It seems that, for me anyway, this problem may have been caused by an
incorrectly compiled Nvidia Proprietary Driver (which HAS to be used due to
my particular hardware). I haven't had any of these dconf permission errors
since recompiling.
(I haven't chimed-in here at bugs.debian before but I would like to help
out with this bug)
I tried workaround in message #15 and then made sure my echo
$XDG_RUNTIME_DIR variable was correctly set to /run/user/1000. I then
proceeded to open my editing programmes with gksu.
gksu nautilus resulted
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