Bug#1058489: umap-learn: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: umap-learn Version: 0.5.4+dfsg-1 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is

Bug#1058488: spopt: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: spopt Version: 0.5.0-4 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is expected

Bug#1058487: resampy: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: resampy Version: 0.4.2+ds-3 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is expe

Bug#1058486: python-xarray: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: python-xarray Version: 2023.11.0-2 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support

Bug#1058485: python-sparse: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: python-sparse Version: 0.14.0-1 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is

Bug#1058484: python-qmix: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: python-qmix Version: 1.0.6-5 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is exp

Bug#1058483: python-pynndescent: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: python-pynndescent Version: 0.5.8-2 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support

Bug#1058482: python-loompy: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: python-loompy Version: 3.0.7+dfsg-2 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support

Bug#1058481: python-epimodels: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: python-epimodels Version: 0.4.0-2 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support i

Bug#1058480: python-disptrans: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: python-disptrans Version: 0.0.1-2 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support i

Bug#1058479: python-cogent: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: python-cogent Version: 2023.2.12a1+dfsg-4 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although s

Bug#1058478: pynpoint: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: pynpoint Version: 0.11.0-1 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is expec

Bug#1058477: poliastro: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: poliastro Version: 0.17.0-2 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is expe

Bug#1058476: libpysal: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: libpysal Version: 4.9.2-1 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is expect

Bug#1058475: hyperspy: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: hyperspy Version: 1.7.3-1 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is expect

Bug#1058474: gubbins: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: gubbins Version: 3.3.0-3 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is expecte

Bug#1058473: genx: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: genx Version: 3.6.22-2 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is expected

Bug#1058472: ffcv: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: ffcv Version: 1.0.0-2 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is expected i

Bug#1058471: esda: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: esda Version: 2.5.1-1 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is expected i

Bug#1058470: epigrass: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: epigrass Version: 3.0.3+dfsg-2 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is e

Bug#1058469: bioxtasraw: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: bioxtasraw Version: 2.2.1-1 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is expe

Bug#1058468: pandas: please (temporarily) drop python3-numba dependencies

2023-12-12 Thread Graham Inggs
Source: pandas Version: 1.5.3+dfsg-9 Severity: important User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer Your package has a dependency, build-dependency or autopkgtest dependency on python3-numba. Numba is currently not compatible with Python 3.12, although support is exp

Bug#1058456: numpy: lib/tests/test_format.py seems to use a lot of memory with Python 3.12

2023-12-12 Thread Graham Inggs
Source: numpy Version: 1:1.24.2-2 Severity: important User: debian...@lists.debian.org Usertags: regression Hi Maintainer Numpy's autopkgtests fail on some architectures, e.g. arm64 [1], when tested with Python 3.12 (i.e. with python3-defaults 3.11.6-1 from unstable). I've copied what I hope is

Bug#1058454: prody: autopkgtest regression on i386

2023-12-12 Thread Graham Inggs
Source: prody Version: 2.3.1+dfsg-3 Severity: serious Tags: sid trixie User: debian...@lists.debian.org Usertags: regression Hi Maintainer The autopkgtest of prody 2.3.1+dfsg-3 is failing when tested with numpy 1:1.24.2-2 [1]. I've copied what I hope is the relevant part of the log below. Regar

Bug#1058047: gammapy: FTBFS with Python 3.12

2023-12-11 Thread Graham Inggs
Source: gammapy Version: 1.1-3 Severity: serious Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer gammapy FTBFS [1] with Python 3.12 as a supported version. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://buildd.debi

Bug#1058040: pymatgen: FTBFS with Python 3.12

2023-12-11 Thread Graham Inggs
Source: pymatgen Version: 2023.06.23+dfsg1-2 Severity: serious Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer pymatgen FTBFS [1] with Python 3.12 as a supported version. I've copied what I hope is the relevant part of the log below. Regards Graham [1] http

Bug#1058039: cctbx: FTBFS with Python 3.12

2023-12-11 Thread Graham Inggs
Source: cctbx Version: 2022.9+ds2+~3.11.2+ds1-6 Severity: serious Tags: ftbfs sid trixie User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer cctbx FTBFS [1] with Python 3.12 as a supported version. I've copied what I hope is the relevant part of the log below. Regards Graha

Bug#1056047: python-skbio ftbfs with Python 3.12 (and cython 3.0.5)

2023-12-11 Thread Graham Inggs
Control: severity -1 important This was worked around in 0.5.8-4.1. Downgrading severity for now.

Bug#1058032: python-grpc-tools: FTBFS with Python 3.12

2023-12-11 Thread Graham Inggs
Source: python-grpc-tools Version: 1.14.1-6 Severity: serious Tags: ftbfs sid trixie User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer python-grpc-tools FTBFS [1] with Python 3.12 as a supported version. I've copied what I hope is the relevant part of the log below. Regards

Bug#1058031: pygame: FTBFS with Python 3.12

2023-12-11 Thread Graham Inggs
Source: pygame Version: 2.5.2-1 Severity: serious Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer pygame FTBFS [1] with Python 3.12 as a supported version. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://buildd.debi

Bug#1058030: pyferret: b-d on python3-all-dev, but not built for all supported Python3 versions

2023-12-11 Thread Graham Inggs
Source: pyferret Version: 7.6.5-4 Severity: serious Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.12 python3-all-dev Hi Maintainer This package build-depends on python3-all-dev, but does not build extensions/libraries for all supported python3 versions. This is seen on the t

Bug#1058027: pybj: FTBFS with Python 3.12

2023-12-11 Thread Graham Inggs
Source: pybj Version: 0.2.6-1 Severity: serious Tags: ftbfs sid trixie User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer pybj FTBFS [1] with Python 3.12 as a supported version. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://build

Bug#1057762: cython: Move cython 3.0 from experimental to unstable

2023-12-10 Thread Graham Inggs
Hi Bas On Sun, 10 Dec 2023 at 16:16, Sebastiaan Couwenberg wrote: > FWIW, all except two hopelessly broken packages now have patches to use > cython3-legacy for the time being. Thanks for your work on this! Regards Graham

Bug#1057762: cython: Move cython 3.0 from experimental to unstable

2023-12-09 Thread Graham Inggs
For reference, there are still quite a number of packages (84 unclassified, right now) [1], that FTBFS with cython 3.0. [1] https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=cython3;users=debian-pyt...@lists.debian.org

Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)

2023-12-07 Thread Graham Inggs
Hi Andreas On Sun, 3 Dec 2023 at 07:21, Andreas Tille wrote: > I have no idea how to work around this. I found a workaround; demote pandoc from a Depends to a Recommends in the r-cran-rmarkdown package. It seems that pandoc is not used for building, at least for r-bioc-biovizbase, -degnorm, -io

Bug#1055801: pandas: test failures with Python 3.12

2023-12-07 Thread Graham Inggs
Hi Rebecca On Thu, 7 Dec 2023 at 07:03, Rebecca N. Palmer wrote: > If they are all crashes rather than wrong answers (which I think they > are), I intend to ignore them for now to unblock this, but still > consider them bugs. That sounds good, thank you! Regards Graham

Bug#1055801: pandas: test failures with Python 3.12

2023-12-05 Thread Graham Inggs
Control: severity -1 serious Control: tags -1 + ftbfs Hi Rebecca We've reached the point in adding Python 3.12 as a supported version [1] where these test failures should easily be reproducible in unstable now. Regards Graham [1] https://lists.debian.org/debian-python/2023/12/msg0.html

Bug#1055085: waiting for 3.12.1

2023-12-04 Thread Graham Inggs
Control: tags -1 + confirmed On Thu, 30 Nov 2023 at 10:03, Matthias Klose wrote: > > wait until 3.12.1 is in the archive. 3.12.0+ isn't well handled as a > version by some third party libraries. binNMUs are now in progress with python3.12 3.12.0-7 in unstable. python3.12 (3.12.0-7) unstable; ur

Bug#1057412: pynormaliz: FTBFS in testing and unstable

2023-12-04 Thread Graham Inggs
Source: pynormaliz Version: 2.18+ds-1 Severity: serious Tags: ftbfs Hi Maintainer As can be seen in reproducible builds [1], pynormaliz currently FTBFS in testing and unstable. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://tests.reproducible-builds.

Bug#1057410: pymupdf: FTBFS in testing and unstable

2023-12-04 Thread Graham Inggs
Source: pymupdf Version: 1.22.5+ds1-1 Severity: serious Tags: ftbfs Hi Maintainer As can be seen in reproducible builds [1], pymupdf currently FTBFS in testing and unstable. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://tests.reproducible-builds.org

Bug#1057409: cctools: b-d on python3-all-dev, but not built for all supported Python3 versions

2023-12-04 Thread Graham Inggs
Source: cctools Version: 9.9-3 Severity: serious Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.10 python3-all-dev Hi Maintainer This package build-depends on python3-all-dev, but does not build extensions/libraries for all supported python3 versions. This is seen on the tran

Bug#1057388: unrardll: needs binary upload to add Python 3.12 as supported

2023-12-04 Thread Graham Inggs
Source: unrardll Version: 0.1.7-1 Severity: serious Tags: ftbfs Hi Maintainer The package unrardll requires a binary upload since it is in contrib and cannot be built on the buildds [1]. Please upload the binary package python3-unrardll_0.1.7-1+b1_amd64.deb to the archive. There is no need for

Bug#1057383: mapclassify: Build-Depends on python3-libpysal which is not in testing

2023-12-04 Thread Graham Inggs
Source: mapclassify Version: 2.6.1-2 Severity: serious Tags: ftbfs Hi Maintainer mapclassify has a build-dependency on python3-libpysal which is no longer in testing. Please drop this build-dependency or help get python3-libpysal back into testing. In addition, if any of mapclassify's build-dep

Bug#1057203: r-bioc-rhdf5filters: missing build-dependency on big-endian architectures

2023-12-03 Thread Graham Inggs
Control: tags -1 + patch Hi Andreas On Sun, 3 Dec 2023 at 09:31, Andreas Tille wrote: > I confirm this might be a fast solution. However, this would mean to > restrict the functionality of the package for architectures where the > package is used just to work around a compilation error where th

Bug#1054657: Transition seems to be blocked (Was: Bug#1054657: transition: r-bioc-biocgenerics)

2023-12-03 Thread Graham Inggs
Hi Andreas On Sun, 3 Dec 2023 at 07:21, Andreas Tille wrote: > Charles Plessy and I uploaded r-bioc-* packages until level 11. > Unfortunately building of some packages seems to be blocked for > > A: some pandoc dependency reason > pandoc depends on missing: > - pandoc-data:amd64

Bug#1057203: r-bioc-rhdf5filters: missing build-dependency on big-endian architectures

2023-12-03 Thread Graham Inggs
Hi Andreas I see the following in #1042548 [1]: > On Sun, 30 Jul 2023 10:02:08 +0530 Nilesh Patra wrote: > > New version of rhdf5filters enables vbz and zstd compression as well but > > these have been ignored with a debian specific patch. As a result it > > enables only lz, blosc and bzip2. > >

Bug#1057203: r-bioc-rhdf5filters: missing build-dependency on big-endian architectures

2023-12-03 Thread Graham Inggs
Hi Andreas On Sun, 3 Dec 2023 at 06:48, Andreas Tille wrote: > I have a totally different question concerning the transition. I see you have also asked this in #1054657 [1]. That is a better place. Regards Graham [1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1054657#241

Bug#1057203: r-bioc-rhdf5filters: missing build-dependency on big-endian architectures

2023-12-01 Thread Graham Inggs
Source: r-bioc-rhdf5filters Version: 1.12.1+dfsg2-1 Severity: serious Tags: ftbfs X-Debbugs-Cc: debian-s...@lists.debian.org Hi Maintainer A commit on 2023-08-01 [1] added a build-dependency on libvbz-hdf-plugin-dev, which is not available on big-endian architectures, and prevents r-bioc-rhdf5fil

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-30 Thread Graham Inggs
Hi Dirk On Thu, 30 Nov 2023 at 00:51, Dirk Eddelbuettel wrote: > Ping squared. > > If I don't hear from you I may just close this. I believe this (non-, to me) > issue has been taken care of. If you think I am wrong please let me know. I closed it on 2023-11-24 [1]. Where do you see it still o

Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2)

2023-11-29 Thread Graham Inggs
Control: tags -1 + confirmed Hi Andreas On Tue, 28 Nov 2023 at 13:50, Andreas Tille wrote: > Looks good. So if I understood correctly we are now rather waiting for > some infrastructure issues to start the transition and we should simply > sit-n-wait for the green light, right? Please go ahead

Bug#1057081: mumps: FTBFS with LTO (link time optimization) enabled

2023-11-29 Thread Graham Inggs
Source: mumps Version: 5.6.2-1 Severity: minor User: debian-...@lists.debian.org Usertags: ftbfs-lto Hi Maintainer MUMPS currently fails to build (at least on the amd64 architecture) with link time optimizations enabled. For a background for LTO please see https://wiki.debian.org/ToolChain/LTO

Bug#1054657: Transition issue for r-cran-rstanarm (Was: Bug#1055922: rmatrix: ABI change in Matrix 1.6-2)

2023-11-28 Thread Graham Inggs
Hi All I'm catching up after some AFK time, so I will just fill in some details where I can. On Tue, 28 Nov 2023 at 08:31, Paul Gevers wrote: > > I have no idea why r-cran-seurat is not profiting from reduced waiting > > time for the transition. > > Because its tests fail on armel. The reduction

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-21 Thread Graham Inggs
Hi Andreas On Mon, 20 Nov 2023 at 13:07, Andreas Tille wrote: > Since I have no idea what the failures in r-cran-seurat test > log[6] mean I would prefer to wait until we can upload the latest > version. > > > [6] https://ci.debian.net/packages/r/r-cran-seurat/unstable/amd64/40043272/ I had a lo

Bug#1056047: python-skbio ftbfs with Python 3.12 (and cython 3.0.5)

2023-11-20 Thread Graham Inggs
With cython 0.29, there are test failures, as can be seen in the upstream bug report: https://github.com/scikit-bio/scikit-bio/issues/1897

Bug#1056323: python-biom-format: FTBFS with Python 3.12 (test failures)

2023-11-20 Thread Graham Inggs
Control: tags -1 + patch The attached patch, cherry-picked from upstream, works for me. Description: locale.format --> locale.format_string locale.format was deprecated in Python 3.7, see https://docs.python.org/3/library/locale.html#locale.format Origin: upstream, https://github.com/biocore/bio

Bug#1056323: python-biom-format: FTBFS with Python 3.12 (test failures)

2023-11-20 Thread Graham Inggs
Source: python-biom-format Version: 2.1.12-3 Severity: important Tags: ftbfs sid trixie User: debian-pyt...@lists.debian.org Usertags: python3.12 Hi Maintainer python-biom-format FTBFS with Python 3.12 as a supported version. I've copied below what I hope is the relevant part of the log. Regards

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-20 Thread Graham Inggs
Hi Andreas On Mon, 20 Nov 2023 at 06:59, Andreas Tille wrote: > > We liked the change you made to r-cran-tmb [2], as this allows the > > affected packages to be binNMU'd and gain a versioned dependency on > > r-cran-matrix. Would you please apply this to the other affected > > packages (only r-c

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-20 Thread Graham Inggs
Hi Dirk On Sun, 19 Nov 2023 at 14:59, Dirk Eddelbuettel wrote: > So it contains a patch by Mikael which had been applied _permitting Matrix > 1.6-2_ to get to CRAN. So for this particular pair it was the other way > around. Great, thanks for clearing that up. > So I leave this in your hands. I

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-19 Thread Graham Inggs
Control: tags -1 + moreinfo Hi Andreas On Mon, 13 Nov 2023 at 09:10, Andreas Tille wrote: > Thanks to the hint from Charles I found that SparseArray is not new in > Bioconductor and we can build the previous version with the current > packages in unstable which I did and uploaded to new. Thanks

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-19 Thread Graham Inggs
Hi Andreas On Sat, 18 Nov 2023 at 19:18, Andreas Tille wrote: > We need some means to follow ABI changes. In Debian we could use > something like r-matrix-abi-VERSION. Indeed, this is one solution. As you saw in [1], upstream now provide an ABI version and a way to extract it: > Matrix will co

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-19 Thread Graham Inggs
Hi Dirk On Tue, 14 Nov 2023 at 12:42, Dirk Eddelbuettel wrote: > Doesn't 'normal' do that? No, only serious and above are considered RC [1] and also for migration. This week, Paul Gevers and I spent some time discussing ways to move this transition forward. Referring back to some of your previ

Bug#1056132: skimage: FTBFS in testing and unstable

2023-11-17 Thread Graham Inggs
Source: skimage Version: 0.22.0-2 Severity: serious Tags: ftbfs Hi Maintainer As can be seen on reproducible builds [1], skimage currently FTBFS in testing and unstable. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://tests.reproducible-builds.org/deb

Bug#1055681: new upstream python is needed for Python 3.12

2023-11-14 Thread Graham Inggs
Hi Matthias Are you sure that cython 3.0.x is required for Python 3.12? The changelog from cython 0.29.36-1 has: * New upstream release. - Includes Python 3.12 support (Closes: #1004725) and upstream's changelog [1] mentions Python 3.12 a couple of times. Please also see my message [2] i

Bug#1028157: cython: please upgrade to 3.0.0 alpha

2023-11-14 Thread Graham Inggs
Hi FWIW, I recently did a test rebuild of packages in Ubuntu Mantic [1] (so packages are ~2.5 months behind unstable) against Cython 3.0.5. Of the 279 source packages I identified as having a build-dependency on src:cython, 163 built successfully, 115 FTBFS and one (qutip) FTBFS on amd64 only and

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-14 Thread Graham Inggs
Hi Dirk On Tue, 14 Nov 2023 at 12:01, Dirk Eddelbuettel wrote: > Well that seems to be a) the wrong severity and b) the wrong package. Both are correct. We do not want rmatrix to migrate and break packages in testing. However, in this case, I only set the severity to match reality; rmatrix is

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-14 Thread Graham Inggs
Source: rmatrix Version: 1.6-2-1 Severity: serious X-Debbugs-Cc: debia...@lists.debian.org Hi Dirk I'm opening this bug as a place for discussion and to track the affected packages. It can be closed once rmatrix and its reverse-dependencies are ready to migrate. I've copied your email to the de

Bug#1055848: cfgrib: autopkgtest regression

2023-11-12 Thread Graham Inggs
Source: cfgrib Version: 0.9.10.4-2 Severity: serious User: debian...@lists.debian.org Usertags: regression Hi Maintainer The upload of cfgrib 0.9.10.4-2 is failing its own autopkgtest [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://ci.debian.net/p

Bug#1055847: python-sparse: autopkgtest regression on arm64 and s390x

2023-11-12 Thread Graham Inggs
Source: python-sparse Version: 0.14.0-1 Severity: serious User: debian...@lists.debian.org Usertags: regression Hi Maintainer The upload of python-sparse 0.14.0-1 is failing its own autopkgtest on arm64 and s390x [1][2]. I've copied what I hope is the relevant part of the log below. Regards Gra

Bug#1055845: matplotlib: Build-Depends on python3-xarray which is not in testing

2023-11-12 Thread Graham Inggs
Source: matplotlib Version: 3.6.3-1 Severity: serious Tags: ftbfs Hi Maintainer matplotlib has a build-dependency on python3-xarray which is no longer in testing. Please drop this build-dependency or help get python3-xarray back into testing. Regards Graham

Bug#1055844: pandas: Build-Depends on python3-xarray which is not in testing

2023-11-12 Thread Graham Inggs
Source: pandas Version: 1.5.3+dfsg-6 Severity: serious Tags: ftbfs Hi Maintainer pandas has a build-dependency on python3-xarray which is no longer in testing. Please drop this build-dependency or help get python3-xarray back into testing. Regards Graham

Bug#1055843: python-pyproj: Build-Depends on python3-xarray which is not in testing

2023-11-12 Thread Graham Inggs
Source: python-pyproj Version: 3.6.1-1 Severity: serious Tags: ftbfs Hi Maintainer python-pyproj has a build-dependency on python3-xarray which is no longer in testing. Please drop this build-dependency or help get python3-xarray back into testing. Regards Graham

Bug#1055841: spyder-kernels: Build-Depends on python3-xarray which is not in testing

2023-11-12 Thread Graham Inggs
Source: spyder-kernels Version: 2.4.4-2 Severity: serious Tags: ftbfs Hi Maintainer spyder-kernels has a build-dependency on python3-xarray which is no longer in testing. Please drop this build-dependency or help get python3-xarray back into testing. Regards Graham

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-01 Thread Graham Inggs
HI Andreas On Sun, 29 Oct 2023 at 16:06, Andreas Tille wrote: > Sorry, my question was probably confusing. I was not talking about the > new packages. I was talking about the 170 r-bioc-* packages. If I > upload these to experimental, will it be necessary to upload these to > unstable again or

Bug#1055085: (some kind of) transition: add python3.12 as a supported python3 version

2023-10-31 Thread Graham Inggs
Hi Matthias On Tue, 31 Oct 2023 at 07:15, Matthias Klose wrote: > Please setup a tracker to add python3.12 as a supported python3 version. This > is > non-blocking, as packages can migrate on their own once built. I'm not yet > starting this, just want to have an overview of affected packages. >

Bug#1054657: transition: r-bioc-biocgenerics

2023-10-29 Thread Graham Inggs
Hi Andreas On Sun, 29 Oct 2023 at 04:33, Andreas Tille wrote: > Can you confirm that packages uploaded to experimental can be moved in > one rush from experimental to unstable without extra uploads? I don't think this has ever been possible. The packages would need to be uploaded again to unsta

Bug#1054323: r-cran-tmb: autopkgtest needs update for new version of rmatrix: Package version inconsistency detected

2023-10-29 Thread Graham Inggs
Control: found -1 1.9.6-2 > still depends on: > r-cran-matrix (>= 1.6-1.1) > > So the version is still not correct. Note that this is Depends, not Build-Depends. I found that in debian/control, r-cran-tmb has Depends: r-cran-matrix (>= 1.5-3-1~), but this is somehow replaced in the binary packag

Bug#1054657: transition: r-bioc-biocgenerics

2023-10-28 Thread Graham Inggs
Control: tags -1 + moreinfo Hi Andreas On Fri, 27 Oct 2023 at 14:03, Andreas Tille wrote: > The BioConductor transition will bump the virtual package > r-api-bioc-3.17 to r-api-bioc-3.18. > > BTW, I'm aware that a couple of r-bioc-* packages did not yet migrated > to testing due to some autopkgt

Bug#1054659: transition: utf8proc

2023-10-27 Thread Graham Inggs
Control: tags -1 confirmed Hi Mo On Fri, 27 Oct 2023 at 15:36, M. Zhou wrote: > We can start the transition for utf8proc, which recently got an > SOVERSION bump from 2 to 3. I tested the reverse dependencies > on ppc64el and all of them are fine. The results for amd64 should > be the same. Plea

Bug#1052191: unicode-data: Please update for the new 15.1 release

2023-10-23 Thread Graham Inggs
Hi Alastair On Mon, 23 Oct 2023 at 10:34, Alastair McKinstry wrote: > Apologies for not treating this properly as a transition. Changes have > been limited to adding new symbols to the set, I had not thought that > this would break dependencies. It seems that every new unicode-data upstream vers

Bug#1024824: The software outputs: "No access to printer device file"

2023-10-22 Thread Graham Inggs
Control: severity -1 normal Control: tags -1 + moreinfo The severity of this bug keeps mtink out of testing, and needs more information.

Bug#851042: molds: FTBFS: liblapacke.so: undefined reference to `sgemqr_'

2023-10-20 Thread Graham Inggs
On Wed, 18 Oct 2023 at 00:27, Santiago Vila wrote: > OTOH, if this bug is being kept open to track something > different (what Graham Inggs called "a recurring problem" > in a previous message), maybe it would make sense to > retitle at least. It seems a similar problem

Bug#1053748: satpy: autopkgtest needs update for python-xarray 2023.09.0

2023-10-10 Thread Graham Inggs
Source: satpy Version: 0.43.0-5 User: debian...@lists.debian.org Usertags: needs-update Hi Maintainer Since the upload of python-xarray 2023.09.0-1, the autopkgtests of satpy are failing [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://ci.debian.n

Bug#1053700: python-xarray: autopkgtest regression on s390x

2023-10-09 Thread Graham Inggs
Source: python-xarray Version: 2023.09.0-2 Severity: serious User: debian...@lists.debian.org Usertags: regression Hi Maintainer There are new autopkgtest failures on s390x [1] which seem to be related to endianness, dtype('>M8[ns]') vs dtype('https://ci.debian.net/packages/p/python-xarray/unstab

Bug#1015702: view3dscene: ftbfs with LTO (link time optimization) enabled

2023-09-30 Thread Graham Inggs
I don't think disabling LTO is the correct solution here. At least, view3dscene 4.2.0-2 still FTBFS in Ubuntu with: /usr/bin/ld.bfd: -f may not be used without -shared Please consider the patch that was applied in Ubuntu [1], which filters out -ffat-lto-objects from LDFLAGS. --- a/debian/rules +

Bug#1052191: unicode-data: Please update for the new 15.1 release

2023-09-27 Thread Graham Inggs
Please coordinate transitions with the release team. https://wiki.debian.org/Teams/ReleaseTeam/Transitions

Bug#967317: [Pkg-pascal-devel] Bug#967317: doublecmd: depends on deprecated GTK 2

2023-09-24 Thread Graham Inggs
Hi Bastian On Wed, 20 Sept 2023 at 13:30, Bastian Germann wrote: > Please drop doublecmd-gtk or make it a transitional package to doublecmd-qt. I'd rather not do that. doublecmd-qt does not integrate well with the default GNOME desktop. Also, per popcon [1], doublecmd-gtk has almost four times

Bug#1052241: dipy: Skip little-endian test in big-endian compiler

2023-09-24 Thread Graham Inggs
Control: found -1 1.7.0-2 Control: severity -1 serious Control: affects -1 + nipype The removal of the python3-dipy-lib s390x binary has caused nipype's autopkgtest to regress in testing [1]. I've copied what I hope is the relevant part of the log below. [1] https://ci.debian.net/packages/n/nip

Bug#1052540: setuptools: FTBFS in unstable and trixie

2023-09-24 Thread Graham Inggs
Source: setuptools Version: 68.1.2-1 Severity: serious Tags: ftbfs Hi Maintainer As per reproducible builds [1], setuptools started to FTBFS in trixie and unstable sometime around 2023-08-28. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://tests.repro

Bug#1039529: [Debian-med-packaging] Bug#1039529: Bug#1039529: Bug#1039529: sight: FTBFS: /<>/libs/io/itk/helper/ProgressItkToFw.hxx:48:5: error: ‘::Create’ has not been declared

2023-09-19 Thread Graham Inggs
Control: clone -1 -2 Control: reassign -2 src:insighttoolkit5 5.3.0-5 Hi Flavien On Mon, 18 Sept 2023 at 14:24, Flavien Bridault wrote: > > My message was maybe missed during the summer, I give a new attempt... I can > offer a hand to provide the ITK patch if that can help... Let me try clonin

Bug#1050223: RM: r-cran-rgdal/1.6-7+dfsg-1

2023-09-17 Thread Graham Inggs
Control: reopen -1 Something went wrong and r-cran-rgdal/1.6-7+dfsg-1 migrated back into testing on 2023-09-14.

Bug#1050082: octave-image: could FTBFS due to missing .oct files

2023-09-05 Thread Graham Inggs
Hi Rafael On Thu, 31 Aug 2023 at 09:04, Rafael Laboissière wrote: > Bug#1050082 has been (hopefully) fixed with the upload of octave/8.3.0-2. > Could you please confirm that this really fixes the autobuild issue in > Ubuntu? I confirm that octave-image builds successfully in Ubuntu, without need

Bug#1042005: Info received (Bug#1042005: transition: mumps hypre2.28.0 superlu combblas)

2023-09-04 Thread Graham Inggs
Hi On Thu, 31 Aug 2023 at 12:03, Sebastian Ramacher wrote: > Unfortunately trilinos is a key package and so cannot be removed without > much effort from testing to complete the transition. Can you please take > a look at fixing the current issues with trilinos? As can be seen on salsa [1], packa

Bug#1050832: sarsen: autopkgtest needs update for python-xarray 2023.08.0

2023-08-30 Thread Graham Inggs
Control: severity -1 serious Control: tags -1 + ftbfs As can be seen on reproducible builds [1], this same error causes sarsen to FTBFS in unstable. [1] https://tests.reproducible-builds.org/debian/rb-pkg/sarsen.html

Bug#1042896: transition: armadillo

2023-08-30 Thread Graham Inggs
Control: tags -1 confirmed Hi Kumar On Wed, 30 Aug 2023 at 07:22, Kumar Appaiah wrote: > Thanks for the response. I have build the following packages > successfully using the new Armadillo: > > gdal > gnss-sdr > phyx > seer > tvc Great! > I could not build mlpack since the build failed, but I

Bug#1050832: sarsen: autopkgtest needs update for python-xarray 2023.08.0

2023-08-29 Thread Graham Inggs
Source: sarsen Version: 0.9.3+ds-2 User: debian...@lists.debian.org Usertags: needs-update Hi Maintainer Since the upload of python-xarray 2023.08.0-1, the autopkgtests of sarsen are failing [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://ci.debi

Bug#1043144: transition: mutter/gnome-shell 44

2023-08-28 Thread Graham Inggs
On Sun, 27 Aug 2023 at 18:21, Jeremy Bícha wrote: > This transition is done, but I think gnome-shell-extension-dashtodock > is popular enough that it's helpful to hint 87+really84-1 in sooner. I marked gnome-shell-extension-dashtodock urgent and it has migrated, thanks.

Bug#1050623: intake: autopkgtest needs update for dask 2023.8.0

2023-08-27 Thread Graham Inggs
Source: intake Version: 0.6.6-1 Severity: serious Tags: ftbfs User: debian...@lists.debian.org Usertags: needs-update Hi Maintainer Since the upload of dask 2023.8.0+dfsg-1, the autopkgtests of intake are failing [1]. I've copied what I hope is the relevant part of the log below. This same fail

Bug#1041982: transition: symfony 6

2023-08-26 Thread Graham Inggs
Hi David On Tue, 25 Jul 2023 at 11:57, David Prévot wrote: > Do you have a way to spot packages in Sid currently depending on > symfony (<< 6~) in order to file bugs and eventually provide patches? You could use a ben tracker for this. I've set up something basic [1]. Feel free to submit MRs in

Bug#1042048: python-ase: FTBFS: E: Build killed with signal TERM after 150 minutes of inactivity

2023-08-26 Thread Graham Inggs
Control: severity -1 important Control: tags -1 + unreproducible Hi Lucas I'm unable to reproduce this failure locally, also python-ase builds successfully on reproducible builds [1]. Regards Graham [1] https://tests.reproducible-builds.org/debian/rb-pkg/python-ase.html

Bug#1042896: transition: armadillo

2023-08-26 Thread Graham Inggs
Hi Kumar On Wed, 2 Aug 2023 at 13:48, Kumar Appaiah wrote: > I have uploaded the new Armadillo to experimental. I would like your > permission to upload it to unstable. binNMUs should be sufficient for > the reverse dependencies. Have you checked that all the reverse-build-dependencies build wit

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