Bug#1007984: netpbm-free ready to upload

2022-11-02 Thread Andreas Tille
Hi Andreas, Am Thu, Oct 06, 2022 at 07:09:13PM +0200 schrieb Andreas Metzler: > > I noticed you added some missing information to d/copyright > > of netpbm-free. Thanks a lot for doing so. Do you think it > > is time for another upload? > > I invested a couple of hours but sadly it is not a

Bug#1023283: ITP: snippy -- rapid haploid variant calling and core genome alignment

2022-11-01 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: snippy -- rapid haploid variant calling and core genome alignment Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: snippy Version : 4.6.0 Upstream Author : Torsten Seemann * URL : https://github.com

Bug#1023262: ITP: any2fasta -- convert various sequence formats to FASTA

2022-11-01 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: any2fasta -- convert various sequence formats to FASTA Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: any2fasta Version : 0.4.2 Upstream Author : Torsten Seemann * URL : https://github.com/tseemann

Bug#1022942: xterm: cannot load font "-*-terminus-*-*-*-32-*-*-*-*-*-*-*"

2022-11-01 Thread Andreas Tille
Am Sun, Oct 30, 2022 at 04:53:24PM -0400 schrieb Thomas Dickey: > > > $ grep font /etc/X11/Xresources/xterm | grep -v ^! > > > *VT100.utf8Fonts.font: fixed > > > XTerm.VT100.font1: -*-terminus-*-*-*-16-*-*-*-*-*-*-* > > > XTerm.VT100.font2: -*-terminus-*-*-*-18-*-*-*-*-*-*-*

Bug#1023083: ITP: libquazip1-qt5 -- Qt/C++ wrapper over minizip - Version 1 (Qt5)

2022-10-30 Thread Andreas Tille
Am Sun, Oct 30, 2022 at 09:09:55AM +0530 schrieb Nilesh Patra: > > >>> I understand that, let's take it away from Debian Med and put it in > > >>> Debian at > > >>> large. Ben, if you would do the update, then I'd go over it and upload > > >>> it. That > > >>> would be very good. > > If you

Bug#986458: python-pangolearn_2022-02-02+dfsg-1_amd64.changes REJECTED

2022-10-28 Thread Andreas Tille
Hi Thorsten, Am Fri, Oct 28, 2022 at 06:00:09PM + schrieb Thorsten Alteholz: > according to FHS big data files should not be in /usr/lib. Please move them > somewhere else. Fixed in new upload. I might like to add that this package helps for COVID-19 investigation. Fast processing after a

Bug#949355: Removing simpleitk from Debian (Was: simpleitk FTBFS: test failures)

2022-10-28 Thread Andreas Tille
Hi Ghislain, I tried to upgrade simpleitk to latest upstream in Git but failed. IMHO only the latest upstream which is supposed to be compatible to ITK5 makes sense to support inside Debian. You are listed as Maintainer of the package. Do you think you are able to work on this package?

Bug#1013157: Asking for removal from Debian (Was: nifti2dicom: vtk[6,7] removal)

2022-10-28 Thread Andreas Tille
Hi, I've added to the upstream issue[1] that I will ask ftpmaster for removal from Debian if there is no visible sign that there is any interest to port the code to recent VTK. Just to let readers of Debian Med know that this package is about to be removed. Kind regards Andreas. [1]

Bug#1022942: xterm: cannot load font "-*-terminus-*-*-*-32-*-*-*-*-*-*-*"

2022-10-28 Thread Andreas Tille
Package: xterm Version: 375-1 Severity: important Hi, after upgrading from xterm 374-1 to 375-1 I get: $ xterm xterm: cannot load font "-*-terminus-*-*-*-32-*-*-*-*-*-*-*" Segmentation fault I guess this local setting is relevant: $ grep font /etc/X11/Xresources/xterm | grep -v ^!

Bug#1022282: staden-io-lib: FTBFS: ./data/9827_rand3.cram.fai: No such file or directory

2022-10-27 Thread Andreas Tille
Dear Bernhard, > A short term solution might be the patch in [7] which makes > the build and tests succeed without "implicit declarations". Thanks a lot for your explicit explanation and the helpful patch. I've just uploaded your patch Andreas. -- http://fam-tille.de

Bug#1022888: ITP: libomp-jonathonl -- parallel programming library

2022-10-27 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: libomp-jonathonl -- parallel programming library Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: libomp-jonathonl Version : 0.0+git20211216.5228495 Upstream Author : Jonathon LeFaive * URL : https

Bug#1022821: ITP: r-cran-sftime -- GNU R support for simple feature objects that have a time column

2022-10-26 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: r-cran-sftime -- GNU R support for simple feature objects that have a time column Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-sftime Version : 0.2 Upstream Author : Henning Teickner * URL

Bug#1013156: gdcm: vtk[6,7] removal

2022-10-26 Thread Andreas Tille
Hi Pierre, Am Wed, Oct 26, 2022 at 10:41:51AM +0200 schrieb Pierre Gruet: > > [1] https://salsa.debian.org/med-team/gdcm/-/jobs/3427720 > > This is really just a missing include dir, as the problematic header is in > /usr/lib/jvm/default-java/include/linux/ . I will be having a look shortly, >

Bug#1013156: gdcm: vtk[6,7] removal

2022-10-26 Thread Andreas Tille
Hi Mathieu, Am Wed, Oct 26, 2022 at 11:16:30AM +0200 schrieb Mathieu Malaterre: > > > https://salsa.debian.org/med-team/gdcm/-/commits/debian/experimental/ > > > > Ups, sorry for missing this. I've merged your changes into master but the > > said problem remains[1]. > > > > Kind regards > >

Bug#1013156: gdcm: vtk[6,7] removal

2022-10-26 Thread Andreas Tille
Hi Mathieu, Am Wed, Oct 26, 2022 at 08:10:42AM +0200 schrieb Mathieu Malaterre: > On Wed, Oct 26, 2022 at 7:53 AM Andreas Tille wrote: > > > > Hi, > > > > in the bug log there is some discussion to drop C# and Java VTK > > bindings. This would mean to

Bug#1013156: gdcm: vtk[6,7] removal

2022-10-25 Thread Andreas Tille
Hi, in the bug log there is some discussion to drop C# and Java VTK bindings. This would mean to drop the packages libvtkgdcm-cil and libvtkgdcm-java. I'm perfectly fine with this and I just pushed a change in d/control where I replaced s/vtk7/vtk9/ globally. The build[1] is currently failing

Bug#1018954: Can't open perl script "/usr/share/vtk9/doxygen//doc_header2doxygen.pl": No such file or directory

2022-10-25 Thread Andreas Tille
Hi, is there any chance to provide doc_header2doxygen.pl in VTK9 packages? Kind regards Andreas. -- http://fam-tille.de

Bug#1022307: python-biopython: FTBFS: mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory

2022-10-24 Thread Andreas Tille
Hi, I've recently upgraded t-coffee after a longish discussion with Hamid (in CC) who found out that t-coffee should switch off optimisation (which is also the case in the binaries provided upstream). Seems there are other issues with latest upstream. I wonder whether it might be the best "fix"

Bug#1011656: flexbar ftbfs: cannot find tbb header

2022-10-24 Thread Andreas Tille
Control: tags -1 help Control: tags -1 upstream Control: forwarded -1 https://github.com/seqan/flexbar/issues/38

Bug#994151: yt-dlp: little script

2022-10-23 Thread Andreas Tille
Am Sun, Oct 23, 2022 at 10:57:29PM -0400 schrieb Andres Salomon: > Thanks for the script! We still haven't seen a youtube-dl release and it's > pretty clear the way that things are headed, so I've gone ahead and prepared > the package for becoming replaced by yt-dlp: > >

Bug#1021303: btllib_1.4.9+dfsg-1_amd64.changes REJECTED

2022-10-16 Thread Andreas Tille
Hi Thorsten, Am Sun, Oct 16, 2022 at 06:00:10PM + schrieb Thorsten Alteholz: > as the license of this software is only GPL-3, please remove the term "or (at > your option) any later version. " from your debian/copyright. Fixed in new upload, thanks a lot for thorough checking Andreas.

Bug#1021788: ITP: savvy -- conversion tool for SAV file format

2022-10-14 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: savvy -- conversion tool for SAV file format Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: savvy Version : 2.1.0 Upstream Author : xx-20yy FIXME * URL : https://github.com/statgen/savvy * License

Bug#1021755: [ROM] racon: Please remove for 32 bit architectures (armel, armhf, i386, mipsel, hppa, m68k, powerpc, sh4, x32) (Was: Bug#1021755: racon: build-dependencies unsatisfiable on 32-bit.)

2022-10-14 Thread Andreas Tille
Control: retitle -1 [ROM] racon: Please remove for 32 bit architectures (armel, armhf, i386, mipsel, hppa, m68k, powerpc, sh4, x32) Control: reassign -1 ftp.debian.org Hi ftpmasters, we have to chose option 3 mentioned below - asking for removal of 32 bit architectures. Kind regards and thanks

Bug#1021764: RM: fis-gtm [i386] -- ROM; Does not work for 32bit architectures any more

2022-10-14 Thread Andreas Tille
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: amul.s...@fisglobal.com, debian-med-packag...@lists.alioth.debian.org Hi, as per upstream fis-gtm dropped support for i386. Thus please remove the package for i386 from Debian. Thank you for your work as ftpmaster Andreas.

Bug#1021394: src:libcereal: FTBFS on arm, ppc64le, s390x

2022-10-13 Thread Andreas Tille
Hi Scott, Am Thu, Oct 13, 2022 at 01:49:17PM -0400 schrieb Scott Talbert: > Merge request sent with patch: > https://salsa.debian.org/med-team/libcereal/-/merge_requests/1 Thanks a lot, uploaded by sponsoring the package as you to reward you for closing the bug. Kind regards Andreas. --

Bug#1021676: r-cran-leidenbase: autopkgtest failure on several architectures

2022-10-13 Thread Andreas Tille
Control: tags -1 upstream Control: forwarded -1 https://github.com/cole-trapnell-lab/leidenbase/issues/36 Hi Adrian, thanks a lot for this bug report Am Wed, Oct 12, 2022 at 09:59:05PM +0300 schrieb Adrian Bunk: > Source: r-cran-leidenbase > Version: 0.1.12-1 > Severity: serious > Control:

Bug#1015978: Fix reassigning address to get these packages finally removed

2022-10-12 Thread Andreas Tille
Control: reassign -1 ftp.debian.org Please remove falcon and r-cran-gprofiler

Bug#1021557: jellyfish: Performance regression in 2.3.0 (orders of magnitude for some inputs)

2022-10-11 Thread Andreas Tille
Control: tags -1 upstream Control: forwarded -1 https://github.com/gmarcais/Jellyfish/issues/192 Hi, thanks a lot for this bug report. Am Mon, Oct 10, 2022 at 01:20:09PM -0400 schrieb J Nisbet: > This issue has also been reported at the upstream GitHub page here: >

Bug#1021440: emboss: FTBFS on hppa - no java

2022-10-10 Thread Andreas Tille
Hi John, Am Sat, Oct 08, 2022 at 05:12:13PM + schrieb John David Anglin: > The emboss package does not currently build on hppa because of a lack > of java support. > > The attached patch adds support for the nojava profile and fixes building > on hppa except for the jemboss package which

Bug#1021542: unifrac: partially taken over by src:unifrac-tools

2022-10-10 Thread Andreas Tille
Control: tags -1 pending Control: block -1 by 1021378 Am Mon, Oct 10, 2022 at 02:15:38PM +0200 schrieb Andreas Beckmann: > > src:unifrac-tools (1.1.1-3) is now building libssu0 and libssu-dev as > well as a unifrac-tools binary package replacing libssu-tools. > libssu-tools has one reverse

Bug#1021303: btllib_1.4.9+dfsg-1_amd64.changes REJECTED

2022-10-10 Thread Andreas Tille
Hi Thorsten, Am Sun, Oct 09, 2022 at 06:08:57PM + schrieb Thorsten Alteholz: > according to meson.build and LICENSE, the license of this package is only > GPL-3. > According to LICENSE the only copyright holder is British Columbia Cancer > Agency Branch. Fixed in new upload, thanks for

Bug#1021400: RM: metaphlan2 -- ROM; Source package was renamed to metaphlan

2022-10-07 Thread Andreas Tille
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: debian-med-packag...@lists.alioth.debian.org Hi, as requested in bug #1016645 metaphlan2 was renamed to metaphlan (in source and binary package). Please remove metaphlan2 from unstable. Kind regards and thank you for your work as ftpmaster

Bug#1021394: src:libcereal: FTBFS on arm, ppc64le, s390x

2022-10-07 Thread Andreas Tille
Control: tags -1 help Control: tags -1 upstream Control: tags -1 forwarded https://github.com/USCiLab/cereal/issues/744 Am Fri, Oct 07, 2022 at 09:37:03AM -0400 schrieb Scott Talbert: > Justification: fails to build from source (but built successfully in the past) I guess it never has built in

Bug#1021378: ITP: python-iow -- balanced parentheses tree structure

2022-10-07 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: python-iow -- balanced parentheses tree structure Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: python-iow Version : 1.0.5 Upstream Author : Daniel McDonald * URL : https://github.com/biocore

Bug#1021377: ITP: libbitarray -- library for bit arrays

2022-10-07 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: libbitarray -- library for bit arrays Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: libbitarray Version : 2.0 Upstream Author : Isaac Turner * URL : https://github.com/noporpoise/BitArray

Bug#1021303: ITP: btllib -- Bioinformatics Technology Lab common code library

2022-10-05 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: btllib -- Bioinformatics Technology Lab common code library Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: btllib Version : 1.4.9 Upstream Author : Vladimir Nikolić, Parham Kazemi, Murathan Goktas, Lauren

Bug#1021284: unifrac-tools seems to be an unintentional hijack of src:unifrac

2022-10-05 Thread Andreas Tille
Hi Adrian, Am Wed, Oct 05, 2022 at 01:16:08AM +0300 schrieb Adrian Bunk: > Source: unifrac-tools > Version: 1.1.1-1 > Severity: serious > > unifrac-tools seems to be an unintentional hijack of src:unifrac, > which is also maintained by Debian Med and RFA (#996921). > > Package name differences:

Bug#944785: pufferfish wants to link with twopaco and ntcard

2022-10-04 Thread Andreas Tille
Hi Andrius, Am Tue, Oct 04, 2022 at 10:38:01AM +0300 schrieb Andrius Merkys: > On 2022-10-03 18:32, Andreas Tille wrote: > > My main motivation to start ntcard and twopaco packages was to avoid > > code duplication in pufferfish. I admit it seems I faild in doing this > &g

Bug#944785: pufferfish wants to link with twopaco and ntcard

2022-10-03 Thread Andreas Tille
Hi Andrius, Am Mon, Oct 03, 2022 at 10:19:41AM +0300 schrieb Andrius Merkys: > twopaco has entered testing (yay!), thus I gave its reverse dependency, > pufferfish (ITP bug #944785), a look. pufferfish carries embedded copies > of twopaco and ntcard with a modified build system to create static

Bug#1014797: FTBFS: test failures with new libgd3

2022-09-30 Thread Andreas Tille
Hi Olivier, Am Fri, Sep 30, 2022 at 10:49:38AM +0200 schrieb olivier sallou: > > I have a patch. With this patch, tests are ok, but I have no way to know if > it works as expected (don't know how to test it on real case) > Basically it removes gd2 format usage to use png, see patch below. But it

Bug#1012893: [Help] anfo: ftbfs with GCC-12

2022-09-29 Thread Andreas Tille
Am Thu, Sep 29, 2022 at 05:41:52PM -0400 schrieb Aaron M. Ucko: > Étienne Mollier writes: > > > I believe in the case of anfo, that warnings about auto_ptr / > > unique_ptr are red herrings. If I search for "error:"s, then I > > get some errors about no match for operator<: > > Oops, good

Bug#1014797: FTBFS: test failures with new libgd3

2022-09-29 Thread Andreas Tille
Am Fri, Sep 30, 2022 at 02:20:26AM +0200 schrieb olivier sallou: > Will try to have a look, but i have no perl knowledge and software is quite > old now... Alternatively we might consider removal. Kind regards Andreas. -- http://fam-tille.de

Bug#1014797: FTBFS: test failures with new libgd3

2022-09-29 Thread Andreas Tille
Control: tags -1 help Hi Aaron and Olivier, do you have some idea how to fix this bug? Kind regards Andreas. -- http://fam-tille.de

Bug#1012893: [Help] anfo: ftbfs with GCC-12

2022-09-29 Thread Andreas Tille
Hi Étienne, Am Thu, Sep 29, 2022 at 03:38:23PM +0200 schrieb Étienne Mollier: > I believe in the case of anfo, that warnings about auto_ptr / > unique_ptr are red herrings. If I search for "error:"s, then I > get some errors about no match for operator<: > > In file included from

Bug#1020959: RM: jellyfish1 [alpha armel armhf i386 s390x x32 sparc64 ppc64] -- ROM; architectures are restricted to 64bit - please remove 32bit binary packages

2022-09-29 Thread Andreas Tille
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: debian-med-packag...@lists.alioth.debian.org Hi, in the last upload (jellyfish1 1.1.11-8) all 32bit architectures as well as some 64 bit architectures that are known to fail to build for other reasons were excluded from the list of

Bug#1020956: RM: spaln [armel armhf i386 mipsel hppa hurd-i386 m68k powerpc sh4 x32] -- ROM; Does not build on 32bit architectures any more

2022-09-29 Thread Andreas Tille
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: debian-med-packag...@lists.alioth.debian.org Hi, the new version of spaln builds on 64bit only (and is only used in practice on these architectures). To enable smooth testing migration please remove the package from the architectures

Bug#1020954: RM: nheko [mipsel] -- ROM; Build-Depends missing for mipsel in new upstream version

2022-09-29 Thread Andreas Tille
Package: ftp.debian.org Severity: normal Hi, as can be seen on the autobuilders page[1] there is a missing Build-Depends for mipsel. To make sure the package will migrate to testing please remove the package of the old version. Thanks a lot for your ftpmaster work Andreas. [1]

Bug#1012893: [Help] anfo: ftbfs with GCC-12

2022-09-29 Thread Andreas Tille
Hi Aaron, Am Wed, Sep 28, 2022 at 04:06:23PM -0400 schrieb Aaron M. Ucko: > > Per GCC's hint, please try formally substituting unique_ptr for > auto_ptr. I haven't tested that approach for this package, but it's > typically a safe drop-in replacement, and generally yields compilation > errors

Bug#1017752: Do you see any chance to fix the "virtual memory exhausted" for nheko on mipsel VM

2022-09-28 Thread Andreas Tille
Hi mips porters, in bug #1017752 a FTBFS on mipsel: virtual memory exhausted: Cannot allocate memory is reported. This remains for the new upstream version I've just uploaded to experimental[1]. Do you see any chance to fix the memory constraint for the autobuilder VM? If not I'll remove

Bug#1012893: [Help] anfo: ftbfs with GCC-12

2022-09-28 Thread Andreas Tille
Control: tags -1 help Could anybody have a look at this gcc failure? Thanks in advance Andreas. -- http://fam-tille.de

Bug#1017752: nheko: FTBFS on mipsel: virtual memory exhausted: Cannot allocate memory

2022-09-28 Thread Andreas Tille
Control: tags -1 moreinfo Hi, I wonder whether this should really tagged RC. If the virtual memory on some mipsel machine is exhaustet shouldn't be someone investigate into that specific machine? Kind regards Andreas. -- http://fam-tille.de

Bug#1017195: Possibly false positive: schedule: FTBFS: AssertionError: ScheduleValueError not raised by until

2022-09-28 Thread Andreas Tille
Control: tags -1 moreinfo Control: severity -1 normal Hi, I've checked the build in my local pbuilder environment which was running successfully and also enabled Salsa CI to have another public instance for the build. This builds successfully as well.[1] So I guess this bug was either a false

Bug#1019695: r-cran-qpdf: FTBFS with qpdf 11.0.0

2022-09-27 Thread Andreas Tille
Control: tags -1 upstream Control: forwarded -1 https://github.com/ropensci/qpdf/issues/20

Bug#1020035: seqan3: FTBFS: char_traits.h:431:56: error: ‘void* __builtin_memcpy(void*, const void*, long unsigned int) ’ accessing 9223372036854775810 or more bytes at offsets 4 and 3 may overlap up

2022-09-27 Thread Andreas Tille
Control: tags -1 upstream, help Control: forwarded -1 https://github.com/seqan/seqan3/issues/3054

Bug#1020501: ITP: libshrinkwrap -- XZ streambuf with std::istream

2022-09-22 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: libshrinkwrap -- XZ streambuf with std::istream Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: libshrinkwrap Version : 1.2.0 Upstream Author : Jonathon LeFaive * URL : https://github.com/jonathonl

Bug#1020491: ITP: ska -- Split Kmer Analysis

2022-09-22 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: ska -- Split Kmer Analysis Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: ska Version : 1.0 Upstream Author : Simon Harris (Wellcome Sanger Institute) * URL : https://github.com/simonrharris/SKA

Bug#1020049: [notificati...@github.com: Re: [hhoeflin/hdf5r] datatype_export.c:1903:19: error: storage size of ‘myenum’ isn’t known (Issue #192)]

2022-09-22 Thread Andreas Tille
Control: tags -1 help - Weitergeleitete Nachricht von Holger Hoefling - Date: Wed, 21 Sep 2022 23:17:30 -0700 From: Holger Hoefling To: hhoeflin/hdf5r Cc: Andreas Tille , Author Subject: Re: [hhoeflin/hdf5r] datatype_export.c:1903:19: error: storage size of ‘myenum’ isn’t known

Bug#1020049: r-cran-hdf5r: FTBFS: datatype_export.c:1903:19: error: storage size of ‘myenum’ isn’t known

2022-09-21 Thread Andreas Tille
Control: tags -1 upstream Control: forwarded -1 https://github.com/hhoeflin/hdf5r/issues/192 Am Sun, Sep 18, 2022 at 08:21:55AM +0200 schrieb Lucas Nussbaum: > > gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial > > -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 > >

Bug#1017966: lintian: Systematic false positives for source-is-missing in r-cran-* documentation

2022-09-19 Thread Andreas Tille
Am Sun, Sep 18, 2022 at 12:26:20AM +0100 schrieb Colin Watson: > On Tue, Aug 23, 2022 at 08:23:43AM +0200, Andreas Tille wrote: > > lintian is doing a check for overlong lines to guess for included > > JavaScript in html pages (and may be more). I now realised that several

Bug#1019811: treeviewx: Please transition to wxwidgets3.2

2022-09-15 Thread Andreas Tille
Control: tags -1 help Am Wed, Sep 14, 2022 at 03:42:14PM -0400 schrieb s...@techie.net: > Please transition gentle from wxwidgets3.0 to wxwidgets3.2. I would like to support this but I have no idea about wxwidgets. > For most packages, the transition should be as simple as changing >

Bug#1019764: ctsim: Please transition to wxwidgets3.2

2022-09-15 Thread Andreas Tille
Control: tags -1 help Am Wed, Sep 14, 2022 at 03:42:14PM -0400 schrieb s...@techie.net: > Please transition gentle from wxwidgets3.0 to wxwidgets3.2. I would like to support this but I have no idea about wxwidgets. > For most packages, the transition should be as simple as changing >

Bug#1019809: gentle: Please transition to wxwidgets3.2

2022-09-15 Thread Andreas Tille
I forgot to mention the salsa CI link where you can find the compile issues: https://salsa.debian.org/med-team/gentle/-/jobs/3238666 Am Thu, Sep 15, 2022 at 09:18:39PM +0200 schrieb Andreas Tille: > Control: tags -1 help > > Am Wed, Sep 14, 2022 at 03:42:14PM -0400 schrieb s...@t

Bug#1019809: gentle: Please transition to wxwidgets3.2

2022-09-15 Thread Andreas Tille
Control: tags -1 help Am Wed, Sep 14, 2022 at 03:42:14PM -0400 schrieb s...@techie.net: > Please transition gentle from wxwidgets3.0 to wxwidgets3.2. I would like to support this but I have no idea about wxwidgets. > For most packages, the transition should be as simple as changing >

Bug#1019882: ITP: r-cran-optimparallel -- parallel version of the L-BFGS-B optimization method

2022-09-15 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: r-cran-optimparallel -- parallel version of the L-BFGS-B optimization method Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-optimparallel Version : 1.0 Upstream Author : Florian Gerber * URL

Bug#1017966: lintian: Systematic false positives for source-is-missing in r-cran-* documentation

2022-09-14 Thread Andreas Tille
Hi, another remark about the source-is-missing tag in r-* packages: For r-cran-dplyr I've just added lintian-overrides[1] for other false positives than embedded png files. The "source-is-missing" tag is in cases of R documentation not sensible in general since the source can always be found in

Bug#1019507: ITP: libquazip1-qt6 -- Qt/C++ wrapper over minizip - Version 1 (Qt6)

2022-09-12 Thread Andreas Tille
Hi, Am Mon, Sep 12, 2022 at 08:08:40PM +0200 schrieb Filippo Rusconi: > > Thank you for the offer, but the package was just sponsored yesterday by > > Adam Borowski (kilobyte) and is in the NEW queue. If you're interested > > in QuaZip for Qt5, I could package that for you to review. > > Well,

Bug#991859: Please clarify the intented license of example file in basilisk

2022-08-23 Thread Andreas Tille
Hi Aaron, the Debian R packaging team intends to package basilisk for Debian. In Debian the ftpmaster team has the role to verify licenses and copyright of new software. The team member who was checking my upload considers the files in inst/example/inst/test_dummy as differently licensed

Bug#1017966: lintian: Systematic false positives for source-is-missing in r-cran-* documentation

2022-08-23 Thread Andreas Tille
Package: lintian Version: 2.115.2 Severity: normal X-Debbugs-Cc: debia...@lists.debian.org Hi lintian maintainers, lintian is doing a check for overlong lines to guess for included JavaScript in html pages (and may be more). I now realised that several R packages are including img

Bug#1003165: Set severity to important

2022-08-22 Thread Andreas Tille
Control: severity -1 important Hi, as discussed on Debian Science the affected test suite errors are ignored for the moment so the package does not FTBFS any more and thus the bug is not serious any more. Since issues are remaining the bugs are not closed yet. Kind regards Andreas. --

Bug#1016417: pypi2deb: Claims "source package not available on PyPI"

2022-08-21 Thread Andreas Tille
Am Sun, Aug 21, 2022 at 01:45:21AM -0400 schrieb Sandro Tosi: > > that's actually correct: https://pypi.org/project/tusclient/#files > only lists a wheel package and not a source one. either contact > upstream and ask them to upload a source package too, or use ask > upstream to release via

Bug#1008369: Reduce severity from serious to important

2022-08-15 Thread Andreas Tille
Control: severity -1 important Hi, as discussed on Debian Science the affected test suite errors are ignored for the moment so the package does not FTBFS any more and thus the bug is not serious any more. Since issues are remaining the bugs are not closed yet. Kind regards Andreas. --

Bug#1017383: ITP: r-cran-estimatr -- GNU R fast estimators for design-based inference

2022-08-15 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: r-cran-estimatr -- GNU R fast estimators for design-based inference Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-estimatr Version : 1.0.0 Upstream Author : Graeme Blair, * URL : https

Bug#1017376: ITP: r-cran-dendsort -- GNU R Modular Leaf Ordering Methods for Dendrogram Nodes

2022-08-15 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: r-cran-dendsort -- GNU R Modular Leaf Ordering Methods for Dendrogram Nodes Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-dendsort Version : 0.3.4 Upstream Author : Ryo Sakai, * URL

Bug#1003165: scikit-learn testing migration

2022-08-13 Thread Andreas Tille
Hi again, Am Thu, Aug 04, 2022 at 01:25:42PM +0200 schrieb Andreas Tille: > Am Fri, Jul 29, 2022 at 06:09:26AM +0200 schrieb Andreas Tille: > Before we fall into another "do nothing" period: I will upload > scikit-learn restricted to those architectures only which have

Bug#1012219: Please adjust StanHeaders to new version of (one)tbb

2022-08-12 Thread Andreas Tille
Ping? Is there any place where I can open an issue about this? I've found https://github.com/cran/StanHeaders but this is readonly and has no option to report issues. Kind regards Andreas. Am Mon, Jul 18, 2022 at 10:45:14AM +0200 schrieb Andreas Tille: > Control: tags -1 upstr

Bug#1017059: RM: dicompyler -- ROM; Orphaned upstream, not compatible with recent matplotlib

2022-08-12 Thread Andreas Tille
Package: ftp.debian.org Severity: normal X-Debbugs-Cc: debian-...@lists.debian.org Hi, bug #985891 was forwarded upstream[1] but there is no sensible solution to get it working with recent matplotlib. It does not sound sensible to package a Python module that brings back legacy stuff just to

Bug#1017003: ITP: r-cran-poorman -- Üoor Man's sependency free recreation of 'dplyr' GNU R package

2022-08-11 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: r-cran-poorman -- Üoor Man's sependency free recreation of 'dplyr' GNU R package Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-cran-poorman Version : 0.2.5 Upstream Author : Nathan Eastwood * URL

Bug#1015978: ROM: Please remove falcon (Was: Bug#1015978: Should falcon be removed?)

2022-08-05 Thread Andreas Tille
Control: reassign -1 ftpmaster.debian.org See below, please remove falcon since it is unmaintainable. Thanks for working as ftpmaster Andreas. Am Fri, Aug 05, 2022 at 09:57:26AM +0200 schrieb Moritz Mühlenhoff: > Am Fri, Aug 05, 2022 at 09:36:00AM +0200 schrieb Andreas Tille: > >

Bug#1015978: Should falcon be removed?

2022-08-05 Thread Andreas Tille
Hi Moritz, Am Fri, Jul 29, 2022 at 04:42:00PM +0200 schrieb Moritz Mühlenhoff: > Am Sun, Jul 24, 2022 at 10:06:03PM +0200 schrieb Andreas Tille: > > Unfortunately the package does not build[1] which is probably a gcc > > issue. If someone would volunteer to fix this issue w

Bug#1016645: metaphlan2: package name and description can become confusing

2022-08-04 Thread Andreas Tille
Control: tags -1 pending Hi Patrice, Am Thu, Aug 04, 2022 at 04:12:39PM +0200 schrieb Patrice Duroux: > The current package version is already 3.0.14 and the package description is > citing 2.0 in two places but the following one may become strange by the > time, isn't it? Thanks for the hint

Bug#1016346: [Help] LaTeX error due to encoding issues (Was: Bug#1016346: pycorrfit: FTBFS: make[1]: *** [debian/rules:46: override_dh_auto_build] Error 1)

2022-08-04 Thread Andreas Tille
Control: tags -1 help Hi, Am Fri, Jul 29, 2022 at 08:41:23PM +0200 schrieb Lucas Nussbaum: > > (/usr/share/texlive/texmf-dist/tex/latex/ucs/data/uni-0.def) > > No file PyCorrFit_doc.toc. > > ! Argument of ? has an extra }. > > > > \par > > l.144 \newpage I was able to

Bug#1012691: Bug#1013157: nifti2dicom: vtk[6,7] removal

2022-08-04 Thread Andreas Tille
Control: tags -1 upstream Control: forwarded -1 https://github.com/biolab-unige/nifti2dicom/issues/36

Bug#1003165: scikit-learn testing migration

2022-08-04 Thread Andreas Tille
Hi again, Am Fri, Jul 29, 2022 at 06:09:26AM +0200 schrieb Andreas Tille: > I just like to repeat my point: If the package is to slow on release > architectures, that we will not manage to fix it, it is in the interest > of our users to not support the problematic architectures

Bug#1016635: libconfig-model-dpkg-perl: Missing build profile nocil

2022-08-04 Thread Andreas Tille
Package: libconfig-model-dpkg-perl Version: 2.162 Severity: normal Hi, please try apt source gdcm cd gdcm-3.0.13 cme fix dpkg-control Paketlisten werden gelesen… Fertig Abhängigkeitsbaum wird aufgebaut… Fertig Statusinformationen werden eingelesen… Fertig Connecting to

Bug#1016577: ITP: python-tuspy -- Python3 client for the tus resumable upload protocol

2022-08-03 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: python-tuspy -- Python3 client for the tus resumable upload protocol Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: python-tuspy Version : 1.0.0 Upstream Author : Ifedapo .A. Olarewaju * URL

Bug#991859: Is a different opinion about a license a case for the ctte?

2022-08-02 Thread Andreas Tille
Hi folks, before I follow the advise how to refer a question to the CTTE[1] I'm wondering whether licensing questions are also a topic here. I admit I'm a bit unsure whether this minor issue about a license is really worth that even more people spent time into it. I'm demotivated myself by no

Bug#1015897: gobby: Gobby is crashing right after calling it

2022-08-01 Thread Andreas Tille
Hi Philipp, Am Sun, Jul 31, 2022 at 06:12:55PM +0200 schrieb Philipp Kern: > > It existed - but if I remove it no such dir is create newly. > > And how about ~/.infinote-records and your homedir? That dir existed in my homedir from former DebConfs when gobby worked. If I rename it now and try

Bug#1015742: libspdlog1: ABI breakage without SONAME bump

2022-08-01 Thread Andreas Tille
Hi, Am Tue, Aug 02, 2022 at 01:38:58AM +0800 schrieb Shengjing Zhu: > To fix the ABI breakage in spdlog/1.10, I request the fmt/9 transition > afterwards. > Since with fmt/9 translation, spdlog ABI will bump to > libspdlog1-fmt9(from libspdlog1-fmt8) anyway. A, OK, I missed that point. Feel

Bug#1015904: r-cran-profvis_0.3.7+dfsg-1_amd64.changes REJECTED

2022-07-31 Thread Andreas Tille
Hi Thorsten, Am Sat, Jul 30, 2022 at 07:06:38PM + schrieb Thorsten Alteholz: > please also mention profvis/inst/htmlwidgets/lib/profvis/scroll.js in your > debian/copyright. Fixed in new upload. Thanks a lot for thorough checking Andreas. -- http://fam-tille.de

Bug#1015904: r-cran-urlchecker_1.0.1-1_amd64.changes REJECTED

2022-07-31 Thread Andreas Tille
Hi Thorsten, Am Sat, Jul 30, 2022 at 07:06:38PM + schrieb Thorsten Alteholz: > please also mention the GPL-2 of urlchecker/inst/tools/urltools.R in your > debian/copyright. I've added an extra paragraph to d/copyright. However, IMHO there is no real point for a reject here since the "or

Bug#970060: r-cran-pkgdown_2.0.6-1_amd64.changes REJECTED

2022-07-31 Thread Andreas Tille
Hi Thorsten, Am Sat, Jul 30, 2022 at 06:00:08PM + schrieb Thorsten Alteholz: > please also mention at least Aidan Feldman in your debian/copyright. Fixed in new upload - thanks for checking Andreas. -- http://fam-tille.de

Bug#1015742: Reverted droping symbols

2022-07-31 Thread Andreas Tille
Hi Boyuan Yang, I admit symbols files are a maintenance burden for C++ libraries. However, it helps to spot ABI changes for new upstream versions. To reduce the maintenance burden while keeping that ABI change detection functionality I frequently maintain amd64 symbols only. Motivated by this

Bug#1016417: pypi2deb: Claims "source package not available on PyPI"

2022-07-31 Thread Andreas Tille
Package: pypi2deb Version: 3.20220723 Severity: important Hi, $ py2dsp -v tusclient D: py2dsp py2dsp:156: version: 3.20220707 D: py2dsp py2dsp:157: ['/usr/bin/py2dsp', '-v', 'tusclient'] /usr/bin/py2dsp:163: DeprecationWarning: There is no current event loop loop = asyncio.get_event_loop() D:

Bug#1008220: flexbar 3.5.0-4 FTBFS against libtbb-dev 2021.5.0-7

2022-07-29 Thread Andreas Tille
Control: tags -1 upstream Control: forwarded -1 https://github.com/seqan/flexbar/issues/38

Bug#1003165: scikit-learn testing migration

2022-07-28 Thread Andreas Tille
Am Thu, Jul 28, 2022 at 08:15:45PM -0700 schrieb M. Zhou: > I have a long-term power 9 VM (not QEMU) as testbed. > I'm trying to investigate the issues for release architectures, > but this package is too slow to build with QEMU (multiple hours). > (abel.debian.org is also extremely slow for

Bug#1015062: node-shiny-server: FTBFS: ModuleNotFoundError: No module named 'six'

2022-07-28 Thread Andreas Tille
Control: tags -1 moreinfo Control: tags -1 unreproducible Control: severity -1 important Hi Lucas, I can't reproduce the issue at my side. It somehow smells like an issue of some Build-Depends which might have been solved meanwhile. Kind regards Andreas. Am Sat, Jul 16, 2022 at 03:31:35PM

Bug#1015861: bamtools: FTBFS with upcoming doxygen 1.9.4

2022-07-28 Thread Andreas Tille
Control: tags -1 pending This is fixed in Git. Unfortunately the new version is in NEW since 4 months and I do not want to fiddle around with this package. A fix will be uploaded with source-only upload once the package is finally accepted. Kind regards Andreas. --

Bug#1014568: spdlog: FTBFS with fmtlib 9.0.0

2022-07-28 Thread Andreas Tille
Hi, Am Thu, Jul 28, 2022 at 12:53:46PM +0800 schrieb Shengjing Zhu: > > I intend to upload spdlog 1.10.0 to unstable in next few days. > Please let me know if you have objections. No objections from the salmon side. The package as several issues unfortunately and should not stop progress.

Bug#1016160: ITP: unifrac-tools -- high-performance phylogenetic diversity calculations (binaries)

2022-07-28 Thread Andreas Tille
Package: wnpp Severity: wishlist Subject: ITP: unifrac-tools -- high-performance phylogenetic diversity calculations (binaries) Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: unifrac-tools Version : 1.1.1 Upstream Author : UniFrac development team. * URL

Bug#1003165: scikit-learn testing migration

2022-07-28 Thread Andreas Tille
Hi Graham, Am Thu, Jul 28, 2022 at 09:15:06AM +0200 schrieb Graham Inggs: > Hi > > On Wed, 27 Jul 2022 at 17:57, M. Zhou wrote: > > The previous segfault on armel becomes Bus Error on armel and armhf. > > I can build it on Power9, but it seems that the test fails on power8 (our > > buildd). >

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