Re: My sprint report (Was: Annual Debian Med sprint: 04.-07. February 2016 in Copenhagen)

2016-02-16 Thread jison
On behalf of ELIXIR / DTU I'd like to say thanks to the Debian guys, had a real blast and it's a pleasure with such hard working people. A slight clarification (this is often mixed up): EDAM is a simple controlled vocabulary (for bio-topics, operations data and data formats). It is used to

Re: My sprint report

2016-02-16 Thread Andreas Tille
On Tue, Feb 16, 2016 at 02:42:50PM +0100, Ole Streicher wrote: > However, I do not fully understand what to do then: are these fields > then columns in some table? select * from upstream_metadata ; > How do I access them from webtools/tasks.py? > I tried to follow this with the references as

Re: My sprint report

2016-02-16 Thread Ole Streicher
Andreas Tille writes: > On Tue, Feb 16, 2016 at 11:19:12AM +0100, Ole Streicher wrote: >> >> From the udd git log, I can see that you also completed the reading of >> upstream/metadata in udd. Could you give me a hint on how to use this in >> blendstasktools? > > Its hard to

Re: My sprint report

2016-02-16 Thread Ole Streicher
Hi Andreas, Andreas Tille writes: > In the second part I created a UDD gatherer of the debian/upstream/edam > files created by other sprint participants to make a cross link between > Debian and EDAM. The UDD gatherer fetches the data from these files and > is exposing the