Your message dated Thu, 21 May 2020 07:48:47 +0000
with message-id <e1jbfwd-000ii0...@fasolo.debian.org>
and subject line Bug#959109: fixed in octave 5.2.0-2
has caused the Debian Bug report #959109,
regarding octave: load on HDF5 files containing simple strings crashes
interpreter
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
959109: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=959109
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: octave
Version: 5.2.0-1+b1
Severity: normal
Tags: patch
Dear Maintainer,
When loading HDF5 files with simple strings in them, the Octave
interpreter crashes. The issue can be reproduced with
apt install octave python3-h5py
python3 -c "import h5py, numpy; f = h5py.File('outfile.hdf5', 'w');
f.create_dataset('scan/date', data=numpy.string_('Mon Jun 18 03:34:30 2018'));
f.close()"
octave-cli --eval "load outfile.hdf5"
The problem was reported upstream at
https://savannah.gnu.org/bugs/index.php?58268
and an upstream patch is available at
https://hg.savannah.gnu.org/hgweb/octave/rev/9646d752c76c
Here's an MR on Salsa which adds the upstream patch to the Debian
package:
https://salsa.debian.org/pkg-octave-team/octave/-/merge_requests/2
-- System Information:
Debian Release: bullseye/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 5.3.0-46-generic (SMP w/8 CPU cores)
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE=C (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: unable to detect
Versions of packages octave depends on:
ii libamd2 1:5.7.2+dfsg-1
ii libbz2-1.0 1.0.8-2
ii libc6 2.30-4
ii libccolamd2 1:5.7.2+dfsg-1
ii libcholmod3 1:5.7.2+dfsg-1
ii libcolamd2 1:5.7.2+dfsg-1
ii libcxsparse3 1:5.7.2+dfsg-1
ii libfftw3-double3 3.3.8-2
ii libfftw3-single3 3.3.8-2
ii libfltk-gl1.3 1.3.4-10
ii libfltk1.3 1.3.4-10
ii libgcc-s1 10-20200418-1
ii libgl1 1.3.1-1
ii libglpk40 4.65-2
ii liboctave7 5.2.0-1+b1
ii libportaudio2 19.6.0-1
ii libqhull7 2015.2-4
ii libqscintilla2-qt5-15 2.11.2+dfsg-6+b1
ii libqt5core5a 5.12.5+dfsg-10
ii libqt5gui5 5.12.5+dfsg-10
ii libqt5help5 5.12.5-2+b2
ii libqt5network5 5.12.5+dfsg-10
ii libqt5printsupport5 5.12.5+dfsg-10
ii libqt5widgets5 5.12.5+dfsg-10
ii libqt5xml5 5.12.5+dfsg-10
ii libsndfile1 1.0.28-7
ii libstdc++6 10-20200418-1
ii libsuitesparseconfig5 1:5.7.2+dfsg-1
ii libx11-6 2:1.6.9-2
ii octave-common 5.2.0-1
ii texinfo 6.7.0.dfsg.2-5
ii zlib1g 1:1.2.11.dfsg-2
Versions of packages octave recommends:
ii default-jre-headless 2:1.11-72
ii epstool 3.09-2
ii gnuplot-qt [gnuplot-x11] 5.2.8+dfsg1-2
ii libopenblas0 0.3.9+ds-1
ii octave-doc 5.2.0-1
ii pstoedit 3.75-1
Versions of packages octave suggests:
pn liboctave-dev <none>
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: octave
Source-Version: 5.2.0-2
Done: =?utf-8?q?S=C3=A9bastien_Villemot?= <sebast...@debian.org>
We believe that the bug you reported is fixed in the latest version of
octave, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 959...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sébastien Villemot <sebast...@debian.org> (supplier of updated octave package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 20 May 2020 22:43:17 +0200
Source: octave
Architecture: source
Version: 5.2.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Octave Group <team+pkg-octave-t...@tracker.debian.org>
Changed-By: Sébastien Villemot <sebast...@debian.org>
Closes: 959109
Changes:
octave (5.2.0-2) unstable; urgency=medium
.
[ Sébastien Villemot ]
* /etc/octave.conf now corresponds to the site-specific octaverc.
Previously, it would correspond to the version-specific octaverc. The
latter
is not really meant to be locally modified.
* Move debian_missing_handler.m to site-specific directory.
This is more logical since it is now called from the site-specific
octaverc.
Also, this emphasizes the fact that it’s a Debian customization.
* Bump to debhelper 13
— drop B-D to dh-exec, instead use new variable substitution mechanism
— dh_missing now defaults to --fail-missing
— simplify override_dh_auto_test rule
* d/rules:
— enable dh_dwz, it seems to work now
— simplify using debhelper 12.8’s execute_after_* rules
* d/control: add Breaks against octave-nlopt < 2.6.1-8~
Former version of the package would need recompiling against every new
Octave version.
* Cosmetic fixes to capitalization of MATLAB®
* d/upstream/metadata: various improvements
.
[ Rafael Laboissière ]
* d/p/load-hdf5-string-crash.patch: New patch.
Thanks to Elvis Stansvik for the patch
(Closes: #959109)
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