Bug#791067: hdf5: library transition may be needed when GCC 5 is the default

2015-09-02 Thread Gilles Filippini
Gilles Filippini a écrit le 02/09/2015 18:14 : > Julien Cristau a écrit le 02/09/2015 17:56 : >> On Wed, Sep 2, 2015 at 14:49:18 +0200, Sebastiaan Couwenberg wrote: >> >>> On 02-09-15 14:37, Gilles Filippini wrote: >>>> Gilles Filippini a écrit le 28/08/2015

Bug#791067: hdf5: library transition may be needed when GCC 5 is the default

2015-09-02 Thread Gilles Filippini
Julien Cristau a écrit le 02/09/2015 20:57 : > Hrm. Do I see correctly that hdf5 1.8.15 bumps SONAME of the C library? > If so, that MUST NOT be uploaded to unstable before the C++ fun is over. > If a transition is needed for the C++ lib, that must be done separately > and ahead of the switch to

Bug#797476: h5py: FTBFS - Broken test: test_file.py

2015-09-02 Thread Gilles Filippini
Control: severity -1 normal Hi, On Mon, 31 Aug 2015 00:06:23 +0200 Gilles Filippini <p...@debian.org> wrote: > h5py now FTBFS because of a broken test: > > == > FAIL: test_default (h5py.tests.old.test

Bug#791067: hdf5: library transition may be needed when GCC 5 is the default

2015-09-02 Thread Gilles Filippini
Control: reassign -1 release.debian.org Gilles Filippini a écrit le 28/08/2015 00:12 : > Sebastiaan Couwenberg a écrit le 27/08/2015 10:17 : >> I suggest to reassign the hdf5 transition issue back to >> release.debian.org, because I would also like to see a single hdf5 >&g

Bug#797526: mapsembler2: FTBFS with GCC-5 - undefined reference to `prefix_trashable[abi:cxx11]'

2015-08-31 Thread Gilles Filippini
Source: mapsembler2 Version: 2.2.3+dfsg-2 Severity: serious Justification: FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, During a rebuild against GCC-5 mapsembler2 FTBFS with: /tmp/ccXWIZkS.o: In function `main':

Bug#797100: ben: Uncaught exception: ben-specific error: No configuration file has been specified

2015-08-30 Thread Gilles Filippini
Control: severity -1 normal Control: retitle -1 misleading directions in example ocaml.ben Hi Mehdi, Mehdi Dogguy a écrit le 29/08/2015 09:51 : Configuration files are made to specify general parameters (like list of architectures, path of cache file, etc...). .ben files are not considered

Bug#797475: fw4spl: does not support parallel build

2015-08-30 Thread Gilles Filippini
Source: fw4spl Version: 0.9.2-3 Severity: serious Justification: FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, It seems fw4spl doesn't support parallel build. When using DEB_BUILD_OPTIONS=parallel=6 it fails repeatedly with: Generating moc_CppHighlighter.cpp Generating

Bug#797476: h5py: FTBFS - Broken test: test_file.py

2015-08-30 Thread Gilles Filippini
Source: h5py Version: 2.5.0-1 Severity: serious Justification: FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, h5py now FTBFS because of a broken test: == FAIL: test_default (h5py.tests.old.test_file.TestFileOpen)

Bug#797481: fw4spl: FTBFS - Doesn't support boost 1.58

2015-08-30 Thread Gilles Filippini
Source: fw4spl Version: 0.9.2-3 Severity: serious Justification: FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, fw4spl FTBFS with: /tmp/buildd/fw4spl-0.9.2/SrcLib/core/fwDataIO/src/fwDataIO/reader/TriangularMeshReader.cpp:15:60: fatal error:

Bug#797100: ben: Uncaught exception: ben-specific error: No configuration file has been specified

2015-08-27 Thread Gilles Filippini
Package: ben Version: 0.7.2 Severity: important Hi, 'ben monitor' complains about missing configuration file when trying a any of the valid examples. For instance: (sid)pini@pinislim:~/tmp$ mkdir work (sid)pini@pinislim:~/tmp$ cd work (sid)pini@pinislim:~/tmp/work$ ben download Downloading

Bug#797117: freefem++: missing build-dependency on libhdf5-dev

2015-08-27 Thread Gilles Filippini
Source: freefem++ Version: 3.37.1-1 Severity: serious Justification: The uploaded binary packages weren't built into a clean chroot, causing an extra libhdf5-8 [amd64] dependency -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, Trying to understand why freefem++ had 'Depends: libhdf5

Bug#791067: hdf5: library transition may be needed when GCC 5 is the default

2015-08-27 Thread Gilles Filippini
Sebastiaan Couwenberg a écrit le 27/08/2015 10:17 : I suggest to reassign the hdf5 transition issue back to release.debian.org, because I would also like to see a single hdf5 transition instead of two (I made the same decisions for netcdf geos). Yes, I'll do that *after* having the rdeps

Bug#791067: hdf5: library transition may be needed when GCC 5 is the default

2015-08-26 Thread Gilles Filippini
Hi Simon, Thanks for helping :) Simon McVittie a écrit le 27/08/2015 00:36 : On Sat, 18 Jul 2015 at 12:15:10 +0200, Gilles Filippini wrote: hdf5 in experimental have a soversion bump. From there I'm unsure about what to do right now. This SONAME bump means the necessary rename has taken

Bug#791067: reassign 791067 to src:hdf5

2015-08-25 Thread Gilles Filippini
Hi, On Fri, 21 Aug 2015 11:44:50 -0700 Steve Langasek vor...@debian.org wrote: # this bug belongs to the hdf5 package, not to release.debian.org reassign 791067 src:hdf5 thanks Please explain your rationals. I just followed Matthias' instructions: - If a library transition is needed,

Bug#790909: pdflatex: LaTeX Error: Unknown float option `c'

2015-07-03 Thread Gilles Filippini
Norbert Preining a écrit le 03/07/2015 11:12 : On Fri, 03 Jul 2015, Gilles Filippini wrote: Fine. But I reported the first occurence only. There is an error with location specifier 'H' as well, the same as reported in #750536 and which was considered valid by then (june 2014): ! LaTeX Error

Bug#790909: pdflatex: LaTeX Error: Unknown float option `c'

2015-07-03 Thread Gilles Filippini
Norbert Preining a écrit le 03/07/2015 01:10 : retitle 790909 [wishlist] allow for incorrect figure placement specifier severity 790909 wishlist tag 790909 + will-not-fix thanks On Thu, 02 Jul 2015, Gilles Filippini wrote: ! LaTeX Error: Unknown float option `c'. 'c' is not a valid

Bug#790909: pdflatex: LaTeX Error: Unknown float option `c'

2015-07-02 Thread Gilles Filippini
Package: texlive-latex-base Version: 2015.20150625-1 Severity: serious Justification: Causes FTBFSs - at least for code-saturne -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Dear Maintainer, Starting with release 2015.20150625-1 of texlive-latex-base, the package code-saturne FTBFS at doc

Bug#785720: debdiff to make wrappers patchable, and add path to classpaths

2015-05-19 Thread Gilles Filippini
Hi Chad, Chad Miller a écrit le 19/05/2015 18:04 : Control: severity -1 important Control: tags -1 patch thanks This changes the wrappers to span several lines first, then in a later patch, adds the new classpath item. As I understand it there is no more libconstantine-java.jar in sid.

Bug#756129: gem2deb: dh_ruby should allow extra parameters to extconf.rb

2015-05-11 Thread Gilles Filippini
Hi Lucas, Lucas Nussbaum a écrit le 08/05/2015 08:14 : On 26/07/14 at 17:56 +0200, Gilles Filippini wrote: Package: gem2deb Version: 0.7.5 Severity: wishlist Hi, Sometimes the maintainer needs passing hints to extconf.rb, such as --with-feature=directory I tried: dh_auto_install

Bug#638753: Fwd: Re: HDF5 - Status request for ticket 'HELPDSK-121'

2015-04-14 Thread Gilles Filippini
Control: forwarded -1 HDFFV-7713 Message transféré Sujet : Re: HDF5 - Status request for ticket 'HELPDSK-121' Date : Mon, 13 Apr 2015 10:13:33 -0500 De : h...@hdfgroup.org Pour : Gilles Filippini p...@debian.org Hi Gilles, The bug report for the issue you refer to is HDFFV

Bug#781124: unblock (pre-approval): icedtea-web/1.5-2+deb8u1

2015-03-29 Thread Gilles Filippini
Niels Thykier a écrit le 28/03/2015 19:59 : Control: tags -1 confirmed moreinfo On 2015-03-24 21:53, Gilles Filippini wrote: Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock Hello Release team, I've prepared a NMU

Bug#781124: unblock (pre-approval): icedtea-web/1.5-2+deb8u1

2015-03-24 Thread Gilles Filippini
alternatives handling in icedtea-netx.postinst.in +(closes: #778631). + + -- Gilles Filippini p...@debian.org Sun, 22 Mar 2015 18:22:24 +0100 + icedtea-web (1.5-2) unstable; urgency=medium * Build-depend on iceweasel-dev. Closes: #752838. diff -Nru icedtea-web-1.5/debian/icedtea

Bug#778631: icedtea-web: diff for NMU version 1.5.2-1.1

2015-03-22 Thread Gilles Filippini
in icedtea-netx.postinst.in +(closes: #778631). + + -- Gilles Filippini p...@debian.org Sun, 22 Mar 2015 08:55:55 +0100 + icedtea-web (1.5.2-1) unstable; urgency=medium * IcedTea-Web 1.5.2 release. diff -Nru icedtea-web-1.5.2/debian/icedtea-netx.postinst.in icedtea-web-1.5.2/debian

Bug#778631: icedtea-netx: Fails to start despite dependencies being met

2015-03-21 Thread Gilles Filippini
Hi, On Tue, 17 Feb 2015 11:31:57 -0600 John Goerzen jgoer...@complete.org wrote: Package: icedtea-netx Version: 1.5-2 Severity: serious Justification: Doesn't start $ javaws launch.jnlp /usr/bin/javaws: line 102: /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/java: No such file or directory

Bug#778631: icedtea-netx: Fails to start despite dependencies being met

2015-03-21 Thread Gilles Filippini
Gilles Filippini a écrit le 21/03/2015 11:29 : Hi, On Tue, 17 Feb 2015 11:31:57 -0600 John Goerzen jgoer...@complete.org wrote: Package: icedtea-netx Version: 1.5-2 Severity: serious Justification: Doesn't start $ javaws launch.jnlp /usr/bin/javaws: line 102: /usr/lib/jvm/java-6

Bug#777598: [hdf5] MPI Versions Enhance libhdf5-serial

2015-02-10 Thread Gilles Filippini
Hi Axel, Axel Huebl a écrit le 10/02/2015 13:55 : Package: libhdf5-serial-dev Version: all Severity: wishlist Tags: newcomer Dear Debian HDF5 Maintainers, I realized a long-standing problem with the different package versions of hdf5 where I would like to propose a redesign of the

Bug#776845: Enable openmpi support in hdf5 package on hppa architecture (with patch)

2015-02-02 Thread Gilles Filippini
Severity: whishlist Block: by 776730 Helge Deller a écrit le 02/02/2015 13:57 : Package: hdf5 Version: 1.8.13+docs-15 Severity: normal Tags: patch Can you please apply the attached patch which adds hppa to the architectures which do support openmpi ? openmpi support was added for hppa

Bug#775151: unblock: code-saturne/3.3.2-3

2015-01-13 Thread Gilles Filippini
Niels Thykier a écrit le 13/01/2015 17:12 : Control: tags -1 moreinfo On 2015-01-12 01:37, Gilles Filippini wrote: Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock Please unblock package code-saturne Version 3.3.2-3 fixes RC

Bug#775107: code-saturne-data (arch=all) ships an arch-dependant script: cs_config.py

2015-01-11 Thread Gilles Filippini
Source: code-saturne Version: 3.3.2-2 Severity: serious Justification: Policy 5.6.8 -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Yvan Fournier a écrit le 10/01/2015 17:40 : Hello, There is a bug in the Debian packaging for Code_Saturne in Debian-sid, but I was not able to find where in

Bug#775151: unblock: code-saturne/3.3.2-3

2015-01-11 Thread Gilles Filippini
to +code-saturne-include (Closes: #775107). + + -- Gilles Filippini p...@debian.org Sun, 11 Jan 2015 16:01:45 +0100 + code-saturne (3.3.2-2) unstable; urgency=medium * Team upload. diff -Nru code-saturne-3.3.2/debian/code-saturne-include.install code-saturne-3.3.2/debian/code-saturne

Bug#758533: [Pkg-utopia-maintainers] Bug#758533: network-manager: wifi connected, internet connection does not work

2014-12-03 Thread Gilles Filippini
Control: tag -1 + patch Hi, On Sun, 30 Nov 2014 23:43:44 +0100 Gilles Filippini p...@debian.org wrote: Control: tag -1 + fixed-upstream Hi, On Fri, 22 Aug 2014 01:38:26 +0200 Michael Biebl bi...@debian.org wrote: Am 21.08.2014 20:26, schrieb Russ Allbery: Aug 21 10:33:19 wanderer

Bug#758533: [Pkg-utopia-maintainers] Bug#758533: network-manager: wifi connected, internet connection does not work

2014-11-30 Thread Gilles Filippini
Control: tag -1 + fixed-upstream Hi, On Fri, 22 Aug 2014 01:38:26 +0200 Michael Biebl bi...@debian.org wrote: Am 21.08.2014 20:26, schrieb Russ Allbery: Aug 21 10:33:19 wanderer NetworkManager[642]: info dhclient started with pid 17691 Aug 21 10:33:19 wanderer NetworkManager[642]: info

Bug#765511: hdf5: Resource exhaustion in HDF5 1.8.13

2014-10-17 Thread Gilles Filippini
Hi Jim, On Wed, 15 Oct 2014 10:51:16 -0700 Jim Garrison j...@garrison.cc wrote: Source: hdf5 Version: 1.8.13 Severity: important Dear Maintainer, There seems to be a resource exhaustion issue with HDF5 1.8.13, which was not present in version 1.8.12. I first reported this issue with

Bug#765511: hdf5: Resource exhaustion in HDF5 1.8.13

2014-10-17 Thread Gilles Filippini
Jim Garrison a écrit , Le 17/10/2014 18:55: On 10/17/2014 12:49 AM, Gilles Filippini wrote: Could you please gite a try at the not yet uploaded release 1.8.13+docs-15 I've just pushed into the git repo (branch master)? Thanks in advance, _g. Thanks so much for looking

Bug#765511: hdf5: Resource exhaustion in HDF5 1.8.13

2014-10-16 Thread Gilles Filippini
Hi Jim, On 2014-10-15 19:51, Jim Garrison wrote: Source: hdf5 Version: 1.8.13 Severity: important Dear Maintainer, There seems to be a resource exhaustion issue with HDF5 1.8.13, which was not present in version 1.8.12. I first reported this issue with the h5py package at

Bug#759790: meep: Randomly FTBFS on slow archs because of sbuild inactivity walltime

2014-09-21 Thread Gilles Filippini
Hi, Gilles Filippini a écrit , Le 30/08/2014 17:12: On Sat, 30 Aug 2014 14:17:12 +0200 Gilles Filippini p...@debian.org wrote: Source: meep Version: 1.2.1-2 Severity: serious Tags: patch Justification: randomly FTBFS Hi, On slow archs meep has to be given back several times because

Bug#760877: jackson-annotations: diff for NMU version 2.4.2-1.1

2014-09-09 Thread Gilles Filippini
. + * Fix debian/maven.{rules,publishedRules}: set type to bundle to +properly match the target (closes: #760877). + + -- Gilles Filippini p...@debian.org Mon, 08 Sep 2014 23:15:49 +0200 + jackson-annotations (2.4.2-1) unstable; urgency=medium * New upstream release. diff -Nru jackson

Bug#748587: Fwd: Re: Duplicate and conflicting definitions of variable FILENAME

2014-09-08 Thread Gilles Filippini
Message original Sujet: Re: Duplicate and conflicting definitions of variable FILENAME Date : Mon, 8 Sep 2014 09:58:20 -0500 De : h...@hdfgroup.org Pour : Gilles Filippini p...@debian.org Hello Gilles, Thank you for reporting it! I entered bug HDFFV-8911 for this issue

Bug#760877: libjackson2-annotations-java: Should provide jackson-annotations-2.x.pom

2014-09-08 Thread Gilles Filippini
Package: libjackson2-annotations-java Version: 2.4.2-1 Severity: serious Justification: Make other java packages FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, libjackson2-annotations-java should still provide the pom file alias jackson-annotations-2.x.pom because it is listed as a

Bug#760877: libjackson2-annotations-java: Should provide jackson-annotations-2.x.pom

2014-09-08 Thread Gilles Filippini
Control: tags -1 + patch On Mon, 08 Sep 2014 21:22:53 +0200 Gilles Filippini p...@debian.org wrote: Package: libjackson2-annotations-java Version: 2.4.2-1 Severity: serious Justification: Make other java packages FTBFS -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, libjackson2

Bug#703340: hdf5: Some upgrade scenarios does not fully work

2014-09-06 Thread Gilles Filippini
Control: tags -1 + wontfix On Mon, 18 Mar 2013 17:14:38 +0100 Sylvestre Ledru sylves...@debian.org wrote: Package: hdf5 Version: 1.8.8-9.1 Severity: important Hello, #667599 and #667526 have been partly fixed by the upload of version 1.8.8-9.1. However, as detailed here:

Bug#703439: H5Cpp.h missing in libhdf5-openmpi-dev and libhdf5-mpich2-dev?

2014-09-04 Thread Gilles Filippini
Control: wontfix -1 Hi, On Tue, 14 Jan 2014 16:18:41 +0100 Oliver Sander san...@igpm.rwth-aachen.de wrote: Any chance of having the C++ interface enabled in Debian, even though its 'at our own risk'? My problem is the following: I use gmsh a lot, which depends on libhdf5-openmpi. Hence

Bug#739261: libhdf5-openmpi-dev: Version in stable (wheezy) does not work with gfortran from stable

2014-09-04 Thread Gilles Filippini
Hi, On Fri, 13 Jun 2014 11:22:03 +0200 Emilio Pozuelo Monfort po...@debian.org wrote: On 12/06/14 21:51, Gilles Filippini wrote: nmu hdf5_1.8.8-9 . amd64 i386 kfreebsd-amd64 kfreebsd-i386 . stable . -m Rebuild with current gfortran in wheezy (closes: #739261) Hoping to get it right

Bug#739261: libhdf5-openmpi-dev: Version in stable (wheezy) does not work with gfortran from stable

2014-09-04 Thread Gilles Filippini
[resending because of a previously malformed address] Hi, On Fri, 13 Jun 2014 11:22:03 +0200 Emilio Pozuelo Monfort po...@debian.org wrote: On 12/06/14 21:51, Gilles Filippini wrote: nmu hdf5_1.8.8-9 . amd64 i386 kfreebsd-amd64 kfreebsd-i386 . stable . -m Rebuild with current gfortran

Bug#748587: Duplicate and conflicting definitions of variable FILENAME

2014-09-04 Thread Gilles Filippini
Hi Michael, On Sun, 18 May 2014 17:55:02 +0100 Michael Tautschnig m...@debian.org wrote: Package: hdf5 Version: 1.8.12+docs-1.1 Usertags: goto-cc During a rebuild of all packages in a clean sid chroot (and cowbuilder+pbuilder) the build failed with the following error. Please note that

Bug#760271: octave: Random FTBFS on armhf: panic: Segmentation fault -- stopping myself...

2014-09-02 Thread Gilles Filippini
Source: octave Version: 3.8.2-2 Severity: important Gilles Filippini a écrit , Le 01/09/2014 01:18: Sébastien Villemot a écrit , Le 01/09/2014 00:19: As you may have noted, the HDF5 transition is now almost finished for packages maintained by the Debian Octave Group. There however remains one

Bug#759794: insighttoolkit4: FTBFS on amd64 with ENOSPC

2014-09-02 Thread Gilles Filippini
Gilles Filippini a écrit , Le 31/08/2014 10:47: Kurt Roeckx a écrit , Le 30/08/2014 22:32: On Sat, Aug 30, 2014 at 08:10:41PM +0200, Philipp Kern wrote: On Sat, Aug 30, 2014 at 03:34:32PM +0200, Gilles Filippini wrote: insighttoolkit4 repeatedly FTBFS on amd64 [1] because of ENOSPC. A manual

Bug#755539: transition: hdf5

2014-09-01 Thread Gilles Filippini
Steven Chamberlain a écrit , Le 01/09/2014 14:38: block 749395 by 760125 block 749395 by 760162 thanks Hi, shogun did not build on all architectures, please see these two bugs with patches / suggestions. Hrm... https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=760120 Thanks, _g.

Bug#760165: graphviz: [kfreebsd] multithreaded dot hangs sometimes

2014-09-01 Thread Gilles Filippini
Hi, On Mon, 01 Sep 2014 13:33:26 +0100 Steven Chamberlain ste...@pyro.eu.org wrote: Package: shogun Version: 3.2.0-7.1 Severity: serious User: debian-...@lists.debian.org Usertags: kfreebsd Hi,

Bug#760120: shogun: diff for NMU version 3.2.0-7.2

2014-09-01 Thread Gilles Filippini
On Mon, 01 Sep 2014 01:31:26 +0200 Gilles Filippini p...@debian.org wrote: Package: shogun Version: 3.2.0-7.1 Severity: normal Tags: patch pending Dear maintainer, I've prepared an NMU for shogun (versioned as 3.2.0-7.2) and uploaded it to DELAYED/1. Please feel free to tell me if I

Bug#759794: insighttoolkit4: FTBFS on amd64 with ENOSPC

2014-08-31 Thread Gilles Filippini
Kurt Roeckx a écrit , Le 30/08/2014 22:32: On Sat, Aug 30, 2014 at 08:10:41PM +0200, Philipp Kern wrote: On Sat, Aug 30, 2014 at 03:34:32PM +0200, Gilles Filippini wrote: insighttoolkit4 repeatedly FTBFS on amd64 [1] because of ENOSPC. A manual build on porterbox barriere.debian.org reported

Bug#759929: shouldn't libhdf5.so still be avail and managed via alternatives

2014-08-31 Thread Gilles Filippini
Hi Yaroslav, Yaroslav Halchenko a écrit , Le 31/08/2014 02:17: both ants and nifti2dicom (and probably others) recent FTBFS are due to recentish upload of hdf5 1.8.13+docs-8 which was previously only in experimental after its big RF in (1.8.13+docs-1) which stopped providing

Bug#759929: shouldn't libhdf5.so still be avail and managed via alternatives

2014-08-31 Thread Gilles Filippini
Gilles Filippini a écrit , Le 31/08/2014 11:04: Hi Yaroslav, Yaroslav Halchenko a écrit , Le 31/08/2014 02:17: both ants and nifti2dicom (and probably others) recent FTBFS are due to recentish upload of hdf5 1.8.13+docs-8 which was previously only in experimental after its big RF

Bug#759929: shouldn't libhdf5.so still be avail and managed via alternatives

2014-08-31 Thread Gilles Filippini
Control: block -1 by 759794 Gilles Filippini a écrit , Le 31/08/2014 12:59: Gilles Filippini a écrit , Le 31/08/2014 11:04: Hi Yaroslav, Yaroslav Halchenko a écrit , Le 31/08/2014 02:17: both ants and nifti2dicom (and probably others) recent FTBFS are due to recentish upload of hdf5 1.8.13

Bug#759558: closed by Matthias Klose d...@debian.org (Bug#759558: fixed in gcc-4.9 4.9.1-10)

2014-08-31 Thread Gilles Filippini
Control: reopen -1 Hi, A couple of symlinks are still broken in 4.9.1-10: $ find /usr/lib/jvm/java-1.5.0-gcj-4.9-kfreebsd-amd64/ -type l -xtype l -ls 26864550 lrwxr-xr-x 1 root root 62 Aug 31 03:22 /usr/lib/jvm/java-1.5.0-gcj-4.9-kfreebsd-amd64/include/linux/jni_md.h -

Bug#760120: shogun: diff for NMU version 3.2.0-7.2

2014-08-31 Thread Gilles Filippini
instead of clang-3.4 +/usr/bin/clang is now provided by clang since co-installability of +clang-* packages. + * On kfreebsd-i386 force doxygen to run dot sequentialy to workaround +a not yet explained dot process hanging. + + -- Gilles Filippini p...@debian.org Sun, 31 Aug 2014 18:11:41

Bug#759790: meep: Randomly FTBFS on slow archs because of sbuild inactivity walltime

2014-08-30 Thread Gilles Filippini
walltime on slow +archs: new patch show-test-logs.patch plus override_dh_auto_test. + + -- Gilles Filippini p...@barriere.debian.org Sat, 30 Aug 2014 07:57:29 + + meep (1.2.1-2) unstable; urgency=medium * Support hdf5 1.8.13 new packaging layout. (Closes: #756679) diff -Nru meep-1.2.1

Bug#759794: insighttoolkit4: FTBFS on amd64 with ENOSPC

2014-08-30 Thread Gilles Filippini
Source: insighttoolkit4 Version: 4.6.0-3 Severity: serious Justification: FTBFS on amd64 -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, insighttoolkit4 repeatedly FTBFS on amd64 [1] because of ENOSPC. A manual build on porterbox barriere.debian.org reported a need of ~44GB while it failed

Bug#759790: meep: Randomly FTBFS on slow archs because of sbuild inactivity walltime

2014-08-30 Thread Gilles Filippini
On Sat, 30 Aug 2014 14:17:12 +0200 Gilles Filippini p...@debian.org wrote: Source: meep Version: 1.2.1-2 Severity: serious Tags: patch Justification: randomly FTBFS Hi, On slow archs meep has to be given back several times because of sbuild inactivity walltime being triggered

Bug#759663: octave: FTBFS on mips - Please add mips to NO_JDK_ARCHS

2014-08-29 Thread Gilles Filippini
Source: octave Version: 3.6.4-4 Severity: serious Justification: FTBFS on mips (but built successfully in the past) -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, As you already know octave has been binNMUed for the ongoing hdf5 transition. Unfortunately it FTBFS on mips [1] with:

Bug#759558: gcj-4.9-jdk: broken symlinks for j{awt,ni}{,_md}.h

2014-08-29 Thread Gilles Filippini
On Fri, 29 Aug 2014 00:30:56 +0200 Matthias Klose d...@debian.org wrote: Am 28.08.2014 um 18:08 schrieb Steven Chamberlain: reassign 759558 gcj-4.9-jdk found 759558 gcc-4.9/4.9.1-9 thanks gcj-4.9-jdk isn't a source package, so the BTS seems a little confused about who to mail about

Bug#759558: gcj-4.9-jdk: break FindJNI.cmake macro, causing other packages (at least vtk6) to FTBFS

2014-08-28 Thread Gilles Filippini
Source: gcj-4.9-jdk Version: 4.9.1-9 Severity: serious Justification: Make vtk6 FTBFS on kfreebsd-* -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The last upload of gcj-4.9-jdk breaks the FindJNI.cmake macro, which worked correctly with release 4.9.1-8. This problem was detected with a

Bug#759558: gcj-4.9-jdk: break FindJNI.cmake macro, causing other packages (at least vtk6) to FTBFS

2014-08-28 Thread Gilles Filippini
Control: retitle -1 gcj-4.9-jdk: broken symlinks for j{awt,ni}{,_md}.h On Thu, 28 Aug 2014 15:38:22 +0200 Gilles Filippini p...@debian.org wrote: Source: gcj-4.9-jdk Version: 4.9.1-9 Severity: serious Justification: Make vtk6 FTBFS on kfreebsd-* -BEGIN PGP SIGNED MESSAGE- Hash

Bug#759558: gcj-4.9-jdk: broken symlinks for j{awt,ni}{,_md}.h

2014-08-28 Thread Gilles Filippini
Putting debian@bsd in the loop as adviced by KiBi, because (gcj-4.9-jdk == default-jdk) on kfreebsd-*. Thanks, _g. On Thu, 28 Aug 2014 17:15:29 +0200 Gilles Filippini p...@debian.org wrote: On Thu, 28 Aug 2014 15:38:22 +0200 Gilles Filippini p...@debian.org wrote: Source: gcj-4.9-jdk

Bug#758009: shogun: diff for NMU version 3.2.0-7.1

2014-08-27 Thread Gilles Filippini
. + * Build-Depends: libjson-c-dev instead of libjson-c2-dev | libjson0-dev +(closes: #758009). + + -- Gilles Filippini p...@debian.org Wed, 27 Aug 2014 10:33:25 +0200 + shogun (3.2.0-7) unstable; urgency=low * Build depend on libjson-c2-dev instead of libjson-c-dev. diff -Nru shogun-3.2.0

Bug#759275: feel++: FTBFS - /usr/bin/clang++ not found (should be clang++-3.4)

2014-08-27 Thread Gilles Filippini
Hi Christophe, Any chance to have this fixed soon? This FTBFS bug is a blocker for the ongoing hfd5 transition. If you're busy on other stuff I can NMU. Thanks in advance, _g. On Tue, 26 Aug 2014 01:35:05 +0200 Christophe Prud'homme prudho...@unistra.fr wrote: excellent ! thanks for the news

Bug#755539: transition: hdf5

2014-08-26 Thread Gilles Filippini
Emilio Pozuelo Monfort a écrit , Le 26/08/2014 22:25: Control: tags -1 confirmed On 21/07/14 23:59, Gilles Filippini wrote: The last hdf5 release package in experimental (1.8.13+docs-2) introduced a soname bump (7 - 8) due to the MPIPOSIX API removal, plus significant path changes to allow

Bug#755539: transition: hdf5

2014-08-22 Thread Gilles Filippini
Gilles Filippini a écrit , Le 20/08/2014 19:50: Gilles Filippini a écrit , Le 15/08/2014 20:59: = Package ready = cmor flann gnuplot-iostream gpiv gpivtools magics++ octave-bim octave-msh pktools pygpiv python-shogun syrthes vtk = Useless build depends on hdf5 (package ready

Bug#758730: mapsembler2: please support hdf5 1.8.13 new packaging layout

2014-08-20 Thread Gilles Filippini
+0200 @@ -1,3 +1,11 @@ +mapsembler2 (2.2.1+dfsg-2.1) unstable; urgency=medium + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout. + * Fix FTBFS due to broken help2man call in debian/rules. + + -- Gilles Filippini p...@debian.org Wed, 20 Aug 2014 12:21:26 +0200

Bug#755539: transition: hdf5

2014-08-20 Thread Gilles Filippini
Gilles Filippini a écrit , Le 15/08/2014 20:59: = Package ready = cmor flann gnuplot-iostream gpiv gpivtools magics++ octave-bim octave-msh pktools pygpiv python-shogun syrthes vtk = Useless build depends on hdf5 (package ready anyway) = getdp #755973

Bug#758193: octave: FTBFS on s390x: panic: Segmentation fault -- stopping myself...

2014-08-15 Thread Gilles Filippini
Source: octave Version: 3.8.2-1 Severity: serious Justification: FTBFS on s390x User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, The last upload of octave FTBFS on s390x with a segfault during the test step:

Bug#755539: transition: hdf5

2014-08-15 Thread Gilles Filippini
Hi, Gilles Filippini a écrit , Le 01/08/2014 02:38: Emilio Pozuelo Monfort a écrit , Le 31/07/2014 00:34: To be honest, the big number of packages that need sourceful uploads concerns me, this close to the freeze. Other RT members have expressed me their concern as well. Can't you find

Bug#756689: [pkg-octave/master] Support hdf5 1.8.13 new packaging layout.

2014-08-14 Thread Gilles Filippini
tag 756689 pending thanks Date: Thu Aug 14 12:10:05 2014 +0200 Author: Gilles Filippini p...@debian.org Commit ID: bbe9c8656e0691a89978ef41ac6ef1b4e5f70134 Commit URL: http://anonscm.debian.org/gitweb/?p=pkg-octave/octave.git;a=commitdiff;h=bbe9c8656e0691a89978ef41ac6ef1b4e5f70134 Patch URL

Bug#758058: RM: jhdf [kfreebsd-amd64 kfreebsd-i386 sparc] -- ANAIS; Built erroneously against java 1.5 because of wrong epoch in versioned Build-Depends: default-jdk (= 1:1.6)

2014-08-14 Thread Gilles Filippini
Le 2014-08-14 14:06, Scott Kitterman a écrit : On Wed, 13 Aug 2014 22:07:28 +0200 (CEST) Gilles Filippini p...@debian.org wrote: Package: ftp.debian.org Severity: normal User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, jhdf had an explicit

Bug#757581: pytables: FTBFS on s390x

2014-08-14 Thread Gilles Filippini
Control: usertag -1 HDF5-transition Hi Antonio, On Sun, 10 Aug 2014 08:09:54 +0200 Antonio Valentino antonio.valent...@tiscali.it wrote: The problem seems to be related to the lz4 compressor. I am investigating it. Any news about this bug? This is the last blocker for the upcoming HDF5

Bug#757581: pytables: FTBFS on s390x

2014-08-14 Thread Gilles Filippini
Antonio Valentino a écrit , Le 14/08/2014 20:21: Hi Gilles, Il 14/08/2014 19:28, Gilles Filippini ha scritto: Control: usertag -1 HDF5-transition Hi Antonio, On Sun, 10 Aug 2014 08:09:54 +0200 Antonio Valentino antonio.valent...@tiscali.it wrote: The problem seems to be related

Bug#757979: pktools: FTBFS on arm*: error: invalid cast from type 'va_list {aka __va_list}' to type 'const unsigned int*'

2014-08-13 Thread Gilles Filippini
Control: severity -1 important Sebastiaan Couwenberg a écrit , Le 13/08/2014 15:08: Control: tags -1 pending Hi Gilles, On 08/13/2014 01:59 AM, Gilles Filippini wrote: This is the very same error fixed 4 years ago in the package libfann for which a patch was created: http

Bug#757163: jhdf: fails to build on kfreebsd

2014-08-13 Thread Gilles Filippini
Sebastian Ramacher a écrit , Le 13/08/2014 01:46: Hi On 2014-08-13 01:23:06, Gilles Filippini wrote: On Tue, 5 Aug 2014 22:57:27 +0200 Sebastian Ramacher sramac...@debian.org wrote: Source: jhdf Version: 2.9-2 Severity: serious Justification: fails to build from source (but built

Bug#758058: RM: jhdf [kfreebsd-amd64 kfreebsd-i386 sparc] -- ANAIS; Built erroneously against java 1.5 because of wrong epoch in versioned Build-Depends: default-jdk (= 1:1.6)

2014-08-13 Thread Gilles Filippini
Package: ftp.debian.org Severity: normal User: p...@debian.org Usertags: HDF5-transition -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, jhdf had an explicit Build-Depends: default-jdk (= 1:1.6). But because on an epoch bump (1 - 2) in the version of default-jdk, the package was built

Bug#757163: jhdf: fails to build on kfreebsd

2014-08-12 Thread Gilles Filippini
Hi, On Tue, 5 Aug 2014 22:57:27 +0200 Sebastian Ramacher sramac...@debian.org wrote: Source: jhdf Version: 2.9-2 Severity: serious Justification: fails to build from source (but built successfully in the past) jhdf wasn't expected to build on kfreebsd-* because of the versioned Build-depends

Bug#757979: pktools: FTBFS on arm*: error: invalid cast from type 'va_list {aka __va_list}' to type 'const unsigned int*'

2014-08-12 Thread Gilles Filippini
Source: pktools Version: 2.5.2+20140505-2 Severity: serious Tags: patch Justification: FTBFS on armel and armhf -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Hi, pktools FTBFS on armel and armhf: In file included from pkann.cc:32:0: .../../src/algorithms/myfann_cpp.h: In member function 'bool

Bug#756689: [Pkg-octave-devel] Bug#756689: octave: [hdf5 transition] please support hdf5 1.8.13 new packaging layout

2014-08-11 Thread Gilles Filippini
Gilles Filippini a écrit , Le 10/08/2014 10:37: Gilles Filippini a écrit , Le 09/08/2014 17:57: Hi Mike, Sorry about the late answer. Connectivity is flaky on my holidays place. Mike Miller a écrit , Le 08/08/2014 16:22: On Wed, Aug 6, 2014 at 08:03:14 +0200, Gilles Filippini wrote: Thanks

Bug#756689: [Pkg-octave-devel] Bug#756689: octave: [hdf5 transition] please support hdf5 1.8.13 new packaging layout

2014-08-10 Thread Gilles Filippini
Gilles Filippini a écrit , Le 09/08/2014 17:57: Hi Mike, Sorry about the late answer. Connectivity is flaky on my holidays place. Mike Miller a écrit , Le 08/08/2014 16:22: On Wed, Aug 6, 2014 at 08:03:14 +0200, Gilles Filippini wrote: Thanks for that. In the mean time is it possible

Bug#756689: [Pkg-octave-devel] Bug#756689: octave: [hdf5 transition] please support hdf5 1.8.13 new packaging layout

2014-08-09 Thread Gilles Filippini
Hi Mike, Sorry about the late answer. Connectivity is flaky on my holidays place. Mike Miller a écrit , Le 08/08/2014 16:22: On Wed, Aug 6, 2014 at 08:03:14 +0200, Gilles Filippini wrote: Thanks for that. In the mean time is it possible for you to upload a fixed octave package to unstable

Bug#756707: pktools: diff for NMU version 2.5.2+20140505-1.1

2014-08-07 Thread Gilles Filippini
Hi Sebastian, Sebastiaan Couwenberg a écrit , Le 07/08/2014 12:28: Hi Gilles, On 08/07/2014 01:03 AM, Gilles Filippini wrote: I've prepared an NMU for pktools (versioned as 2.5.2+20140505-1.1) and uploaded it to DELAYED/5. Please feel free to tell me if I should delay it longer. Please

Bug#756689: [Pkg-octave-devel] Bug#756689: octave: [hdf5 transition] please support hdf5 1.8.13 new packaging layout

2014-08-06 Thread Gilles Filippini
Hi Mike, Mike Miller a écrit , Le 06/08/2014 04:23: On Mon, Aug 4, 2014 at 10:40:52 -0400, Mike Miller wrote: On Mon, Aug 4, 2014 at 11:54:02 +, Gilles Filippini wrote: These patches aren't Debian-specific. They help when HDF5 is installed into a non standard path. Some similar changes

Bug#756676: libpdl-io-hdf5-perl: diff for NMU version 0.63-3.1

2014-08-06 Thread Gilles Filippini
=medium + + * Non-maintainer upload. + * New patch support-hdf5-1.8.13.patch: support hdf5 1.8.13 new +packaging layout (closes: #756676, #729343). + + -- Gilles Filippini p...@debian.org Wed, 06 Aug 2014 08:58:17 +0200 + libpdl-io-hdf5-perl (0.63-3) unstable; urgency=low * rebuild

Bug#756472: gmsh: diff for NMU version 2.8.5+dfsg-1.1

2014-08-06 Thread Gilles Filippini
fix-cmake-hdf5.patch to support hdf5 1.8.13 new packaging +layout (closes: #756472). + + -- Gilles Filippini p...@debian.org Fri, 25 Jul 2014 00:43:50 +0200 + gmsh (2.8.5+dfsg-1) unstable; urgency=medium * [6fbfd92] Add Files-Excluded into d/copyright diff -Nru gmsh-2.8.5+dfsg/debian

Bug#756471: flann: diff for NMU version 1.8.4-4.1

2014-08-06 Thread Gilles Filippini
-cmake-hdf5.patch to support hdf5 1.8.13 new packaging +layout (closes: #756471). + + -- Gilles Filippini p...@debian.org Wed, 06 Aug 2014 08:33:53 +0200 + flann (1.8.4-4) unstable; urgency=low * Bump Std-Vers to 3.9.5, no changes needed. Run w-a-s for cleanup. diff -Nru flann-1.8.4/debian

Bug#756687: netcdf: diff for NMU version 1:4.1.3-7.1

2014-08-06 Thread Gilles Filippini
). + + -- Gilles Filippini p...@debian.org Thu, 24 Jul 2014 16:11:22 +0200 + netcdf (1:4.1.3-7) unstable; urgency=low * Team upload diff -Nru netcdf-4.1.3/debian/rules netcdf-4.1.3/debian/rules --- netcdf-4.1.3/debian/rules 2013-10-09 14:35:06.0 +0200 +++ netcdf-4.1.3/debian/rules 2014-08-06

Bug#756674: libgpiv: diff for NMU version 0.6.1-4.1

2014-08-06 Thread Gilles Filippini
/debian/changelog +++ libgpiv-0.6.1/debian/changelog @@ -1,3 +1,10 @@ +libgpiv (0.6.1-4.1) unstable; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout (closes: #756674). + + -- Gilles Filippini p...@debian.org Wed, 06 Aug 2014 16:54:12 +0200 + libgpiv (0.6.1-4

Bug#756697: salome-kernel: diff for NMU version 6.5.0-8.1

2014-08-06 Thread Gilles Filippini
--- salome-kernel-6.5.0/debian/changelog +++ salome-kernel-6.5.0/debian/changelog @@ -1,3 +1,10 @@ +salome-kernel (6.5.0-8.1) unstable; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout (closes: #756697). + + -- Gilles Filippini p...@debian.org Wed, 06 Aug 2014

Bug#756663: gpiv: diff for NMU version 0.6.1-2.3

2014-08-06 Thread Gilles Filippini
/changelog +++ gpiv-0.6.1/debian/changelog @@ -1,3 +1,10 @@ +gpiv (0.6.1-2.3) unstable; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout (closes: #756663). + + -- Gilles Filippini p...@debian.org Wed, 06 Aug 2014 17:14:14 +0200 + gpiv (0.6.1-2.2) unstable; urgency

Bug#656665: gpivtools: diff for NMU version 0.6.0-3.1

2014-08-06 Thread Gilles Filippini
layout (closes: #656665). + + -- Gilles Filippini p...@debian.org Wed, 06 Aug 2014 17:24:43 +0200 + gpivtools (0.6.0-3) unstable; urgency=low [Gerfried Fuchs] diff -Nru gpivtools-0.6.0/debian/rules gpivtools-0.6.0/debian/rules --- gpivtools-0.6.0/debian/rules2012-03-09 11:50:10.0

Bug#756692: pygpiv: diff for NMU version 2.0.0-4.2

2014-08-06 Thread Gilles Filippini
). + + -- Gilles Filippini p...@debian.org Wed, 06 Aug 2014 17:42:06 +0200 + pygpiv (2.0.0-4.1) unstable; urgency=low * Non-maintainer upload. diff -Nru pygpiv-2.0.0/debian/rules pygpiv-2.0.0/debian/rules --- pygpiv-2.0.0/debian/rules 2012-05-18 11:00:24.0 +0200 +++ pygpiv-2.0.0/debian/rules

Bug#756670: h5utils: diff for NMU version 1.12.1-2.1

2014-08-06 Thread Gilles Filippini
; urgency=low + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout (closes: #756670). + + -- Gilles Filippini p...@debian.org Wed, 06 Aug 2014 17:44:53 +0200 + h5utils (1.12.1-2) unstable; urgency=low * Fixed a FTBS with libpng 1.5: patch png1.5. -- To UNSUBSCRIBE, email

Bug#756678: med-fichier: diff for NMU version 3.0.6-5.1

2014-08-06 Thread Gilles Filippini
: #756678). + + -- Gilles Filippini p...@debian.org Wed, 06 Aug 2014 17:56:12 +0200 + med-fichier (3.0.6-5) unstable; urgency=medium * [e70adff] Fix autotests. diff -Nru med-fichier-3.0.6/debian/rules med-fichier-3.0.6/debian/rules --- med-fichier-3.0.6/debian/rules 2014-04-24 23:49

Bug#756690: petsc: diff for NMU version 3.4.2.dfsg1-8.1

2014-08-06 Thread Gilles Filippini
: #756690). + + -- Gilles Filippini p...@debian.org Wed, 06 Aug 2014 18:00:31 +0200 + petsc (3.4.2.dfsg1-8) unstable; urgency=medium * Team upload. diff -Nru petsc-3.4.2.dfsg1/debian/rules petsc-3.4.2.dfsg1/debian/rules --- petsc-3.4.2.dfsg1/debian/rules 2014-03-04 21:09:33.0 +0100

Bug#756700: tessa: diff for NMU version 0.3.1-6.1

2014-08-06 Thread Gilles Filippini
/changelog +++ tessa-0.3.1/debian/changelog @@ -1,3 +1,10 @@ +tessa (0.3.1-6.1) unstable; urgency=medium + + * Non-maintainer upload. + * Support hdf5 1.8.13 new packaging layout (closes: #756700). + + -- Gilles Filippini p...@debian.org Wed, 06 Aug 2014 18:59:14 +0200 + tessa (0.3.1-6) unstable

Bug#756435: feel++: add explicit build dependency on libhdf5-mpi-dev

2014-08-06 Thread Gilles Filippini
. Many thanks in advance, _g. On Tue, Jul 29, 2014 at 10:10 PM, Gilles Filippini p...@debian.org wrote: Source: feel++ Version: 1:0.98.0-final-1 Severity: normal Tags: patch Hi, The source package feel++ indirectly build-depends on libhdf5-mpi-dev through libslepc3.4.2-dev

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