Re: [deal.II] dealii installation Mac OS 10.15.5 (Catalina)

[Deepak Kukrety]

Dear Praveen & David,

Thanks but I may need little more direction in trying to make this run. I 
deeply appreciate your help.

Regards
Deepak


From: "dealii@googlegroups.com"  on behalf of Praveen 
C 
Reply to: "dealii@googlegroups.com" 
Date: Tuesday, 8 December 2020 at 10:10 PM
To: "Deal. II Googlegroup" 
Subject: Re: [deal.II] dealii installation Mac OS 10.15.5 (Catalina)

I think this should work

arch -x86_64 ./step-1


On 08-Dec-2020, at 7:33 PM, Wells, David 
mailto:drwe...@email.unc.edu>> wrote:

Hi Deepak,

You may be the first person to ever run deal.II on the new M1 Mac, 
congratulations :)

I don't have an M1 machine so I will have to make some educated guesses on how 
to fix this. Executing the mac bundle directly won't work since its compiled 
for a different architecture. Executing it with rosetta2 should work, but I 
don't know precisely how to do this: Something like

rosetta2 ./step-1

Might work. Can you give that a try?

Best,
David

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Re: [deal.II] dealii installation Mac OS 10.15.5 (Catalina)

[Praveen C]

I think this should work

arch -x86_64 ./step-1

> On 08-Dec-2020, at 7:33 PM, Wells, David  wrote:
> 
> Hi Deepak,
> 
> You may be the first person to ever run deal.II on the new M1 Mac, 
> congratulations :)
> 
> I don't have an M1 machine so I will have to make some educated guesses on 
> how to fix this. Executing the mac bundle directly won't work since its 
> compiled for a different architecture. Executing it with rosetta2 should 
> work, but I don't know precisely how to do this: Something like
> 
> rosetta2 ./step-1
> 
> Might work. Can you give that a try?
> 
> Best,
> David

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Re: [deal.II] dealii installation Mac OS 10.15.5 (Catalina)

[Deepak Kukrety]

Thanks for your reply, David. 

I reverted to 9.1.0 for the time being and it's working. I am intending to 
finish some coding assignments after which I intend to try and update to 
the latest version of deal.ii. This time, I will try to compile it from 
source code and will reach out again, if I run into problems. 

Regards 
Deepak

On Friday, 26 June 2020 00:16:52 UTC+8, David Wells wrote:
>
> Hi Deepak,
>
> I think that we have now fixed our Mac packages, so at the moment I think 
> the best answer would be to download the new version of the mac bundle for 
> deal.II from our GitHub release page. I had exactly the same error as you 
> did with the older version of the mac bundle and the new version fixed it 
> for me, so I am optimistic that it will work for you too.
>
> > I don't understand the Mac OS or Linux environment too well, so please 
> excuse me for asking - but when you say "compile yourself"  - what do you 
> mean? and is there a documented "procedure" for compiling that I can follow?
>
> This is a completely reasonable question :) I meant that you should 
> download the source code, configure your local copy for your machine, 
> compile it, and install it. We have detailed instructions on how to do this 
> on the web site:
>
> https://www.dealii.org/current/readme.html
>
> Do you see what to do? Please post again if you still have questions.
>
> Best,
> David
>
> On Wed, Jun 24, 2020 at 1:19 AM Deepak Kukrety  > wrote:
>
>> Hi David, 
>>
>> Thanks for confirming this. On a related note, may I ask which earlier 
>> version could be a safe bet to install? 
>>
>> I don't understand the Mac OS or Linux environment too well, so please 
>> excuse me for asking - but when you say "compile yourself"  - what do you 
>> mean? and is there a documented "procedure" for compiling that I can 
>> follow? 
>>
>> Regards 
>> Deepak
>>
>>
>>
>>
>> On Tuesday, 23 June 2020 23:30:53 UTC+8, David Wells wrote:
>>>
>>> Hi Deepak,
>>>
>>> This is a known issue with the current version of the mac bundle - it 
>>> doesn't work with Catalina. We are in the process of fixing this. For now, 
>>> unfortunately, you will have to either use an older version of deal.II or 
>>> compile it yourself.
>>>
>>> Sorry,
>>> David
>>>
>>> On Mon, Jun 22, 2020 at 7:05 PM Deepak Kukrety  
>>> wrote:
>>>
 Dear All, 

 I recently updated deal ii, but I am unable to run the programs. The 
 main problem appears as a set of warnings when starting to "make": 

 ld: warning: directory not found for option 
 '-L/Applications/deal.II.app/Contents/Resources/spack/opt/spack/darwin-catalina-x86_64/clang-11.0.3-apple/zlib-1.2.11-rqiqrujgg5aemhk7eqjk3asbaukff'

 ld: warning: directory not found for option 
 '-L/Applications/deal.II.app/Contents/Resources/spack/opt/spack/darwin-catalina-x86_64/clang-11.0.3-apple/dealii-develop-rrf4rjxvntgbw2l44kbr6aoa4xnr4gsb/lib'

 I tried to make run, despite these warnings and get the following 
 errors: 


 bash-3.2$ make run 

 [ 66%] Built target step-1

 *Scanning dependencies of target run*

 [100%] *Run step-1 with Debug configuration*

 dyld: malformed mach-o: load commands size (33848) > 32768

 make[3]: *** [CMakeFiles/run] Abort trap: 6

 make[2]: *** [CMakeFiles/run.dir/all] Error 2

 make[1]: *** [CMakeFiles/run.dir/rule] Error 2

 make: *** [run] Error 2



 I have tried re-installing, going back to an older version of make, but 
 I seem stuck with this problem. 


 Any help will be highly appreciated. 


 Regards 

 Deepak






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 .

>>> -- 
>> The deal.II project is located at http://www.dealii.org/
>> For mailing list/forum options, see 
>> https://groups.google.com/d/forum/dealii?hl=en
>> --- 
>> You received this message because you are subscribed to the Google Groups 
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>>  
>> 

Re: [deal.II] dealii installation Mac OS 10.15.5 (Catalina)

[David Wells]

Hi Deepak,

I think that we have now fixed our Mac packages, so at the moment I think
the best answer would be to download the new version of the mac bundle for
deal.II from our GitHub release page. I had exactly the same error as you
did with the older version of the mac bundle and the new version fixed it
for me, so I am optimistic that it will work for you too.

> I don't understand the Mac OS or Linux environment too well, so please
excuse me for asking - but when you say "compile yourself"  - what do you
mean? and is there a documented "procedure" for compiling that I can follow?

This is a completely reasonable question :) I meant that you should
download the source code, configure your local copy for your machine,
compile it, and install it. We have detailed instructions on how to do this
on the web site:

https://www.dealii.org/current/readme.html

Do you see what to do? Please post again if you still have questions.

Best,
David

On Wed, Jun 24, 2020 at 1:19 AM Deepak Kukrety 
wrote:

> Hi David,
>
> Thanks for confirming this. On a related note, may I ask which earlier
> version could be a safe bet to install?
>
> I don't understand the Mac OS or Linux environment too well, so please
> excuse me for asking - but when you say "compile yourself"  - what do you
> mean? and is there a documented "procedure" for compiling that I can
> follow?
>
> Regards
> Deepak
>
>
>
>
> On Tuesday, 23 June 2020 23:30:53 UTC+8, David Wells wrote:
>>
>> Hi Deepak,
>>
>> This is a known issue with the current version of the mac bundle - it
>> doesn't work with Catalina. We are in the process of fixing this. For now,
>> unfortunately, you will have to either use an older version of deal.II or
>> compile it yourself.
>>
>> Sorry,
>> David
>>
>> On Mon, Jun 22, 2020 at 7:05 PM Deepak Kukrety 
>> wrote:
>>
>>> Dear All,
>>>
>>> I recently updated deal ii, but I am unable to run the programs. The
>>> main problem appears as a set of warnings when starting to "make":
>>>
>>> ld: warning: directory not found for option
>>> '-L/Applications/deal.II.app/Contents/Resources/spack/opt/spack/darwin-catalina-x86_64/clang-11.0.3-apple/zlib-1.2.11-rqiqrujgg5aemhk7eqjk3asbaukff'
>>>
>>> ld: warning: directory not found for option
>>> '-L/Applications/deal.II.app/Contents/Resources/spack/opt/spack/darwin-catalina-x86_64/clang-11.0.3-apple/dealii-develop-rrf4rjxvntgbw2l44kbr6aoa4xnr4gsb/lib'
>>>
>>> I tried to make run, despite these warnings and get the following
>>> errors:
>>>
>>>
>>> bash-3.2$ make run
>>>
>>> [ 66%] Built target step-1
>>>
>>> *Scanning dependencies of target run*
>>>
>>> [100%] *Run step-1 with Debug configuration*
>>>
>>> dyld: malformed mach-o: load commands size (33848) > 32768
>>>
>>> make[3]: *** [CMakeFiles/run] Abort trap: 6
>>>
>>> make[2]: *** [CMakeFiles/run.dir/all] Error 2
>>>
>>> make[1]: *** [CMakeFiles/run.dir/rule] Error 2
>>>
>>> make: *** [run] Error 2
>>>
>>>
>>>
>>> I have tried re-installing, going back to an older version of make, but
>>> I seem stuck with this problem.
>>>
>>>
>>> Any help will be highly appreciated.
>>>
>>>
>>> Regards
>>>
>>> Deepak
>>>
>>>
>>>
>>>
>>>
>>>
>>> --
>>> The deal.II project is located at http://www.dealii.org/
>>> For mailing list/forum options, see
>>> https://groups.google.com/d/forum/dealii?hl=en
>>> ---
>>> You received this message because you are subscribed to the Google
>>> Groups "deal.II User Group" group.
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>>> https://groups.google.com/d/msgid/dealii/582c2a04-9796-4300-bad5-e5e3877d6b06o%40googlegroups.com
>>> 
>>> .
>>>
>> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see
> https://groups.google.com/d/forum/dealii?hl=en
> ---
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> 
> .
>

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Re: [deal.II] dealii installation Mac OS 10.15.5 (Catalina)

[Deepak Kukrety]

Hi David, 

Thanks for confirming this. On a related note, may I ask which earlier 
version could be a safe bet to install? 

I don't understand the Mac OS or Linux environment too well, so please 
excuse me for asking - but when you say "compile yourself"  - what do you 
mean? and is there a documented "procedure" for compiling that I can 
follow? 

Regards 
Deepak




On Tuesday, 23 June 2020 23:30:53 UTC+8, David Wells wrote:
>
> Hi Deepak,
>
> This is a known issue with the current version of the mac bundle - it 
> doesn't work with Catalina. We are in the process of fixing this. For now, 
> unfortunately, you will have to either use an older version of deal.II or 
> compile it yourself.
>
> Sorry,
> David
>
> On Mon, Jun 22, 2020 at 7:05 PM Deepak Kukrety  > wrote:
>
>> Dear All, 
>>
>> I recently updated deal ii, but I am unable to run the programs. The main 
>> problem appears as a set of warnings when starting to "make": 
>>
>> ld: warning: directory not found for option 
>> '-L/Applications/deal.II.app/Contents/Resources/spack/opt/spack/darwin-catalina-x86_64/clang-11.0.3-apple/zlib-1.2.11-rqiqrujgg5aemhk7eqjk3asbaukff'
>>
>> ld: warning: directory not found for option 
>> '-L/Applications/deal.II.app/Contents/Resources/spack/opt/spack/darwin-catalina-x86_64/clang-11.0.3-apple/dealii-develop-rrf4rjxvntgbw2l44kbr6aoa4xnr4gsb/lib'
>>
>> I tried to make run, despite these warnings and get the following errors: 
>>
>>
>> bash-3.2$ make run 
>>
>> [ 66%] Built target step-1
>>
>> *Scanning dependencies of target run*
>>
>> [100%] *Run step-1 with Debug configuration*
>>
>> dyld: malformed mach-o: load commands size (33848) > 32768
>>
>> make[3]: *** [CMakeFiles/run] Abort trap: 6
>>
>> make[2]: *** [CMakeFiles/run.dir/all] Error 2
>>
>> make[1]: *** [CMakeFiles/run.dir/rule] Error 2
>>
>> make: *** [run] Error 2
>>
>>
>>
>> I have tried re-installing, going back to an older version of make, but I 
>> seem stuck with this problem. 
>>
>>
>> Any help will be highly appreciated. 
>>
>>
>> Regards 
>>
>> Deepak
>>
>>
>>
>>
>>
>>
>> -- 
>> The deal.II project is located at http://www.dealii.org/
>> For mailing list/forum options, see 
>> https://groups.google.com/d/forum/dealii?hl=en
>> --- 
>> You received this message because you are subscribed to the Google Groups 
>> "deal.II User Group" group.
>> To unsubscribe from this group and stop receiving emails from it, send an 
>> email to dea...@googlegroups.com .
>> To view this discussion on the web visit 
>> https://groups.google.com/d/msgid/dealii/582c2a04-9796-4300-bad5-e5e3877d6b06o%40googlegroups.com
>>  
>> 
>> .
>>
>

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Re: [deal.II] dealii installation Mac OS 10.15.5 (Catalina)

[David Wells]

Hi Deepak,

This is a known issue with the current version of the mac bundle - it
doesn't work with Catalina. We are in the process of fixing this. For now,
unfortunately, you will have to either use an older version of deal.II or
compile it yourself.

Sorry,
David

On Mon, Jun 22, 2020 at 7:05 PM Deepak Kukrety 
wrote:

> Dear All,
>
> I recently updated deal ii, but I am unable to run the programs. The main
> problem appears as a set of warnings when starting to "make":
>
> ld: warning: directory not found for option
> '-L/Applications/deal.II.app/Contents/Resources/spack/opt/spack/darwin-catalina-x86_64/clang-11.0.3-apple/zlib-1.2.11-rqiqrujgg5aemhk7eqjk3asbaukff'
>
> ld: warning: directory not found for option
> '-L/Applications/deal.II.app/Contents/Resources/spack/opt/spack/darwin-catalina-x86_64/clang-11.0.3-apple/dealii-develop-rrf4rjxvntgbw2l44kbr6aoa4xnr4gsb/lib'
>
> I tried to make run, despite these warnings and get the following errors:
>
>
> bash-3.2$ make run
>
> [ 66%] Built target step-1
>
> *Scanning dependencies of target run*
>
> [100%] *Run step-1 with Debug configuration*
>
> dyld: malformed mach-o: load commands size (33848) > 32768
>
> make[3]: *** [CMakeFiles/run] Abort trap: 6
>
> make[2]: *** [CMakeFiles/run.dir/all] Error 2
>
> make[1]: *** [CMakeFiles/run.dir/rule] Error 2
>
> make: *** [run] Error 2
>
>
>
> I have tried re-installing, going back to an older version of make, but I
> seem stuck with this problem.
>
>
> Any help will be highly appreciated.
>
>
> Regards
>
> Deepak
>
>
>
>
>
>
> --
> The deal.II project is located at http://www.dealii.org/
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> 
> .
>

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