Bug#846353: FTBFS: ERROR: Test "ruby2.3" failed. Exiting.

2016-12-02 Thread Gilles Filippini
Sebastiaan Couwenberg a écrit le 02/12/2016 à 15:34 : > On 12/02/2016 09:55 AM, Sebastiaan Couwenberg wrote: >> On 12/01/2016 07:48 PM, Sebastiaan Couwenberg wrote: >>> On Wed, 30 Nov 2016 15:10:03 + Iain Lane wrote: This package FTBFS on 32 bit arches (works on amd64 and other 64 bit

Bug#842817: fixed in yorick-hdf5 0.8.0-7

2016-12-02 Thread Gilles Filippini
ian FTP archive. [cut] > Closes: 842817 > Changes: > yorick-hdf5 (0.8.0-7) experimental; urgency=medium > . >* Bug fix: "FTBFS against HDF5 v1.10", thanks to Gilles Filippini > (Closes: #842817). >* Check against Policy 3.9.8. Could you upload this fix to

Bug#846541: h5py: FTBFS against hdf5 1.10 - Fail to detect HDF5 install dir

2016-12-01 Thread Gilles Filippini
Source: h5py Version: 2.6.0-1 Severity: serious Justification: FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, h5py FTBFS against hdf5-1.10 with: == ERROR: test_force_swmr_mode_off_raises

Bug#842177: transition: hdf5

2016-12-01 Thread Gilles Filippini
Gilles Filippini a écrit le 28/11/2016 à 10:05 : > Emilio Pozuelo Monfort a écrit le 27/11/2016 à 23:52 : >> On 27/11/16 23:21, Gilles Filippini wrote: >>> Hi, >>> >>> Emilio Pozuelo Monfort a écrit le 06/11/2016 à 16:20 : >>>>>> Yes, this is

Bug#846196: RM: sikuli -- ROM; replaced by sikulix

2016-11-29 Thread Gilles Filippini
Package: ftp.debian.org Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The sikuli source package is supeseded by sikulix which has now landed into unstable. Thanks, _g. -BEGIN PGP SIGNATURE- iQEcBAEBCAAGBQJYPUhlAAoJEO/obGx//s+DVl8H/2RJxYXtFyhwYUFH3VdSJPHn

Bug#842177: transition: hdf5

2016-11-28 Thread Gilles Filippini
Emilio Pozuelo Monfort a écrit le 27/11/2016 à 23:52 : > On 27/11/16 23:21, Gilles Filippini wrote: >> Hi, >> >> Emilio Pozuelo Monfort a écrit le 06/11/2016 à 16:20 : >>>>> Yes, this is looking very good, so I'm acking it. But please don't upload >&g

Bug#842177: transition: hdf5

2016-11-27 Thread Gilles Filippini
Hi, Emilio Pozuelo Monfort a écrit le 06/11/2016 à 16:20 : >>> Yes, this is looking very good, so I'm acking it. But please don't upload >>> just >>> yet, I'll give you the go in a few days when things are a bit calmer (there >>> are >>> just too many transitions at the moment). Any news on

Bug#845270: jython: /usr/bin/jython sets broken python.home property

2016-11-22 Thread Gilles Filippini
On Tue, 22 Nov 2016 00:03:48 +0100 Gilles Filippini <p...@debian.org> wrote: > Package: jython > Version: 2.5.3-11 > Severity: normal > > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA256 > > Hi, > > /usr/bin/jython should set python.home = '/usr/share/jython

Bug#845360: jython: the default cachedir path should be set at the library intialization step

2016-11-22 Thread Gilles Filippini
) unstable; urgency=medium + + * Non-maintainer upload. + * New patch 03-default-cachedir.patch: the Debian default cachedir +path is now set at the library intialization step, so that it works +for every use case + + -- Gilles Filippini <p...@debian.org> Tue, 22 Nov 2016 00:34:43

Bug#845270: jython: /usr/bin/jython sets broken python.home property

2016-11-21 Thread Gilles Filippini
Package: jython Version: 2.5.3-11 Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, /usr/bin/jython should set python.home = '/usr/share/jython', but it uses dirname(dirname($0)) instead, which returns '/usr'. This setting comes from #705146, to support virtualenv. But it

Bug#844760: fastqc: Please temporarily drop support for fast5 files

2016-11-18 Thread Gilles Filippini
(#842815). +fast5 files can easily be converted to fastq using poretools. + + -- Gilles Filippini <p...@debian.org> Fri, 18 Nov 2016 19:03:15 +0100 + fastqc (0.11.5+dfsg-4) unstable; urgency=low * Team upload. diff --git a/debian/control b/debian/control index 7fa5f02..9cd7223

Bug#842815: closed by Andreas Tille <ti...@debian.org> (Bug#842815: fixed in libsis-jhdf5-java 14.12.6-1)

2016-11-14 Thread Gilles Filippini
On Mon, 14 Nov 2016 22:15:18 +0100 Gilles Filippini <p...@debian.org> wrote: > Control: reopen -1 > > Andreas Tille a écrit le 14/11/2016 à 21:15 : > > Hi Gilles, > > > > On Mon, Nov 14, 2016 at 07:32:04PM +0100, Gilles Filippini wrote: > >> Debian Bug

Bug#842815: closed by Andreas Tille <ti...@debian.org> (Bug#842815: fixed in libsis-jhdf5-java 14.12.6-1)

2016-11-14 Thread Gilles Filippini
Control: reopen -1 Andreas Tille a écrit le 14/11/2016 à 21:15 : > Hi Gilles, > > On Mon, Nov 14, 2016 at 07:32:04PM +0100, Gilles Filippini wrote: >> Debian Bug Tracking System a écrit le 14/11/2016 à 16:09 : >>> This is an automatic notification regarding your Bug re

Bug#842815: closed by Andreas Tille <ti...@debian.org> (Bug#842815: fixed in libsis-jhdf5-java 14.12.6-1)

2016-11-14 Thread Gilles Filippini
Debian Bug Tracking System a écrit le 14/11/2016 à 16:09 : > This is an automatic notification regarding your Bug report > which was filed against the src:libsis-jhdf5-java package: > > #842815: libsis-jhdf5-java: Please support HDF5 1.10 > > It has been closed by Andreas Tille

Bug#843040: c-blosc: diff for NMU version 1.11.1+ds1-2.1

2016-11-06 Thread Gilles Filippini
bigendian.patch: fix endianness issue in the bitshuffle +filter (closes: #8430040) + + -- Gilles Filippini <p...@debian.org> Fri, 04 Nov 2016 11:19:43 +0100 + c-blosc (1.11.1+ds1-2) unstable; urgency=medium * add preserve-cflags-from-environment.patch. diff -Nru c-blosc-1.11.1+ds1/

Bug#833457: hdf5: Please enable packaging of libhdf5-openmpi-dev on hppa arch

2016-11-05 Thread Gilles Filippini
Control: tags -1 confirmed On Thu, 4 Aug 2016 17:33:58 +0200 Helge Deller wrote: > Package: hdf5 > Version: 1.8.16+docs-8 > Severity: normal > > Can you please re-enable hppa as arch which builds libhdf5-openmpi-dev ? > It breaks building other packages, and openmpi now builds on

Bug#842177: transition: hdf5

2016-11-05 Thread Gilles Filippini
Control: block -1 by 843040 842815 Emilio Pozuelo Monfort a écrit le 05/11/2016 à 17:29 : > Control: tags -1 confirmed > > On 04/11/16 14:45, Gilles Filippini wrote: >> Gilles Filippini a écrit le 02/11/2016 à 19:05 : >>> Hi, >>> >>> Good news: every hd

Bug#841959: Problems with your ismrmrd/1.3.2-4.1 NMU

2016-11-04 Thread Gilles Filippini
On 2016-11-04 15:50, Ghislain Vaillant wrote: Hi Gilles, On 01/11/16 17:50, Gilles Filippini wrote: Could you give me more insight of the compatibility problem with HDF5 1.10? The most important change in the HDF5 1.10 release is that the hid_t type was changed from 'int' to 'long long' [1

Bug#842177: transition: hdf5

2016-11-04 Thread Gilles Filippini
Gilles Filippini a écrit le 02/11/2016 à 19:05 : > Hi, > > Good news: every hdf5 reverse dependency but 8 is now 'binnmu OK'. The > remainder is: > * shogun FTBFS unrelated to hdf5 - not in testing - #809290 > * tessa FTBFS unrelated to hdf5 - not in

Bug#843040: libblosc1: Bitshuffle problems on bigendian architectures

2016-11-04 Thread Gilles Filippini
+0100 @@ -1,3 +1,11 @@ +c-blosc (1.11.1+ds1-2.1) unstable; urgency=medium + + * Non-maintainer upload + * New patch bigendian.patch: fix endianness issue in the bitshuffle +filter (closes: #8430040) + + -- Gilles Filippini <p...@debian.org> Fri, 04 Nov 2016 11:19:43 +0100 + c-blosc (1.11

Bug#842177: transition: hdf5

2016-11-02 Thread Gilles Filippini
Hi, Good news: every hdf5 reverse dependency but 8 is now 'binnmu OK'. The remainder is: * shogun FTBFS unrelated to hdf5 - not in testing - #809290 * tessa FTBFS unrelated to hdf5 - not in testing - #817690 * aster FTBFS unrelated to hdf5 - not in testing

Bug#842817: yorick-hdf5: FTBFS against HDF5 v1.10

2016-11-02 Thread Gilles Filippini
On 2016-11-02 13:46, Thibaut Paumard wrote: Le 02/11/2016 à 10:30, Gilles Filippini a écrit : Yes, this plan (quick hack + temporarily disabling tests on other archs) sounds sensible. Dear Gilles, I uploaded the hacked version(0.8.0-6) to experimental (build-depending on hdf5-dev 1.10

Bug#842817: yorick-hdf5: FTBFS against HDF5 v1.10

2016-11-02 Thread Gilles Filippini
Hi Thibaut, On 2016-11-02 09:04, Thibaut Paumard wrote: The "long" type is 64-bit on 64-bit arches. My quick hack works only on these. The proper fix is more involving: I have to create a custom, opaque data type that will hold the actual hid_t. However, overloading the comparison operator for

Bug#842817: yorick-hdf5: FTBFS against HDF5 v1.10

2016-11-01 Thread Gilles Filippini
ow-up. I'm curious how you fix it, because as I understand it, yorick doesn't support 64 bits integers o_O Regards, _g. > > Regards, Thibaut. > > Le 01/11/2016 à 14:16, Gilles Filippini a écrit : >> Source: yorick-hdf5 >> Version: 0.8.0-5 >> Severity: important >

Bug#842881: libmpich12: extraneous - and possibly wrong - symbolic link: /usr/lib/libmpich.so.12 -> libmpi.so

2016-11-01 Thread Gilles Filippini
Package: libmpich12 Version: 3.2-7 Severity: serious Justification: make other packages FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, I've just experienced a weird FTBFS on hdf5 on my box, caused by an extraneous symlink: /usr/lib/libmpich.so.12 -> libmpi.so Steps to reproduce: 1-

Bug#841959: Problems with your ismrmrd/1.3.2-4.1 NMU

2016-11-01 Thread Gilles Filippini
Hi Ghislain, Ghislain Vaillant a écrit le 01/11/2016 à 17:13 : > Thanks for dealing with the HDF 1.10 compatibility for ismrmrd whilst I > was away. I did not have the opportunity to look at your patch before > your submission today. That's unfortunate, as there are a couple of > problems with

Bug#842817: yorick-hdf5: FTBFS against HDF5 v1.10

2016-11-01 Thread Gilles Filippini
Source: yorick-hdf5 Version: 0.8.0-5 Severity: important -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, yorick-hdf5 FTBFS againt HDF5 v1.10 currently in experimental: dh_auto_test make -j1 check make[1]: Entering directory '/<>' /usr/lib/yorick/bin/yorick -batch check.i

Bug#842815: libsis-jhdf5-java: Please support HDF5 1.10

2016-11-01 Thread Gilles Filippini
Source: libsis-jhdf5-java Version: 14.12.1-2 Severity: important -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, libsis-jhdf5-java FTBFS against hdf5-1.10 currently in experimental: === All Total tests run: 309, Failures: 279, Skips: 6

Bug#842177: transition: hdf5

2016-10-29 Thread Gilles Filippini
On 2016-10-28 14:12, Gilles Filippini wrote: Status update: insighttoolkit4: hdf5 libmincpatch provided via #842342 And: ants: hdf5 insighttoolkit4OK There is only pytables remaining on the way now Thanks, _g.

Bug#842177: transition: hdf5

2016-10-28 Thread Gilles Filippini
On 2016-10-26 19:12, Gilles Filippini wrote: On 2016-10-26 19:03, Sebastiaan Couwenberg wrote: On 10/26/2016 06:46 PM, Gilles Filippini wrote: I've checked the build of every reverse dependencies. These few ones are of concern: * libsis-jhdf5-java : unmaintained upstream - low popcon

Bug#842342: insighttoolkit4: Pease support building against HDF5 1.10

2016-10-28 Thread Gilles Filippini
(4.10.1-dfsg1-1.1) unstable; urgency=medium + + * Non-maintainer upload + * New patch to support HDF5 1.10 + + -- Gilles Filippini <p...@debian.org> Fri, 28 Oct 2016 10:12:49 +0200 + insighttoolkit4 (4.10.1-dfsg1-1) unstable; urgency=medium * New upstream version diff -Nru insightto

Bug#842177: transition: hdf5

2016-10-26 Thread Gilles Filippini
On 2016-10-26 19:03, Sebastiaan Couwenberg wrote: On 10/26/2016 06:46 PM, Gilles Filippini wrote: I've checked the build of every reverse dependencies. These few ones are of concern: * libsis-jhdf5-java : unmaintained upstream - low popcon * pytables : doesn't support new hdf5 API - popcon

Bug#842177: transition: hdf5

2016-10-26 Thread Gilles Filippini
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi Release Team, I hereby request a transition slot for hdf5 1.10 currently in experimental. This release ships major changes and has

Bug#841954: [Debichem-devel] Bug#841954: HDF5 1.10

2016-10-25 Thread Gilles Filippini
On 2016-10-25 12:12, Graham Inggs wrote: Gilles, just to be clear, do you want us to upload chemps2 before or after you upload HDF5 1.10? Hi Graham, Before. Then Release Team handle the necessary binnmus during the transition. Thanks, _g.

Bug#841975: src:scilab: Please support building with HDF5 1.10

2016-10-24 Thread Gilles Filippini
@@ +scilab (5.5.2-3) unstable; urgency=medium + + * New patch to support HDF5-1.10 + + -- Gilles Filippini <p...@debian.org> Sat, 22 Oct 2016 15:54:20 +0200 + scilab (5.5.2-2) unstable; urgency=medium * Team upload. diff -Nru scilab-5.5.2/debian/patches/hdf5-1.10-api.patch scilab-5.5.2/

Bug#841972: minc-tools: Please support building against HDF5 1.10

2016-10-24 Thread Gilles Filippini
HDF5-1.10. + + -- Gilles Filippini <p...@debian.org> Thu, 20 Oct 2016 20:52:19 +0200 + minc-tools (2.3.00+dfsg-1) unstable; urgency=medium * New upstream release. diff -Nru minc-tools-2.3.00+dfsg/debian/patches/hdf5-1.10-support.patch minc-tools-2.3.00+dfsg/debian/patches/hdf

Bug#841971: gnudatalanguage: Please support building against HDF5 1.10

2016-10-24 Thread Gilles Filippini
to support HDF5 1.10 + + -- Gilles Filippini <p...@debian.org> Sat, 23 Jul 2016 18:34:25 +0200 + gnudatalanguage (0.9.6v2-3) unstable; urgency=medium * Another patch for gcc-6 compatibility diff -Nru gnudatalanguage-0.9.6v2/debian/patches/hdf5-1.10.patch gnudatalanguage-0.9.6v2/debian/patche

Bug#841970: libminc: Please support building against HDF5 1.10

2016-10-24 Thread Gilles Filippini
@@ +libminc (2.3.00-3.1) unstable; urgency=medium + + * Non-maintainer upload + * New patch to support HDF5 1.10 + + -- Gilles Filippini <p...@debian.org> Thu, 20 Oct 2016 19:31:10 +0200 + libminc (2.3.00-3) unstable; urgency=medium * Wrote watch file diff -Nru libminc-2.3.00/debian/p

Bug#841967: adios: Please support building against HDF5 1.10

2016-10-24 Thread Gilles Filippini
Author: Gilles Filippini <p...@debian.org> +Index: adios-1.9.0/utils/bp2h5/bp2h5.c +=== +--- adios-1.9.0.orig/utils/bp2h5/bp2h5.c adios-1.9.0/utils/bp2h5/bp2h5.c +@@ -43,7 +43,9 @@ + #include "dmalloc.h" + #endif

Bug#841966: xdmf: Please support building against HDF5 1.10

2016-10-24 Thread Gilles Filippini
+ + -- Gilles Filippini <p...@debian.org> Sat, 23 Jul 2016 15:06:23 +0200 + xdmf (2.1.dfsg.1-15) unstable; urgency=medium * Fix Typo in depends lib*gz*stream-dev. Closes: 819872 diff -Nru xdmf-2.1.dfsg.1/debian/patches/hdf5-1.10.patch xdmf-2.1.dfsg.1/debian/patches/hdf5-1.10.patch --- xd

Bug#841965: nexus: Please support building against HDF5-1.10

2016-10-24 Thread Gilles Filippini
/changelog --- nexus-4.3.2-svn1921/debian/changelog 2015-12-14 00:09:11.0 +0100 +++ nexus-4.3.2-svn1921/debian/changelog 2016-10-21 00:25:42.0 +0200 @@ -1,3 +1,9 @@ +nexus (4.3.2-svn1921-4) unstable; urgency=medium + + * Fix HDF5 1.10 detection + + -- Gilles Filippini <p...@debian.org>

Bug#841964: med-fichier: 3.0.6-10

2016-10-24 Thread Gilles Filippini
to fix FTBFS with +HDF5 1.10 + + -- Gilles Filippini <p...@debian.org> Thu, 20 Oct 2016 21:59:50 +0200 + med-fichier (3.0.6-10) unstable; urgency=medium * [f6af4e3] Fix autopkgtest. diff -Nru med-fichier-3.0.6/debian/patches/fix-fid-type-in-medequivinfo.patch med-fichier-3.0.6/debian/p

Bug#841963: libpdl-io-hdf5-perl: Please support building against HDF5-1.10

2016-10-24 Thread Gilles Filippini
patch for HDF5 1.10 support + + -- Gilles Filippini <p...@debian.org> Sun, 24 Jul 2016 08:34:49 +0200 + libpdl-io-hdf5-perl (1:0.73-2) unstable; urgency=medium * Team upload. diff -Nru libpdl-io-hdf5-perl-0.73/debian/patches/hdf5-1.10.patch libpdl-io-hdf5-perl-0.73/debian/patches/hdf

Bug#841962: libgpiv: Please support building against HDF5 1.10

2016-10-24 Thread Gilles Filippini
-0.6.1/debian/changelog +++ libgpiv-0.6.1/debian/changelog @@ -1,3 +1,10 @@ +libgpiv (0.6.1-4.4) unstable; urgency=medium + + * Non-maintainer upload. + * New patch 04-avoid-bool-keyword.diff to fix FTBFS against HDF5 1.10. + + -- Gilles Filippini <p...@debian.org> Fri, 22 Jul 2016 14:05:02

Bug#841961: nmu: ocaml_4.02.3-7

2016-10-24 Thread Gilles Filippini
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Please rebuild ocaml against the pie-enabled compiler chain, to fix an FTBFS of scilab package: ocamlopt -o modelicac -I

Bug#841959: ismrmrd: Please support building against HDF5 1.10

2016-10-24 Thread Gilles Filippini
/debian/changelog 2016-09-02 12:27:37.0 +0200 +++ ismrmrd-1.3.2/debian/changelog 2016-10-19 00:59:02.0 +0200 @@ -1,3 +1,10 @@ +ismrmrd (1.3.2-4.1) unstable; urgency=medium + + * Non-maintainer upload + * New patch to support HDF5 1.10 + + -- Gilles Filippini <p...@debian.org> W

Bug#841947: [pkg-boost-devel] Bug#841947: libboost-*1.61-dev: Please build static libs with -fPIC

2016-10-24 Thread Gilles Filippini
t; > Note that using -fPIC on static libs is against current Debian Policy. You're right. I've just tested building psi4 against a fresh build of boost1.61, and it works. I've submitted a binnmu request accordingly. Thanks, _g. > > On Mon, Oct 24, 2016 at 08:19:13PM +0200, Gilles Filippi

Bug#841956: nmu: boost1.61_1.61.0+dfsg-3

2016-10-24 Thread Gilles Filippini
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, Please rebuild boost1.61 against the pie-enabled compiler chain, to fix this FTBFS of psi4 package: [100%] Linking CXX executable

Bug#841954: chemps2: Please support building against HDF5 1.10

2016-10-24 Thread Gilles Filippini
/debian/changelog 2016-09-09 15:49:00.0 +0200 +++ chemps2-1.8/debian/changelog 2016-10-18 23:48:20.0 +0200 @@ -1,3 +1,10 @@ +chemps2 (1.8-2.1) unstable; urgency=medium + + * Non-maintainer upload + * Update symbols file to support HDF5 1.10 + + -- Gilles Filippini <p...@debian.org>

Bug#841947: libboost-*1.61-dev: Please build static libs with -fPIC

2016-10-24 Thread Gilles Filippini
Source: boost1.61 Version: 1.61.0+dfsg-3 Severity: serious Justification: make other packages FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, When rebuilding the psi4 package on amd6', it FTBFS with: [100%] Linking CXX executable ../../../bin/psi4 cd /<>/builddir/src/bin/psi4 &&

Bug#841940: nmu: antlr_2.7.7+dfsg-7

2016-10-24 Thread Gilles Filippini
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The antlr package currently in unstable isn't built with -fPIC, leading to FTFS for some of its reverse dependencies, such as nco:

Bug#841929: nmu: libctl_3.2.2-2

2016-10-24 Thread Gilles Filippini
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, A rebuild of libctl seems sufficiant to fix #837568: > /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/libctlgeom.a(geom.o): >

Bug#832634: sikuli-ide: new upstream version / upload of version 1.1.0 for unstable?

2016-07-28 Thread Gilles Filippini
Hi, Michael Prokop a écrit le 28/07/2016 à 00:33 : > Package: sikuli-ide > Version: 1.1.0-1~exp3 > Severity: wishlist > > Hi, > > (Cc-ing intrigeri who kindly pointed me towards sikuli and it works > fine so far for us, thx!) > > In experimental I see sikuli version 1.1.0-1~exp3 dating back to

Bug#832035: libfast5-dev: wrong type for file_type_id in hdf5_tools.hpp - should be hid_t instead of int

2016-07-21 Thread Gilles Filippini
+compatibility. + + -- Gilles Filippini <p...@debian.org> Thu, 21 Jul 2016 17:06:57 +0200 + fast5 (0~20150918-1) unstable; urgency=low * Initial release - upstream git revision 0639cc5 (Closes: #811460) diff -Nru fast5-0~20150918/debian/patches/fix-id-type.patch fast5-0~20150918/debian/p

Bug#826522: Set the plugin directory

2016-06-30 Thread Gilles Filippini
Jerome BENOIT a écrit le 29/06/2016 à 08:32 : > Hi, > > On 29/06/16 07:16, PICCA Frederic-Emmanuel wrote: >>> I've juste uploaded release 1.10.0-patch1+docs-1~exp3 to experimental, >>> configured with: >>> --with-default-plugindir=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/plugins > > >> Just for

Bug#826522: Set the plugin directory

2016-06-29 Thread Gilles Filippini
Hi, Jérôme Kieffer a écrit le 28/06/2016 à 09:16 : > Dear HDF5 package maintainers, > > Currently the debian build system does not enforce the plugin directory > for HDF5 filters, defaulting to "/usr/local/hdf5/lib/plugin". I guess > Debian would prefer something like: > "/usr/share/hdf5/plugin"

Bug#762892: switchsh: diff for NMU version 0~20070801-3.2

2016-06-05 Thread Gilles Filippini
) + + -- Gilles Filippini <p...@debian.org> Wed, 25 May 2016 18:20:23 +0200 + switchsh (0~20070801-3.1) unstable; urgency=low * Non-maintainer upload. diff -u switchsh-0~20070801/debian/patches/series switchsh-0~20070801/debian/patches/series --- switchsh-0~20070801/debian/patches/

Bug#762892: switchsh: Applies changes globally, at least with systemd

2016-05-25 Thread Gilles Filippini
0~20070801/debian/changelog +++ switchsh-0~20070801/debian/changelog @@ -1,3 +1,11 @@ +switchsh (0~20070801-3.2) unstable; urgency=medium + + * Non-maintainer upload. + * Remount / with MS_SLAVE|MS_REC inside the CLONE_NEWNS namespace so +that the bind mount doesn't affect the entire system (close

Bug#818909: Segfaults caused by new DT_MIPS_RLD_MAP_REL tag and RPATH removers

2016-04-09 Thread Gilles Filippini
Control: reopen -1 On Fri, 8 Apr 2016 13:34:04 +0200 Emilio Pozuelo Monfort wrote: > On Fri, 8 Apr 2016 12:16:47 +0200 Alastair McKinstry > wrote: > > > > >> OpenMPI maintainers (and anyone else affected): > > >> One possible workaround is to use

Bug#818909: libopenmpi-dev: [mips*] mpicc.openmpi unusable

2016-03-21 Thread Gilles Filippini
Package: libopenmpi-dev Version: 1.10.2-11 Severity: grave Justification: renders package unusable -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, hdf5 FTBFS on mips* [0][1][2] at the configure step of the openmpi build: mips: checking for mips-linux-gnu-gcc... mpicc.openmpi checking

Bug#818632: RM: sikuli/experimental -- ROM; superseded by sikulix

2016-03-18 Thread Gilles Filippini
Package: ftp.debian.org Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, Please remove sikuli 1.0.1-2 from experimental. The project name was changed to sikulix with release 1.1.0 now in experimental. Thanks in advance, _g. -BEGIN PGP SIGNATURE- Version: GnuPG v1

Bug#812573: nmu: libaec_0.3.2-1

2016-01-25 Thread Gilles Filippini
On Mon, 25 Jan 2016 09:27:14 +0100 Gilles Filippini <p...@debian.org> wrote: > Package: release.debian.org > Severity: normal > User: release.debian@packages.debian.org > Usertags: binnmu > > Hi, > > Despite successful buildlog [0], libaec binary packages are

Bug#812686: RM: navit-graphics-qt-qpainter -- NBS; ROM

2016-01-25 Thread Gilles Filippini
Package: ftp.debian.org Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Package excluded from last upload because this plugin is unmaintained and barely usable. Thanks, _g. -BEGIN PGP SIGNATURE- Version: GnuPG v1

Bug#812573: nmu: libaec_0.3.2-1

2016-01-25 Thread Gilles Filippini
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, Despite successful buildlog [0], libaec binary packages are missing for arch x32. Please rebuild them. [0]

Bug#811093: hdf5: Please link against libaec-dev for libsz

2016-01-19 Thread Gilles Filippini
Dirk Eddelbuettel a écrit le 19/01/2016 19:34 : > > On 19 January 2016 at 19:24, Gilles Filippini wrote: > | Dirk Eddelbuettel a écrit le 19/01/2016 13:46 : > | > > | > Hi Alastair, > | > > | > On 15 January 2016 at 15:24, Alastair McKinstry wrote: > | >

Bug#811093: hdf5: Please link against libaec-dev for libsz

2016-01-19 Thread Gilles Filippini
Dirk Eddelbuettel a écrit le 19/01/2016 13:46 : > > Hi Alastair, > > On 15 January 2016 at 15:24, Alastair McKinstry wrote: > | Source: hdf5 > | Severity: normal > | > | libaec-dev has recently entered sid (and testing/backports). It is a free > implementation > | of the SZLIB compression

Bug#808936: libmpich-dev: miss /usr/bin/mpif90.mpich

2015-12-24 Thread Gilles Filippini
Package: libmpich-dev Version: 3.2-1 Severity: grave Justification: renders package unusable Hi, With this last release libmpich-dev doesn't provide /usr/bin/mpif90.mpich anymore, causing FTBFSs (at least for hdf5). Thanks, _g. -- System Information: Debian Release: stretch/sid APT prefers

Bug#601135: Cannot be fixed without an example file

2015-12-21 Thread Gilles Filippini
Hi Sebastian, Sebastian Leske a écrit le 08/12/2015 01:40 : > thanks for bringing up this bug report. > > Unfortunately, I think as it stands this bug will need to be closed as > unreproducible. > Without having the file the bug reporter used, it's next to impossible > to tell what the problem

Bug#805825: transition: hdf5

2015-11-24 Thread Gilles Filippini
Emilio Pozuelo Monfort a écrit le 24/11/2015 16:03 : > Control: tags -1 confirmed > > On 22/11/15 21:34, Gilles Filippini wrote: >> With release 1.8.16 of hdf5 currently in experimental, the soname of >> the C++ library was bumped: >> libhdf5-cpp-10 -> libhdf5-cpp

Bug#805825: transition: hdf5

2015-11-22 Thread Gilles Filippini
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition Hi, With release 1.8.16 of hdf5 currently in experimental, the soname of the C++ library was bumped: libhdf5-cpp-10 -> libhdf5-cpp-11 This triggers a mini-transition. There are only

Bug#760301: openjdk-8: Missing links to jawt_md.h and jni_md.h in /usr/lib/jvm/java-8-openjdk-amd64/include

2015-11-06 Thread Gilles Filippini
Hi Matthias, On Tue, 09 Sep 2014 19:01:05 +0200 Matthias Klose wrote: > Control: tags -1 + wontfix > > this is done by intent. These compat symlinks were wrong in openjdk-7. For further reference, could you give your rationale about it? I've just been bitten by this: [INFO]

Bug#798652: scilab: scilab doesn't work on ppc64el: could not find the Java configuration for the model <>

2015-10-20 Thread Gilles Filippini
Hi Erwan, On Fri, 11 Sep 2015 15:45:19 +0200 Erwan Prioul wrote: > Package: scilab > Version: 5.5.2-1 > Severity: normal > > While scilab is available on ppc64el, it doesn't actually work: > > $ /usr/bin/scilab > > Could not find the Java configuration for the model .

Bug#798652: scilab: scilab doesn't work on ppc64el: could not find the Java configuration for the model <>

2015-10-20 Thread Gilles Filippini
On Tue, 20 Oct 2015 19:14:30 +0200 Gilles Filippini <p...@debian.org> > Could you please give a try at release 5.5.2-2~exp3 currently in > unstable? Oops. Please read *experimental*. Thanks, _g. signature.asc Description: OpenPGP digital signature

Bug#779482: severity of 779482 is grave

2015-10-17 Thread Gilles Filippini
On Wed, 07 Oct 2015 17:42:23 +0200 Markus Koschany <a...@gambaru.de> wrote: > Control: forwarded -1 https://jogamp.org/bugzilla/show_bug.cgi?id=1246 > > On Tue, 06 Oct 2015 23:53:17 +0200 Gilles Filippini <p...@debian.org> wrote: > > For the record, I've pinged up

Bug#801129: RM: sciscipy [ppc64el] -- ANAIS; Depends on scilab which is unusable on ppc64el

2015-10-06 Thread Gilles Filippini
Package: ftp.debian.org Severity: normal -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The scilab source package now FTBFS on ppc64el (#801060). Even if it could build, the resulting package is unusable (#798652) because it depends on a java library (bluegen2) with explicitely no upstream

Bug#801152: RM: scilab [ppc64el] -- ANAIS; FTBFS and anyway unusable on ppc64el

2015-10-06 Thread Gilles Filippini
Package: ftp.debian.org Severity: normal Control: block -1 by 801129 -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, As already explained in #801129: > The scilab source package now FTBFS on ppc64el (#801060). Even if it > could build, the resulting package is unusable (#798652) because it

Bug#779482: severity of 779482 is grave

2015-10-06 Thread Gilles Filippini
For the record, I've pinged upstream and proposed a patch for ppc64el. The good news is they seem responsive [1]. [1] Unfortunately I couldn't test the usability of my patch yet, because I didn't succeed with remote X display on ppc64el

Bug#798256: transition: hdf5

2015-10-06 Thread Gilles Filippini
Le 2015-10-06 11:07, Emilio Pozuelo Monfort a écrit : On 05/10/15 23:02, Gilles Filippini wrote: Please tell me in case of anything left blocking the transition. There's #801060. This one is really annoying. Scilab could build on ppc64el, but it would be unusable anyway because of #798652

Bug#801060: Fwd: Re: Bug#798256: transition: hdf5

2015-10-06 Thread Gilles Filippini
CCing #801060 for the record. Courriel original Objet: Re: Bug#798256: transition: hdf5 Date: 2015-10-06 12:59 De: Gilles Filippini <p...@debian.org> À: Emilio Pozuelo Monfort <po...@debian.org> Cc: 798...@bugs.debian.org, Emilio Pozuelo Monfort <poch...@gmail.c

Bug#798256: transition: hdf5

2015-10-05 Thread Gilles Filippini
Emilio Pozuelo Monfort a écrit le 05/10/2015 17:59 : > Control: tag 798256 791067 + pending > > On 05/10/15 17:13, Gilles Filippini wrote: >> Hi, >> >> On Wed, 30 Sep 2015 10:04:48 +0200 Gilles Filippini <p...@debian.org> wrote: >>> Emilio Po

Bug#800900: hurd-i386: changeset from r6489 breaks SIGBUS handling

2015-10-05 Thread Gilles Filippini
Hi, I've reduced the testcase to the attached H5detect.c. The behavior is different depending on whether we link with "-lpthread": pini@exodar:~/tmp$ /usr/bin/gcc -o H5detect H5detect.c pini@exodar:~/tmp$ ./H5detect verify_signal_handlers for signal 10 did 5 tries. Found 2 failures and 3

Bug#779482: severity of 779482 is grave

2015-10-05 Thread Gilles Filippini
Markus Koschany a écrit le 05/10/2015 13:02 : > Am 05.10.2015 um 12:48 schrieb Emmanuel Bourg: >> Le 05/10/2015 12:18, Markus Koschany a écrit : > I think it's ok to initially build with arch:any as long as there is > sufficient support from upstream. However if it turns out that some >

Bug#798256: transition: hdf5

2015-10-05 Thread Gilles Filippini
Hi, On Wed, 30 Sep 2015 10:04:48 +0200 Gilles Filippini <p...@debian.org> wrote: > Emilio Pozuelo Monfort a écrit le 30/09/2015 00:37 : > > Control: tags -1 confirmed > > > > On 21/09/15 13:08, Gilles Filippini wrote: > >> Ping. > > > > I t

Bug#779482: severity of 779482 is grave

2015-10-04 Thread Gilles Filippini
Control: severity -1 grave On Fri, 18 Sep 2015 17:49:54 +0200 Emmanuel Bourg wrote: > severity 779482 important > thanks Setting back severity to grave because ppc64el is an official architecture since novembre 2014 and there is no point in providing gluegen2 for ppc64el if

Bug#800900: hurd-i386: changeset from r6489 breaks SIGBUS handling

2015-10-04 Thread Gilles Filippini
Package: libc0.3 Version: 2.19-22 Severity: important -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, hdf5 recently started to FTBFS on hurd-i386 [1] with no source code change since the last successful build. [1]

Bug#800900: hurd-i386: changeset from r6489 breaks SIGBUS handling

2015-10-04 Thread Gilles Filippini
Samuel Thibault a écrit le 04/10/2015 21:19 : > Hello, > > Gilles Filippini, le Sun 04 Oct 2015 19:48:51 +0200, a écrit : >> I think the cause of this bus error is the upgrade of glibc from >> 2.19-19 to 2.19-22 because building with libc0.3 from glibc 2.19-19 is >&

Bug#800900: hurd-i386: changeset from r6489 breaks SIGBUS handling

2015-10-04 Thread Gilles Filippini
Gilles Filippini a écrit le 04/10/2015 22:43 : > Samuel Thibault a écrit le 04/10/2015 21:19 : >> Hello, >> >> Gilles Filippini, le Sun 04 Oct 2015 19:48:51 +0200, a écrit : >>> I think the cause of this bus error is the upgrade of glibc from >>> 2.19-19 t

Bug#800632: scilab: diff for NMU version 5.5.2-1.1

2015-10-03 Thread Gilles Filippini
API changes: +- xmlgraphics-commons-2.0.diff +- fop-2.0.diff +- batik-1.8.diff +(closes: #800632). + + -- Gilles Filippini <p...@debian.org> Sat, 03 Oct 2015 10:06:53 +0200 + scilab (5.5.2-1) unstable; urgency=medium * New upstream release diff -Nru scilab-5.5.2/

Bug#800632: scilab: diff for NMU version 5.5.2-1.1

2015-10-03 Thread Gilles Filippini
Sylvestre Ledru a écrit le 03/10/2015 13:28 : > No, go ahead, no need to wait :) Ack. Rescheduling to 0-day. Thanks, _g. signature.asc Description: OpenPGP digital signature

Bug#798652: scilab: scilab doesn't work on ppc64el: could not find the Java configuration for the model <>

2015-10-03 Thread Gilles Filippini
On Fri, 11 Sep 2015 16:40:40 +0200 Sylvestre Ledru wrote: > Jogl has to be updated too. I think there is a familiar patch for another > arch. No, this is gluegen2. And looking at the source I fail to see any ppc64el support. Then, is there still a point for scilab to

Bug#800466: pytables: diff for NMU version 3.2.1-1.1

2015-10-02 Thread Gilles Filippini
. + * New patch: 0006-Fix-upstream-issue-481.patch +Fix test suite errors such as 'ValueError: could not broadcast +input array from shape (2) into shape (0)' (closes: #800466). + + -- Gilles Filippini <p...@debian.org> Fri, 02 Oct 2015 20:01:01 +0200 + pytables (3.2.1-1) unstable; u

Bug#800466: pytables: diff for NMU version 3.2.1-1.1

2015-10-02 Thread Gilles Filippini
Scott Kitterman a écrit le 02/10/2015 23:48 : > On Friday, October 02, 2015 08:52:47 PM Gilles Filippini wrote: >> Control: tags 800466 + patch >> Control: tags 800466 + pending >> >> [Replace XX with correct value] >> Dear maintainer, >> >> I've pre

Bug#798256: transition: hdf5

2015-09-30 Thread Gilles Filippini
Emilio Pozuelo Monfort a écrit le 30/09/2015 00:37 : > Control: tags -1 confirmed > > On 21/09/15 13:08, Gilles Filippini wrote: >> Ping. > > I think we can do this now. Go for it. Release 1.8.15-patch1+docs-4 upploaded to unstable. Thanks, _g. signature.asc Descrip

Bug#800466: FTBFS: 4 failed tests with ValueError: could not broadcast input array

2015-09-29 Thread Gilles Filippini
On Tue, 29 Sep 2015 20:46:42 +0200 Gilles Filippini <p...@debian.org> wrote: > Source: pytables > Version: 3.2.1-1 > Severity: serious > Justification: FTBFS > > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA256 > > Hi, > > pytables FTBFS on a clean amd6

Bug#798256: transition: hdf5

2015-09-21 Thread Gilles Filippini
Ping. Thanks, _g. On Mon, 07 Sep 2015 14:11:17 +0200 Gilles Filippini <p...@debian.org> wrote: > Package: release.debian.org > Severity: normal > User: release.debian@packages.debian.org > Usertags: transition > > -BEGIN PGP SIGNED MESSAGE- > Has

Bug#797718: flann: transition may be needed for g++-5 ABIs

2015-09-07 Thread Gilles Filippini
Control: unblock -1 by 791067 On Tue, 1 Sep 2015 23:02:18 +0100 Simon McVittie wrote: > Source: flann > Version: 1.8.4-4.1 > Severity: important > Control: block -1 by 791067 > > Background[1]: libstdc++6 introduces a new ABI to conform to the > C++11 standard, but keeps the

Bug#797718: flann: transition may be needed for g++-5 ABIs

2015-09-07 Thread Gilles Filippini
On Mon, 07 Sep 2015 08:44:46 +0200 Gilles Filippini <p...@debian.org> wrote: > Control: unblock -1 by 791067 > > On Tue, 1 Sep 2015 23:02:18 +0100 Simon McVittie <s...@debian.org> wrote: > > Source: flann > > Version: 1.8.4-4.1 > > Severity: im

Bug#798256: transition: hdf5

2015-09-07 Thread Gilles Filippini
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, Now that the GCC-5 rebuilt hdf5 1.8.13 has made its way into testing I kindly request a transition slot for release 1.8.15 which

Bug#791067: hdf5: library transition may be needed when GCC 5 is the default

2015-09-03 Thread Gilles Filippini
Julien Cristau a écrit le 03/09/2015 07:26 : > On Thu, Sep 3, 2015 at 01:26:35 +0200, Gilles Filippini wrote: > >> So where does this 'MUST NOT' come from just now that all that work is over? >> > It comes from me wanting to get gcc-defaults migrated this week. Wh

Bug#791067: hdf5: library transition may be needed when GCC 5 is the default

2015-09-02 Thread Gilles Filippini
Julien Cristau a écrit le 02/09/2015 17:56 : > On Wed, Sep 2, 2015 at 14:49:18 +0200, Sebastiaan Couwenberg wrote: > >> On 02-09-15 14:37, Gilles Filippini wrote: >>> Gilles Filippini a écrit le 28/08/2015 00:12 : >>>> Sebastiaan Couwenberg a écrit le 2

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