Bug#840725: marked as done (libhmsbeagle: FTBFS and bd-uninstallable almost everywhere)
Your message dated Sun, 16 Oct 2016 13:34:28 + with message-id and subject line Bug#840725: fixed in libhmsbeagle 2.1.2+20160831-2 has caused the Debian Bug report #840725, regarding libhmsbeagle: FTBFS and bd-uninstallable almost everywhere to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 840725: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=840725 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems --- Begin Message --- Source: libhmsbeagle Version: 2.1.2+20160525-1 Severity: serious Hi, Your package failed to build on i386 with: /«BUILDDIR»/libhmsbeagle-2.1.2+20160525/libhmsbeagle/GPU/GPUInterface.h: In member function 'void opencl_device::GPUInterface::PrintfDeviceVector(GPUPtr, int, double, int*, Real)': /«BUILDDIR»/libhmsbeagle-2.1.2+20160525/libhmsbeagle/GPU/GPUInterface.h:188:55: error: there are no arguments to 'malloc' that depend on a template parameter, so a declaration of 'malloc' must be available [-fpermissive] Real* hPtr = (Real*) malloc(sizeof(Real) * length); ^ Also, the package is bd-uninstallable everywhere else because libpoclu-dev is not available. See https://buildd.debian.org/status/package.php?p=libhmsbeagle Emilio -- System Information: Debian Release: stretch/sid APT prefers unstable APT policy: (800, 'unstable'), (700, 'experimental'), (650, 'testing'), (500, 'unstable-debug') Architecture: amd64 (x86_64) Foreign Architectures: i386, armhf Kernel: Linux 4.7.0-1-amd64 (SMP w/4 CPU cores) Locale: LANG=en_GB.utf8, LC_CTYPE=en_GB.utf8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) --- End Message --- --- Begin Message --- Source: libhmsbeagle Source-Version: 2.1.2+20160831-2 We believe that the bug you reported is fixed in the latest version of libhmsbeagle, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 840...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille (supplier of updated libhmsbeagle package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sun, 16 Oct 2016 15:08:44 +0200 Source: libhmsbeagle Binary: libhmsbeagle-dev libhmsbeagle1v5 libhmsbeagle-java Architecture: source amd64 Version: 2.1.2+20160831-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libhmsbeagle-dev - High-performance lib for Bayesian and Maximum Likelihood phylogen libhmsbeagle-java - High-performance lib for Bayesian and Maximum Likelihood phylogen libhmsbeagle1v5 - High-performance lib for Bayesian and Maximum Likelihood phylogen Closes: 840725 Changes: libhmsbeagle (2.1.2+20160831-2) unstable; urgency=medium . * Skip tests on other architectures than amd64. Closes: #840725 Checksums-Sha1: 61826e279658b543954571625a4a6a392baca45f 2440 libhmsbeagle_2.1.2+20160831-2.dsc e587cc10e94952d0a2e20dc2e90b7f838da5bd3f 36028 libhmsbeagle_2.1.2+20160831-2.debian.tar.xz 6ce3cfc5ead6e06170ff5ed9086929b178a2020d 166198 libhmsbeagle-dev_2.1.2+20160831-2_amd64.deb c7103cb4b2d53a9f7212ff4759f694b9dae2fdc3 24028 libhmsbeagle-java_2.1.2+20160831-2_amd64.deb e0ddad84dde5b4d605067d95041e5368de548146 690386 libhmsbeagle1v5-dbgsym_2.1.2+20160831-2_amd64.deb 7f406b71103dd5eaa23993d9819f7d940c259baf 116354 libhmsbeagle1v5_2.1.2+20160831-2_amd64.deb Checksums-Sha256: caccd212bc8c4fd0f7efa0fbba10cbba81eb88dee561fa719d6d257c54bf80b6 2440 libhmsbeagle_2.1.2+20160831-2.dsc 1f7d0d22a381e5b5dd0d84ef448537b74832ac486942f4377d8d93b9af379fe0 36028 libhmsbeagle_2.1.2+20160831-2.debian.tar.xz c883d3439f0b345c428e6afb4b76fba529ccaf1c8bf11f3a4d651bfdf83c6ae3 166198 libhmsbeagle-dev_2.1.2+20160831-2_amd64.deb 882710dede356403b3c7b6bb1b2b36174b69ab6ce0134294b70845ea95937eda 24028 libhmsbeagle-java_2.1.2+20160831-2_amd64.deb ecbb4b2a46eda9f4d0c8103b2f7e60cb4467f42ce9119155e6fdd8a9a5748e4d 690386 libhmsbeagle1v5-dbgsym_2.1.2+20160831-2_amd64.deb b35cfdcd52f36c3766c60c1ca6a8e9ee1ef5f08fe207f56a3e8280a3fe804aac 116354 libhmsbeagle1v5_2.1.2+20160831-2_amd64.deb Files: 13d3d17f6cd3c3a7cfcdba074c8cc081 2440 libs optional
Bug#840725: marked as done (libhmsbeagle: FTBFS and bd-uninstallable almost everywhere)
Your message dated Sat, 15 Oct 2016 12:25:47 + with message-id and subject line Bug#840725: fixed in libhmsbeagle 2.1.2+20160831-1 has caused the Debian Bug report #840725, regarding libhmsbeagle: FTBFS and bd-uninstallable almost everywhere to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 840725: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=840725 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems --- Begin Message --- Source: libhmsbeagle Version: 2.1.2+20160525-1 Severity: serious Hi, Your package failed to build on i386 with: /«BUILDDIR»/libhmsbeagle-2.1.2+20160525/libhmsbeagle/GPU/GPUInterface.h: In member function 'void opencl_device::GPUInterface::PrintfDeviceVector(GPUPtr, int, double, int*, Real)': /«BUILDDIR»/libhmsbeagle-2.1.2+20160525/libhmsbeagle/GPU/GPUInterface.h:188:55: error: there are no arguments to 'malloc' that depend on a template parameter, so a declaration of 'malloc' must be available [-fpermissive] Real* hPtr = (Real*) malloc(sizeof(Real) * length); ^ Also, the package is bd-uninstallable everywhere else because libpoclu-dev is not available. See https://buildd.debian.org/status/package.php?p=libhmsbeagle Emilio -- System Information: Debian Release: stretch/sid APT prefers unstable APT policy: (800, 'unstable'), (700, 'experimental'), (650, 'testing'), (500, 'unstable-debug') Architecture: amd64 (x86_64) Foreign Architectures: i386, armhf Kernel: Linux 4.7.0-1-amd64 (SMP w/4 CPU cores) Locale: LANG=en_GB.utf8, LC_CTYPE=en_GB.utf8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) --- End Message --- --- Begin Message --- Source: libhmsbeagle Source-Version: 2.1.2+20160831-1 We believe that the bug you reported is fixed in the latest version of libhmsbeagle, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 840...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille (supplier of updated libhmsbeagle package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Sat, 15 Oct 2016 13:15:32 +0200 Source: libhmsbeagle Binary: libhmsbeagle-dev libhmsbeagle1v5 libhmsbeagle-java Architecture: source amd64 Version: 2.1.2+20160831-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libhmsbeagle-dev - High-performance lib for Bayesian and Maximum Likelihood phylogen libhmsbeagle-java - High-performance lib for Bayesian and Maximum Likelihood phylogen libhmsbeagle1v5 - High-performance lib for Bayesian and Maximum Likelihood phylogen Closes: 827120 840725 Changes: libhmsbeagle (2.1.2+20160831-1) unstable; urgency=medium . * New upstream commit * d/watch pointing to Github * ocl-icd-opencl-dev now provided by khronos-opencl-clhpp Closes: #840725 * Fixed symlink Closes: #827120 Checksums-Sha1: 267c764044a6cb5c232f4f04e76f7746541ca97c 2424 libhmsbeagle_2.1.2+20160831-1.dsc f5a6b9cb8b44d2a57a2d5a1cc21649f80736fe8d 248912 libhmsbeagle_2.1.2+20160831.orig.tar.xz 0fea75ed5138aab69a7fb91d8b4c6d0ed6d2b927 35948 libhmsbeagle_2.1.2+20160831-1.debian.tar.xz 94796f8feb1e87385de239ace019fda317cb3b6f 166138 libhmsbeagle-dev_2.1.2+20160831-1_amd64.deb 4f73b1a7e94f3fbd5043d467ca69f873d15fab9e 23982 libhmsbeagle-java_2.1.2+20160831-1_amd64.deb f93c2a4b425e90d4a4bb7dbc74c2ce4a3bfe0f33 690386 libhmsbeagle1v5-dbgsym_2.1.2+20160831-1_amd64.deb d7fb20303bcf390122f080e1394b6c19309750e5 116178 libhmsbeagle1v5_2.1.2+20160831-1_amd64.deb Checksums-Sha256: 9bc2c33ba4a63653ab20377bc3d80a31f7aebca555c2386b23f4b1ee64cfcf08 2424 libhmsbeagle_2.1.2+20160831-1.dsc 476fd0a17f2b6ea9560cd0f0c9105936f5da77b9c85717cfaa6042a861a9782f 248912 libhmsbeagle_2.1.2+20160831.orig.tar.xz 9c70812375add4e5a3860d17d0dcad9bfdc62181532264e28eebeee67e529600 35948 libhmsbeagle_2.1.2+20160831-1.debian.tar.xz d994f2606b3db5c2286c03fb05047e517fa884565cb25a4a1696acb435767362 166138 libhmsbeagle-dev_2.1.2+20160831-1_amd64.deb 3511c33ad082611947a6ecd1afb9303b243382ed3af3bab2cb73755b48809aad 23982 libhmsbeagle-java_2.1.2+2016