiles/tbb.debug.run.dir/build.make:57: recipe for
target 'tests/quick_tests/CMakeFiles/tbb.debug.run' failed
CMakeFiles/Makefile2:9788: recipe for target
'tests/quick_tests/CMakeFiles/tbb.debug.run.dir/all' failed
CMakeFiles/Makefile2:9795: recipe for target
'tests/quick_tests/CMakeFiles/tbb.debug.run.dir/rule' failed
Makefile:3334: recipe for target 'tbb.debug.run' failed
tbb.debug: ****** RUN failed *******
=============================== OUTPUT END
===============================
Expected stage PASSED - aborting
CMake Error at /home/japan/dealii/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
Start 5: lapack.debug
5/6 Test #5: lapack.debug .....................***Failed 9.65 sec
/home/japan/dealii/tests/quick_tests/lapack.cc: In function ‘int main()’:
/home/japan/dealii/tests/quick_tests/lapack.cc:100:25: error: variable
‘std::ofstream logfile’ has initializer but incomplete type
std::ofstream logfile(logname.c_str());
^
make[7]: *** [tests/quick_tests/CMakeFiles/lapack.debug.dir/lapack.cc.o]
Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/lapack.debug.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/lapack.debug.run.dir/rule] Error
2
make[4]: *** [lapack.debug.run] Error 2
Test lapack.debug: BUILD
=============================== OUTPUT BEGIN
===============================
lapack.debug: BUILD failed. Output:
[ 0%] Built target kill-lapack.debug-OK
[ 0%] Built target obj_non_matching_inst
[ 2%] Built target obj_non_matching_debug
[ 10%] Built target obj_boost_serialization_debug
[ 10%] Built target obj_boost_system_debug
[ 13%] Built target obj_boost_iostreams_debug
[ 15%] Built target obj_muparser_debug
[ 15%] Built target expand_instantiations_exe
[ 19%] Built target obj_numerics_inst
[ 28%] Built target obj_numerics_debug
[ 36%] Built target obj_fe_inst
[ 47%] Built target obj_fe_debug
[ 50%] Built target obj_dofs_inst
[ 52%] Built target obj_dofs_debug
[ 56%] Built target obj_lac_inst
[ 65%] Built target obj_lac_debug
[ 67%] Built target obj_base_inst
[ 80%] Built target obj_base_debug
[ 84%] Built target obj_grid_inst
[ 86%] Built target obj_grid_debug
[ 86%] Built target obj_hp_inst
[ 89%] Built target obj_hp_debug
[ 91%] Built target obj_multigrid_inst
[ 93%] Built target obj_multigrid_debug
[ 95%] Built target obj_distributed_inst
[ 95%] Built target obj_distributed_debug
[ 95%] Built target obj_algorithms_inst
[ 95%] Built target obj_algorithms_debug
[ 95%] Built target obj_matrix_free_inst
[ 95%] Built target obj_matrix_free_debug
[ 95%] Built target obj_meshworker_inst
[ 95%] Built target obj_meshworker_debug
[ 95%] Built target obj_opencascade_inst
[ 97%] Built target obj_opencascade_debug
[ 97%] Built target obj_physics_inst
[ 97%] Built target obj_physics_debug
[ 97%] Built target obj_physics_elasticity_inst
[ 97%] Built target obj_physics_elasticity_debug
[ 97%] Built target deal_II.g
[100%] Building CXX object
tests/quick_tests/CMakeFiles/lapack.debug.dir/lapack.cc.o
tests/quick_tests/CMakeFiles/lapack.debug.dir/build.make:62: recipe for
target 'tests/quick_tests/CMakeFiles/lapack.debug.dir/lapack.cc.o' failed
CMakeFiles/Makefile2:10047: recipe for target
'tests/quick_tests/CMakeFiles/lapack.debug.dir/all' failed
CMakeFiles/Makefile2:9827: recipe for target
'tests/quick_tests/CMakeFiles/lapack.debug.run.dir/rule' failed
Makefile:3347: recipe for target 'lapack.debug.run' failed
lapack.debug: ****** BUILD failed *******
=============================== OUTPUT END
===============================
Expected stage PASSED - aborting
CMake Error at /home/japan/dealii/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
Start 6: umfpack.debug
6/6 Test #6: umfpack.debug ....................***Failed 3.83 sec
make[7]: *** [tests/quick_tests/CMakeFiles/umfpack.debug.run] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/umfpack.debug.run.dir/all] Error
2
make[5]: *** [tests/quick_tests/CMakeFiles/umfpack.debug.run.dir/rule]
Error 2
make[4]: *** [umfpack.debug.run] Error 2
Test umfpack.debug: RUN
=============================== OUTPUT BEGIN
===============================
[ 0%] Built target kill-umfpack.debug-OK
[ 0%] Built target obj_non_matching_inst
[ 2%] Built target obj_non_matching_debug
[ 10%] Built target obj_boost_serialization_debug
[ 10%] Built target obj_boost_system_debug
[ 13%] Built target obj_boost_iostreams_debug
[ 15%] Built target obj_muparser_debug
[ 15%] Built target expand_instantiations_exe
[ 19%] Built target obj_numerics_inst
[ 28%] Built target obj_numerics_debug
[ 36%] Built target obj_fe_inst
[ 47%] Built target obj_fe_debug
[ 50%] Built target obj_dofs_inst
[ 52%] Built target obj_dofs_debug
[ 56%] Built target obj_lac_inst
[ 65%] Built target obj_lac_debug
[ 67%] Built target obj_base_inst
[ 80%] Built target obj_base_debug
[ 84%] Built target obj_grid_inst
[ 86%] Built target obj_grid_debug
[ 86%] Built target obj_hp_inst
[ 89%] Built target obj_hp_debug
[ 91%] Built target obj_multigrid_inst
[ 93%] Built target obj_multigrid_debug
[ 95%] Built target obj_distributed_inst
[ 95%] Built target obj_distributed_debug
[ 95%] Built target obj_algorithms_inst
[ 95%] Built target obj_algorithms_debug
[ 95%] Built target obj_matrix_free_inst
[ 95%] Built target obj_matrix_free_debug
[ 95%] Built target obj_meshworker_inst
[ 95%] Built target obj_meshworker_debug
[ 95%] Built target obj_opencascade_inst
[ 97%] Built target obj_opencascade_debug
[ 97%] Built target obj_physics_inst
[ 97%] Built target obj_physics_debug
[ 97%] Built target obj_physics_elasticity_inst
[ 97%] Built target obj_physics_elasticity_debug
[ 97%] Built target deal_II.g
[100%] Built target umfpack.debug
umfpack.debug: RUN failed. Output:
./umfpack.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.9' not found (required by ./umfpack.debug)
./umfpack.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by ./umfpack.debug)
./umfpack.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.9' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./umfpack.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./umfpack.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.20' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./umfpack.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`CXXABI_1.3.8' not found (required by
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./umfpack.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by
/usr/lib/x86_64-linux-gnu/libtbb.so.2)
tests/quick_tests/CMakeFiles/umfpack.debug.run.dir/build.make:57: recipe
for target 'tests/quick_tests/CMakeFiles/umfpack.debug.run' failed
CMakeFiles/Makefile2:10144: recipe for target
'tests/quick_tests/CMakeFiles/umfpack.debug.run.dir/all' failed
CMakeFiles/Makefile2:10151: recipe for target
'tests/quick_tests/CMakeFiles/umfpack.debug.run.dir/rule' failed
Makefile:3477: recipe for target 'umfpack.debug.run' failed
umfpack.debug: ****** RUN failed *******
=============================== OUTPUT END
===============================
Expected stage PASSED - aborting
CMake Error at /home/japan/dealii/cmake/scripts/run_test.cmake:140
(MESSAGE):
*** abort
0% tests passed, 6 tests failed out of 6
Total Test time (real) = 32.38 sec
The following tests FAILED:
1 - step.debug (Failed)
2 - step.release (Failed)
3 - affinity.debug (Failed)
4 - tbb.debug (Failed)
5 - lapack.debug (Failed)
6 - umfpack.debug (Failed)
Errors while running CTest
***************************************************************************
** Error: Some of the quick tests failed. **
***************************************************************************
Please scroll up or check the file tests/quick_tests/quicktests.log for the
error messages. If you are unable to fix the problems, see the FAQ or write
to the mailing list linked at http://www.dealii.org
The affinity test can fail when you are linking in a library like BLAS
which uses OpenMP. Even without calling any BLAS functions, OpenMP messes
with the thread affinity which causes TBB to run single-threaded only. You
can fix this by exporting OMP_NUM_THREADS=1. Also see GOMP_CPU_AFFINITY
and OMP_PROC_BIND.
CMake Error at /home/japan/dealii/tests/quick_tests/run.cmake:68 (MESSAGE):
tests/quick_tests/CMakeFiles/test.dir/build.make:57: recipe for target
'tests/quick_tests/CMakeFiles/test' failed
make[3]: *** [tests/quick_tests/CMakeFiles/test] Error 1
CMakeFiles/Makefile2:10273: recipe for target
'tests/quick_tests/CMakeFiles/test.dir/all' failed
make[2]: *** [tests/quick_tests/CMakeFiles/test.dir/all] Error 2
CMakeFiles/Makefile2:10280: recipe for target
'tests/quick_tests/CMakeFiles/test.dir/rule' failed
make[1]: *** [tests/quick_tests/CMakeFiles/test.dir/rule] Error 2
Makefile:3529: recipe for target 'test' failed
make: *** [test] Error 2
--
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