Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2020-07-30 Thread Wolfgang Bangerth

On 7/30/20 3:59 AM, kaleem iqbal wrote:
I want to simulate FSI with elastic walls in bifurcation carotid arteries in 
2D. is it possible to use that geometry?


It is possible to use this geometry, but you need to generate a mesh for it. 
(See step-49 for mesh generation.)


Best
 W.


--

Wolfgang Bangerth  email: bange...@colostate.edu
   www: http://www.math.colostate.edu/~bangerth/

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2020-07-30 Thread kaleem iqbal
I want to simulate FSI with elastic walls in bifurcation carotid arteries
in 2D. is it possible to use that geometry?


On Thu, Jul 30, 2020 at 2:54 PM kaleem iqbal  wrote:

> thanks for the reply. simulation run
>
>
> On Thu, Jul 30, 2020 at 2:18 PM Luca Heltai  wrote:
>
>> Take a look at your parameter file. It is probably trying to write output
>> file to a directory that does not exist.
>>
>> Luca
>>
>> Il giorno 30 lug 2020, alle ore 10:58, kaleem iqbal <
>> kaleemiqb...@gmail.com> ha scritto:
>>
>> 
>> Dear Prof. Wolfgang;
>> During running step-70. I found the following error
>> Exception on processing:
>>
>> 
>> An error occurred in line <1360> of file
>> 
>> in function
>> void dealii::ParameterHandler::print_parameters(const string&,
>> dealii::ParameterHandler::OutputStyle) const
>> The violated condition was:
>> out
>> Additional information:
>> An input/output error has occurred. There are a number of reasons why
>> this may be happening, both for reading and writing operations.
>>
>> If this happens during an operation that tries to read data: First, you
>> may be trying to read from a file that doesn't exist or that is not
>> readable given its file permissions. Second, deal.II uses this error at
>> times if it tries to read information from a file but where the information
>> in the file does not correspond to the expected format. An example would be
>> a truncated file, or a mesh file that contains not only sections that
>> describe the vertices and cells, but also sections for additional data that
>> deal.II does not understand.
>>
>> If this happens during an operation that tries to write data: you may be
>> trying to write to a file to which file or directory permissions do not
>> allow you to write. A typical example is where you specify an output file
>> in a directory that does not exist.
>> 
>>
>> Aborting!
>> 
>> CMakeFiles/run.dir/build.make:57: recipe for target 'CMakeFiles/run'
>> failed
>> make[3]: *** [CMakeFiles/run] Error 1
>> CMakeFiles/Makefile2:131: recipe for target 'CMakeFiles/run.dir/all'
>> failed
>> make[2]: *** [CMakeFiles/run.dir/all] Error 2
>> CMakeFiles/Makefile2:138: recipe for target 'CMakeFiles/run.dir/rule'
>> failed
>> make[1]: *** [CMakeFiles/run.dir/rule] Error 2
>> Makefile:144: recipe for target 'run' failed
>> make: *** [run] Error 2
>> Please guide me
>> Regards
>> Kaleem iqbal
>>
>> --
>> The deal.II project is located at http://www.dealii.org/
>> For mailing list/forum options, see
>> https://groups.google.com/d/forum/dealii?hl=en
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>> 
>> .
>>
>> --
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>> 
>> .
>>
>

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2020-07-30 Thread kaleem iqbal
thanks for the reply. simulation run


On Thu, Jul 30, 2020 at 2:18 PM Luca Heltai  wrote:

> Take a look at your parameter file. It is probably trying to write output
> file to a directory that does not exist.
>
> Luca
>
> Il giorno 30 lug 2020, alle ore 10:58, kaleem iqbal <
> kaleemiqb...@gmail.com> ha scritto:
>
> 
> Dear Prof. Wolfgang;
> During running step-70. I found the following error
> Exception on processing:
>
> 
> An error occurred in line <1360> of file
> 
> in function
> void dealii::ParameterHandler::print_parameters(const string&,
> dealii::ParameterHandler::OutputStyle) const
> The violated condition was:
> out
> Additional information:
> An input/output error has occurred. There are a number of reasons why
> this may be happening, both for reading and writing operations.
>
> If this happens during an operation that tries to read data: First, you
> may be trying to read from a file that doesn't exist or that is not
> readable given its file permissions. Second, deal.II uses this error at
> times if it tries to read information from a file but where the information
> in the file does not correspond to the expected format. An example would be
> a truncated file, or a mesh file that contains not only sections that
> describe the vertices and cells, but also sections for additional data that
> deal.II does not understand.
>
> If this happens during an operation that tries to write data: you may be
> trying to write to a file to which file or directory permissions do not
> allow you to write. A typical example is where you specify an output file
> in a directory that does not exist.
> 
>
> Aborting!
> 
> CMakeFiles/run.dir/build.make:57: recipe for target 'CMakeFiles/run' failed
> make[3]: *** [CMakeFiles/run] Error 1
> CMakeFiles/Makefile2:131: recipe for target 'CMakeFiles/run.dir/all' failed
> make[2]: *** [CMakeFiles/run.dir/all] Error 2
> CMakeFiles/Makefile2:138: recipe for target 'CMakeFiles/run.dir/rule'
> failed
> make[1]: *** [CMakeFiles/run.dir/rule] Error 2
> Makefile:144: recipe for target 'run' failed
> make: *** [run] Error 2
> Please guide me
> Regards
> Kaleem iqbal
>
> --
> The deal.II project is located at http://www.dealii.org/
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> 
> .
>
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> 
> .
>

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2020-07-30 Thread kaleem iqbal
Thanks heena. Simulation run now.

Regards
K Iqbal

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2020-07-30 Thread Luca Heltai
Take a look at your parameter file. It is probably trying to write output file 
to a directory that does not exist. 

Luca

> Il giorno 30 lug 2020, alle ore 10:58, kaleem iqbal  
> ha scritto:
> 
> 
> Dear Prof. Wolfgang; 
> During running step-70. I found the following error  
> Exception on processing: 
> 
> 
> An error occurred in line <1360> of file 
> 
>  in function
> void dealii::ParameterHandler::print_parameters(const string&, 
> dealii::ParameterHandler::OutputStyle) const
> The violated condition was: 
> out
> Additional information: 
> An input/output error has occurred. There are a number of reasons why 
> this may be happening, both for reading and writing operations.
> 
> If this happens during an operation that tries to read data: First, you may 
> be trying to read from a file that doesn't exist or that is not readable 
> given its file permissions. Second, deal.II uses this error at times if it 
> tries to read information from a file but where the information in the file 
> does not correspond to the expected format. An example would be a truncated 
> file, or a mesh file that contains not only sections that describe the 
> vertices and cells, but also sections for additional data that deal.II does 
> not understand.
> 
> If this happens during an operation that tries to write data: you may be 
> trying to write to a file to which file or directory permissions do not allow 
> you to write. A typical example is where you specify an output file in a 
> directory that does not exist.
> 
> 
> Aborting!
> 
> CMakeFiles/run.dir/build.make:57: recipe for target 'CMakeFiles/run' failed
> make[3]: *** [CMakeFiles/run] Error 1
> CMakeFiles/Makefile2:131: recipe for target 'CMakeFiles/run.dir/all' failed
> make[2]: *** [CMakeFiles/run.dir/all] Error 2
> CMakeFiles/Makefile2:138: recipe for target 'CMakeFiles/run.dir/rule' failed
> make[1]: *** [CMakeFiles/run.dir/rule] Error 2
> Makefile:144: recipe for target 'run' failed
> make: *** [run] Error 2
> Please guide me
> Regards
> Kaleem iqbal
> -- 
> The deal.II project is located at http://www.dealii.org/
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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2020-07-30 Thread heena patel
Hi Iqbal,
   Check this link below.
https://groups.google.com/forum/?utm_medium=email_source=footer#!searchin/dealii/step$2070$209.2$20version%7Csort:date/dealii/Y5Lgt9Gn0Zs/vNHTNDdaAwAJ


Regards,
Heena

On Thu, Jul 30, 2020 at 10:58 AM kaleem iqbal 
wrote:

> Dear Prof. Wolfgang;
> During running step-70. I found the following error
> Exception on processing:
>
> 
> An error occurred in line <1360> of file
> 
> in function
> void dealii::ParameterHandler::print_parameters(const string&,
> dealii::ParameterHandler::OutputStyle) const
> The violated condition was:
> out
> Additional information:
> An input/output error has occurred. There are a number of reasons why
> this may be happening, both for reading and writing operations.
>
> If this happens during an operation that tries to read data: First, you
> may be trying to read from a file that doesn't exist or that is not
> readable given its file permissions. Second, deal.II uses this error at
> times if it tries to read information from a file but where the information
> in the file does not correspond to the expected format. An example would be
> a truncated file, or a mesh file that contains not only sections that
> describe the vertices and cells, but also sections for additional data that
> deal.II does not understand.
>
> If this happens during an operation that tries to write data: you may be
> trying to write to a file to which file or directory permissions do not
> allow you to write. A typical example is where you specify an output file
> in a directory that does not exist.
> 
>
> Aborting!
> 
> CMakeFiles/run.dir/build.make:57: recipe for target 'CMakeFiles/run' failed
> make[3]: *** [CMakeFiles/run] Error 1
> CMakeFiles/Makefile2:131: recipe for target 'CMakeFiles/run.dir/all' failed
> make[2]: *** [CMakeFiles/run.dir/all] Error 2
> CMakeFiles/Makefile2:138: recipe for target 'CMakeFiles/run.dir/rule'
> failed
> make[1]: *** [CMakeFiles/run.dir/rule] Error 2
> Makefile:144: recipe for target 'run' failed
> make: *** [run] Error 2
> Please guide me
> Regards
> Kaleem iqbal
>
> --
> The deal.II project is located at http://www.dealii.org/
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> 
> .
>

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2020-07-30 Thread kaleem iqbal
Dear Prof. Wolfgang; 
During running step-70. I found the following error  
Exception on processing: 


An error occurred in line <1360> of file 

 
in function
void dealii::ParameterHandler::print_parameters(const string&, 
dealii::ParameterHandler::OutputStyle) const
The violated condition was: 
out
Additional information: 
An input/output error has occurred. There are a number of reasons why 
this may be happening, both for reading and writing operations.

If this happens during an operation that tries to read data: First, you may 
be trying to read from a file that doesn't exist or that is not readable 
given its file permissions. Second, deal.II uses this error at times if it 
tries to read information from a file but where the information in the file 
does not correspond to the expected format. An example would be a truncated 
file, or a mesh file that contains not only sections that describe the 
vertices and cells, but also sections for additional data that deal.II does 
not understand.

If this happens during an operation that tries to write data: you may be 
trying to write to a file to which file or directory permissions do not 
allow you to write. A typical example is where you specify an output file 
in a directory that does not exist.


Aborting!

CMakeFiles/run.dir/build.make:57: recipe for target 'CMakeFiles/run' failed
make[3]: *** [CMakeFiles/run] Error 1
CMakeFiles/Makefile2:131: recipe for target 'CMakeFiles/run.dir/all' failed
make[2]: *** [CMakeFiles/run.dir/all] Error 2
CMakeFiles/Makefile2:138: recipe for target 'CMakeFiles/run.dir/rule' failed
make[1]: *** [CMakeFiles/run.dir/rule] Error 2
Makefile:144: recipe for target 'run' failed
make: *** [run] Error 2
Please guide me
Regards
Kaleem iqbal

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2017-08-14 Thread Denis Davydov
Hi Japan,

I am happy to hear that it worked and you resolved your problem!

Sincerely,
Denis.

> On 14 Aug 2017, at 04:13, Japan Patel  wrote:
> 
> Hey everyone,
> 
> Thanks Dr. Bangerth and thanks Denis!!
> 
> I was able to run step-1. I installed using spack. It took a while to 
> download all the packages and install them but it was worth it as I was able 
> to run an example problem which I wasn't able to before and all the packages 
> are already linked which would have been a huge hassle had I installed them 
> separately and then tried to link with dealii. Thank you so much for shipping 
> dealii in this format. I really appreciate it! 
> 
> I think I can follow Dr. Bangerth's online lectures now and learn how to use 
> dealii. 
> 
> Sincerely,
> Japan
> 
> On Sun, Aug 13, 2017 at 11:29 AM,  > wrote:
> Thanks. I was able to find the other thread regarding my problem and was able 
> to use the correct cmake flags to get dealii to install correctly. Thank you 
> for your help!
> 
> On Saturday, August 12, 2017 at 5:50:13 PM UTC-6, Wolfgang Bangerth wrote:
> On 08/12/2017 05:21 PM, drgeoff...@gmail.com <> wrote: 
> > I'm wondering if I could tag onto this message. I'm having a similar 
> > problem. 
> > Installed with no problems. However, when I run the tests, they all fail 
> > with 
> > the error: 
> > 
> > symbol lookup error: /usr/lib/libumfpack.so.3.1.0: undefined symbol: 
> > amd_realloc 
> 
> That seems like a separate issue unless you also get the error messages about 
> the CXXABI or GLIBCXX version mismatch. 
> 
> I think there was a question about your error on the mailing list a while 
> ago. 
> Can you try to search for it? 
> 
> Best 
>   W. 
> 
> -- 
>  
> Wolfgang Bangerth  email: bang...@colostate.edu <> 
> www: http://www.math.colostate.edu/~bangerth/ 
>  
> 
> 
> 
> -- 
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> 
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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2017-08-13 Thread drgeoffschrank
Thanks. I was able to find the other thread regarding my problem and was 
able to use the correct cmake flags to get dealii to install correctly. 
Thank you for your help!

On Saturday, August 12, 2017 at 5:50:13 PM UTC-6, Wolfgang Bangerth wrote:
>
> On 08/12/2017 05:21 PM, drgeoff...@gmail.com  wrote: 
> > I'm wondering if I could tag onto this message. I'm having a similar 
> problem. 
> > Installed with no problems. However, when I run the tests, they all fail 
> with 
> > the error: 
> > 
> > symbol lookup error: /usr/lib/libumfpack.so.3.1.0: undefined symbol: 
> amd_realloc 
>
> That seems like a separate issue unless you also get the error messages 
> about 
> the CXXABI or GLIBCXX version mismatch. 
>
> I think there was a question about your error on the mailing list a while 
> ago. 
> Can you try to search for it? 
>
> Best 
>   W. 
>
> -- 
>  
> Wolfgang Bangerth  email: bang...@colostate.edu 
>  
> www: http://www.math.colostate.edu/~bangerth/ 
>
>

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2017-08-13 Thread Wolfgang Bangerth

On 08/12/2017 07:22 PM, Japan Patel wrote:


Thank you for your reply. You are right. When I checked for compilers I have 
two versions of each compilers. I don't know why that isI do have petsc 
installed and I think that might have used different compilers. Is there a way 
to tell dealii to choose compilers?




You can also set the CXX environment variable to select a particular compiler 
before running cmake. You may have to start from a new, empty, build directory 
for this to work.


Best
 W.

--

Wolfgang Bangerth  email: bange...@colostate.edu
   www: http://www.math.colostate.edu/~bangerth/

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2017-08-13 Thread Denis Davydov
Hi,

Usually, one compiles some MPI provider (i.e. Openmpi) and then use its 
compiler wrappers in majority of dealii' dependencies.

Alternativelt ou can give Spack 
https://github.com/dealii/dealii/wiki/deal.II-in-Spack a try which guarantees 
that the whole toolchain is consistent: a single version of a library is used 
in dependents and (by default) the same compiler is used to build everything.

Regards,
Denis

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2017-08-12 Thread Japan Patel
Hi Dr. Bangerth,

Thank you for your reply. You are right. When I checked for compilers I
have two versions of each compilers. I don't know why that isI do have
petsc installed and I think that might have used different compilers. Is
there a way to tell dealii to choose compilers?

I have the following:

$ dpkg --list | grep compiler
ii  g++ 4:5.3.1-1ubuntu1
amd64GNU C++ compiler
ii  g++-5   5.4.0-6ubuntu1~16.04.4
amd64GNU C++ compiler
ii  gcc 4:5.3.1-1ubuntu1
amd64GNU C compiler
ii  gcc-5   5.4.0-6ubuntu1~16.04.4
amd64GNU C compiler
ii  gfortran4:5.3.1-1ubuntu1
amd64GNU Fortran 95 compiler
ii  gfortran-5  5.4.0-6ubuntu1~16.04.4
amd64GNU Fortran compiler
ii  hardening-includes  2.7ubuntu2
all  Makefile for enabling compiler flags for
security hardening
ii  libllvm3.6v5:amd64  1:3.6.2-3ubuntu2
amd64Modular compiler and toolchain technologies,
runtime library
ii  libllvm3.8:amd641:3.8-2ubuntu4
amd64Modular compiler and toolchain technologies,
runtime library
ii  libllvm3.8:i386 1:3.8-2ubuntu4
i386 Modular compiler and toolchain technologies,
runtime library
ii  libprotoc9v5:amd64  2.6.1-1.3
   amd64protocol buffers compiler library
ii  libxkbcommon0:amd64 0.5.0-1ubuntu2
amd64library interface to the XKB compiler - shared
library
ii  protobuf-compiler   2.6.1-1.3
   amd64compiler for protocol buffer definition files

Please advise on what to do next. I really appreciate your help!

Thanks!


On Sat, Aug 12, 2017 at 4:50 PM, Wolfgang Bangerth 
wrote:

> On 08/12/2017 05:21 PM, drgeoffschr...@gmail.com wrote:
>
>> I'm wondering if I could tag onto this message. I'm having a similar
>> problem. Installed with no problems. However, when I run the tests, they
>> all fail with the error:
>>
>> symbol lookup error: /usr/lib/libumfpack.so.3.1.0: undefined symbol:
>> amd_realloc
>>
>
> That seems like a separate issue unless you also get the error messages
> about the CXXABI or GLIBCXX version mismatch.
>
> I think there was a question about your error on the mailing list a while
> ago. Can you try to search for it?
>
> Best
>  W.
>
> --
> 
> Wolfgang Bangerth  email: bange...@colostate.edu
>www: http://www.math.colostate.edu/~bangerth/
>
>

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2017-08-12 Thread Wolfgang Bangerth

On 08/12/2017 05:21 PM, drgeoffschr...@gmail.com wrote:
I'm wondering if I could tag onto this message. I'm having a similar problem. 
Installed with no problems. However, when I run the tests, they all fail with 
the error:


symbol lookup error: /usr/lib/libumfpack.so.3.1.0: undefined symbol: amd_realloc


That seems like a separate issue unless you also get the error messages about 
the CXXABI or GLIBCXX version mismatch.


I think there was a question about your error on the mailing list a while ago. 
Can you try to search for it?


Best
 W.

--

Wolfgang Bangerth  email: bange...@colostate.edu
   www: http://www.math.colostate.edu/~bangerth/

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2017-08-12 Thread drgeoffschrank
I'm wondering if I could tag onto this message. I'm having a similar 
problem. Installed with no problems. However, when I run the tests, they 
all fail with the error:

symbol lookup error: /usr/lib/libumfpack.so.3.1.0: undefined symbol: 
amd_realloc

To Wolfgang's question... I have both gcc and g++ installed. I'm not sure 
if that could cause a conflict. The libraries, in particular the one in 
question, were installed using apt-get, so I didn't do any compiling on the 
machine. By the way, my platform is Ubuntu 14.04, if that is important. 

Thanks,

Geoff

On Saturday, August 12, 2017 at 10:57:58 AM UTC-6, Wolfgang Bangerth wrote:
>
> On 08/11/2017 06:42 PM, jap...@gmail.com  wrote: 
> > step.debug: RUN failed. Output: 
> > ./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version 
> `CXXABI_1.3.9' 
> > not found (required by ./step.debug) 
> > ./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version 
> > `GLIBCXX_3.4.21' not found (required by ./step.debug) 
> > ./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version 
> > `GLIBCXX_3.4.20' not found (required by ./step.debug) 
>
> These error messages typically indicate that either (i) you have multiple 
> compilers installed in your system and/or (ii) that deal.II or any of the 
> libraries it depends on (Trilinos, p4est, etc) were built with different 
> compilers or compiler versions. Could this be the case for you? 
>
> Best 
>   W. 
>
> -- 
>  
> Wolfgang Bangerth  email: bang...@colostate.edu 
>  
> www: http://www.math.colostate.edu/~bangerth/ 
>
>

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Re: [deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2017-08-12 Thread Wolfgang Bangerth

On 08/11/2017 06:42 PM, japa...@gmail.com wrote:

step.debug: RUN failed. Output:
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version `CXXABI_1.3.9' 
not found (required by ./step.debug)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version 
`GLIBCXX_3.4.21' not found (required by ./step.debug)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version 
`GLIBCXX_3.4.20' not found (required by ./step.debug)


These error messages typically indicate that either (i) you have multiple 
compilers installed in your system and/or (ii) that deal.II or any of the 
libraries it depends on (Trilinos, p4est, etc) were built with different 
compilers or compiler versions. Could this be the case for you?


Best
 W.

--

Wolfgang Bangerth  email: bange...@colostate.edu
   www: http://www.math.colostate.edu/~bangerth/

--
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[deal.II] Installation didn't give any errors but when I tried make test, it failed all tests

2017-08-11 Thread japan25
Hello, 

I tried installing deal.ii today. Installation went fine without any errors 
however when I did make test, it failed all 6 tests. What should I do? Any 
help is highly appreciated. Thanks!

The error I get is as follows:

Running quicktests...
Test project /home/japan/dealii/build/tests/quick_tests
Start 1: step.debug
1/6 Test #1: step.debug ...***Failed6.59 sec
make[7]: *** [tests/quick_tests/CMakeFiles/step.debug.run] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/step.debug.run.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/step.debug.run.dir/rule] Error 2
make[4]: *** [step.debug.run] Error 2
Test step.debug: RUN
===   OUTPUT BEGIN 
 ===
[  0%] Built target kill-step.debug-OK
[  0%] Built target obj_non_matching_inst
[  2%] Built target obj_non_matching_debug
[ 11%] Built target obj_boost_serialization_debug
[ 11%] Built target obj_boost_system_debug
[ 13%] Built target obj_boost_iostreams_debug
[ 15%] Built target obj_muparser_debug
[ 15%] Built target expand_instantiations_exe
[ 20%] Built target obj_numerics_inst
[ 28%] Built target obj_numerics_debug
[ 37%] Built target obj_fe_inst
[ 48%] Built target obj_fe_debug
[ 51%] Built target obj_dofs_inst
[ 53%] Built target obj_dofs_debug
[ 57%] Built target obj_lac_inst
[ 66%] Built target obj_lac_debug
[ 68%] Built target obj_base_inst
[ 82%] Built target obj_base_debug
[ 86%] Built target obj_grid_inst
[ 88%] Built target obj_grid_debug
[ 88%] Built target obj_hp_inst
[ 91%] Built target obj_hp_debug
[ 93%] Built target obj_multigrid_inst
[ 95%] Built target obj_multigrid_debug
[ 97%] Built target obj_distributed_inst
[ 97%] Built target obj_distributed_debug
[ 97%] Built target obj_algorithms_inst
[ 97%] Built target obj_algorithms_debug
[ 97%] Built target obj_matrix_free_inst
[ 97%] Built target obj_matrix_free_debug
[ 97%] Built target obj_meshworker_inst
[ 97%] Built target obj_meshworker_debug
[ 97%] Built target obj_opencascade_inst
[100%] Built target obj_opencascade_debug
[100%] Built target obj_physics_inst
[100%] Built target obj_physics_debug
[100%] Built target obj_physics_elasticity_inst
[100%] Built target obj_physics_elasticity_debug
[100%] Built target deal_II.g
[100%] Built target step.debug
step.debug: RUN failed. Output:
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version 
`CXXABI_1.3.9' not found (required by ./step.debug)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version 
`GLIBCXX_3.4.21' not found (required by ./step.debug)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version 
`GLIBCXX_3.4.20' not found (required by ./step.debug)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version 
`CXXABI_1.3.9' not found (required by 
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version 
`GLIBCXX_3.4.21' not found (required by 
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version 
`GLIBCXX_3.4.20' not found (required by 
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version 
`CXXABI_1.3.8' not found (required by 
/home/japan/dealii/build/lib/libdeal_II.g.so.9.0.0-pre)
./step.debug: /home/japan/anaconda3/lib/libstdc++.so.6: version 
`GLIBCXX_3.4.21' not found (required by 
/usr/lib/x86_64-linux-gnu/libtbb.so.2)
tests/quick_tests/CMakeFiles/step.debug.run.dir/build.make:57: recipe for 
target 'tests/quick_tests/CMakeFiles/step.debug.run' failed
CMakeFiles/Makefile2:10014: recipe for target 
'tests/quick_tests/CMakeFiles/step.debug.run.dir/all' failed
CMakeFiles/Makefile2:10021: recipe for target 
'tests/quick_tests/CMakeFiles/step.debug.run.dir/rule' failed
Makefile:3425: recipe for target 'step.debug.run' failed


step.debug: **RUN failed***

===OUTPUT END   
===
Expected stage PASSED - aborting
CMake Error at /home/japan/dealii/cmake/scripts/run_test.cmake:140 
(MESSAGE):
  *** abort



Start 2: step.release
2/6 Test #2: step.release .***Failed4.57 sec
make[7]: *** [tests/quick_tests/CMakeFiles/step.release.run] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/step.release.run.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/step.release.run.dir/rule] Error 
2
make[4]: *** [step.release.run] Error 2
Test step.release: RUN
===   OUTPUT BEGIN 
 ===
[  0%] Built target kill-step.release-OK
[  0%] Built target obj_non_matching_inst
[  0%] Built target obj_non_matching_release
[  9%] Built target obj_boost_serialization_release
[  9%] Built target obj_boost_system_release
[  9%] Built target obj_boost_iostreams_release
[  9%] Built target obj_muparser_release
[  9%] Built target expand_instantiations_exe
[ 14%] Built target