Re: [deal.II] Re: error while installing dealii using candi

[Ahmad Shahba]

By using the -j1 argument, you are requesting candi to use 1 process for
compilation. If you are interested to engage, say 2 processes, you should
pass -j2 to the candi shell script. Something like

./candi.sh -j2

If you visit the github homepage of candi, you’ll see a whole bunch of
options for controlling the way candi goes about compiling and installing
deal.ii and its dependencies.

On Thu, Jul 21, 2022 at 11:11 AM erkin yildiz  wrote:

> Thank you for your suggestion. JOBS = 1 is the default in candi.sh and
> passing -j1 does not make any difference. Could it be related to the flag
> -std=c++17? How can I impose it?
>
> Thanks for your help
> Erkin
>
> Wolfgang Bangerth , 21 Tem 2022 Per, 16:55
> tarihinde şunu yazdı:
>
>> On 7/21/22 06:00, erkin yildiz wrote:
>> > **
>> >
>> > Can you please suggest me how to use only one or two cores? Please find
>> > attached the log file
>>
>> Use the flag -j1 or -j2 on the command line.
>>
>> Best
>>   W.
>>
>> --
>> 
>> Wolfgang Bangerth  email: bange...@colostate.edu
>> www: http://www.math.colostate.edu/~bangerth/
>>
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Re: [deal.II] Re: error while installing dealii using candi

[erkin yildiz]

Thank you for your suggestion. JOBS = 1 is the default in candi.sh and
passing -j1 does not make any difference. Could it be related to the flag
-std=c++17? How can I impose it?

Thanks for your help
Erkin

Wolfgang Bangerth , 21 Tem 2022 Per, 16:55
tarihinde şunu yazdı:

> On 7/21/22 06:00, erkin yildiz wrote:
> > **
> >
> > Can you please suggest me how to use only one or two cores? Please find
> > attached the log file
>
> Use the flag -j1 or -j2 on the command line.
>
> Best
>   W.
>
> --
> 
> Wolfgang Bangerth  email: bange...@colostate.edu
> www: http://www.math.colostate.edu/~bangerth/
>
> --
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>

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Re: [deal.II] Re: error while installing dealii using candi

[Wolfgang Bangerth]

On 7/21/22 06:00, erkin yildiz wrote:

**

Can you please suggest me how to use only one or two cores? Please find 
attached the log file


Use the flag -j1 or -j2 on the command line.

Best
 W.

--

Wolfgang Bangerth  email: bange...@colostate.edu
   www: http://www.math.colostate.edu/~bangerth/

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[deal.II] Re: error while installing dealii using candi

[Bruno Turcksin]

Hello,

This error often happens when you don't have enough memory to compile the 
program. Try using only one or two cores.

Best,

Bruno

On Wednesday, July 6, 2022 at 4:01:45 AM UTC-4 me20...@iittp.ac.in wrote:

> Dear all,
> please find the error attached.
>
> thank you in advance.[image: PHOTO-2022-07-06-00-19-11.jpg]
>

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Re: [deal.II] Re: Error while installing dealii

[Wolfgang Bangerth]

On 3/15/22 23:26, PUNITH M wrote:


cmake -DTPL_ENABLE_MPI=ON -DMPI_BASE_DIR=/apps/compilers/openmpi/4.1.1 
-DTrilinos_ENABLE_ALL_PACKAGES=ON -DTPL_ENABLE_Boost=OFF 
-DBUILD_SHARED_LIBS=ON -DTPL_ENABLE_Netcdf=OFF 
-DCMAKE_INSTALL_PREFIX=/apps/libs/Trillions-13.2 ../


Is this the same MPI installation as you used for deal.II?

Best
 W.

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   www: http://www.math.colostate.edu/~bangerth/

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[deal.II] Re: Error while installing dealii

[PUNITH M]

S I did with the following options 

cmake -DTPL_ENABLE_MPI=ON -DMPI_BASE_DIR=/apps/compilers/openmpi/4.1.1 
-DTrilinos_ENABLE_ALL_PACKAGES=ON -DTPL_ENABLE_Boost=OFF 
-DBUILD_SHARED_LIBS=ON -DTPL_ENABLE_Netcdf=OFF 
-DCMAKE_INSTALL_PREFIX=/apps/libs/Trillions-13.2 ../

On Tuesday, March 15, 2022 at 6:05:48 PM UTC+5:30 bruno.t...@gmail.com 
wrote:

> Hello,
>
> Did you configure Trilinos with MPI support?
>
> Best,
>
> Bruno
>
> On Tuesday, March 15, 2022 at 7:09:55 AM UTC-4 punith...@gmail.com wrote:
>
>> I've compiled a deal.ii using CMake with the below options 
>>
>> cmake -DCMAKE_INSTALL_PREFIX=/apps/codes/deal_II/9.3.3 
>> -DHDF5_DIR=/apps/libs/hdf5/gcc/1.12.1 -DP4EST_DIR=/apps/libs/p4est-2.8 
>> -DDEAL_II_WITH_MPI=ON -DTRILINOS_DIR=/apps/libs/Trillions-13.2 ../
>>
>> compile was successful
>> while installing using the command* make --jobs=4 install *I'm getting 
>> the below error
>>
>> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
>> 'Epetra_MpiComm::Epetra_MpiComm(int)'
>> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
>> 'Teuchos::details::safeCommFree(int*)'
>> collect2: error: ld returned 1 exit status
>> make[2]: *** [bin/step-10.release] Error 1
>> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
>> 'Epetra_MpiComm::Epetra_MpiComm(int)'
>> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
>> 'Teuchos::details::safeCommFree(int*)'
>> make[1]: *** [examples/CMakeFiles/step-10.release.dir/all] Error 2
>> make[1]: *** Waiting for unfinished jobs
>> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 'collect2: 
>> error: ld returned 1 exit status
>> Epetra_MpiComm::Epetra_MpiComm(int)'
>> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
>> 'Teuchos::details::safeCommFree(int*)'
>> collect2: error: ld returned 1 exit status
>> make[2]: *** [bin/step-12.release] Error 1
>> make[2]: *** [bin/step-11.release] Error 1
>> make[1]: *** [examples/CMakeFiles/step-12.release.dir/all] Error 2
>> make[1]: *** [examples/CMakeFiles/step-11.release.dir/all] Error 2
>> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
>> 'Epetra_MpiComm::Epetra_MpiComm(int)'
>> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
>> 'Teuchos::details::safeCommFree(int*)'
>> collect2: error: ld returned 1 exit status
>> make[2]: *** [bin/step-1.release] Error 1
>> make[1]: *** [examples/CMakeFiles/step-1.release.dir/all] Error 2
>> make: *** [all] Error 2
>>
>

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[deal.II] Re: Error while installing dealii

[Bruno Turcksin]

Hello,

Did you configure Trilinos with MPI support?

Best,

Bruno

On Tuesday, March 15, 2022 at 7:09:55 AM UTC-4 punith...@gmail.com wrote:

> I've compiled a deal.ii using CMake with the below options 
>
> cmake -DCMAKE_INSTALL_PREFIX=/apps/codes/deal_II/9.3.3 
> -DHDF5_DIR=/apps/libs/hdf5/gcc/1.12.1 -DP4EST_DIR=/apps/libs/p4est-2.8 
> -DDEAL_II_WITH_MPI=ON -DTRILINOS_DIR=/apps/libs/Trillions-13.2 ../
>
> compile was successful
> while installing using the command* make --jobs=4 install *I'm getting 
> the below error
>
> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
> 'Epetra_MpiComm::Epetra_MpiComm(int)'
> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
> 'Teuchos::details::safeCommFree(int*)'
> collect2: error: ld returned 1 exit status
> make[2]: *** [bin/step-10.release] Error 1
> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
> 'Epetra_MpiComm::Epetra_MpiComm(int)'
> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
> 'Teuchos::details::safeCommFree(int*)'
> make[1]: *** [examples/CMakeFiles/step-10.release.dir/all] Error 2
> make[1]: *** Waiting for unfinished jobs
> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 'collect2: 
> error: ld returned 1 exit status
> Epetra_MpiComm::Epetra_MpiComm(int)'
> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
> 'Teuchos::details::safeCommFree(int*)'
> collect2: error: ld returned 1 exit status
> make[2]: *** [bin/step-12.release] Error 1
> make[2]: *** [bin/step-11.release] Error 1
> make[1]: *** [examples/CMakeFiles/step-12.release.dir/all] Error 2
> make[1]: *** [examples/CMakeFiles/step-11.release.dir/all] Error 2
> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
> 'Epetra_MpiComm::Epetra_MpiComm(int)'
> ../lib/libdeal_II.so.9.3.3: error: undefined reference to 
> 'Teuchos::details::safeCommFree(int*)'
> collect2: error: ld returned 1 exit status
> make[2]: *** [bin/step-1.release] Error 1
> make[1]: *** [examples/CMakeFiles/step-1.release.dir/all] Error 2
> make: *** [all] Error 2
>

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[deal.II] Re: Error while installing dealii

[Bruno Turcksin]

Prakash,

How did you configure deal.II?

Best,

Bruno

On Friday, July 3, 2020 at 5:54:23 AM UTC-4, ME20S001 Bardawal Prakash 
wrote:
>
> Hello,
>I got error while installing dealii, can someone help me for 
> solving this issue?
> Here I'm attaching snapshots of that error message
>
> Thanks & Regards,
> Prakash.
>

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Re: [deal.II] Re: error while installing dealii

[ME20S001 Bardawal Prakash]

Thanks, I will try with that modification

On Wed, Jun 24, 2020, 5:05 PM simon...@gmail.com 
wrote:

> Hi,
> In your first sceenshot you can see this error message:
>
> "virtual memory exhausted: Cannot allocate memory"
>
> From your other screenshots it looks like you are running ubuntu in a
> virtual box. If that is the case, I would expect that increasing the RAM of
> your virtual machine will fix the problem. If I'm not mistaken, at least
> 3GB is needed to compile dealii, so maybe < 4GB would be a good choice.
>
> Best,
> Simon
>
> On Wednesday, June 24, 2020 at 1:03:16 PM UTC+2 me20...@iittp.ac.in wrote:
>
>>  1. While running *make* command, after 4 to 5 hours i'm getting error
>> like internal compiler error:*killed ( program ccplus ) * or  fatal error
>> :*killed signal terminated program ccplus.*
>> 2.while running the command again it is moving 4 to 5% forward in 3 to 4
>> hours  and again getting the same error.
>> 3.I'm new to start dealii, can you help me for solving  this issue and
>> here  i'm attaching few  snapshots of this error.
>>
>>
>> --
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> 
> .
>

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[deal.II] Re: error while installing dealii

[simon...@gmail.com]

Hi,
In your first sceenshot you can see this error message:

"virtual memory exhausted: Cannot allocate memory"

>From your other screenshots it looks like you are running ubuntu in a 
virtual box. If that is the case, I would expect that increasing the RAM of 
your virtual machine will fix the problem. If I'm not mistaken, at least 
3GB is needed to compile dealii, so maybe < 4GB would be a good choice.

Best,
Simon

On Wednesday, June 24, 2020 at 1:03:16 PM UTC+2 me20...@iittp.ac.in wrote:

>  1. While running *make* command, after 4 to 5 hours i'm getting error 
> like internal compiler error:*killed ( program ccplus ) * or  fatal 
> error:*killed 
> signal terminated program ccplus.*
> 2.while running the command again it is moving 4 to 5% forward in 3 to 4 
> hours  and again getting the same error.
> 3.I'm new to start dealii, can you help me for solving  this issue and 
> here  i'm attaching few  snapshots of this error.
>
>
>

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