Bug#990958: ITP: npinv -- finds inversions in long DNA segments post alignment

Package: wnpp Severity: wishlist Subject: ITP: npinv -- finds inversions in long DNA segments post alignment Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: npinv Version : 1.24+ds Upstream Author : haojingshao * URL : https://github.com

Bug#990883: ITP: surpyvor -- modification of VCF files with SURVIVOR

Package: wnpp Severity: wishlist Subject: ITP: surpyvor -- modification of VCF files with SURVIVOR Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: surpyvor Version : 0.5 Upstream Author : Wouter De Coster * URL : https://github.com/wdecoster

Bug#990856: ITP: tandem-genotypes -- compare lengths of duplications in DNA sequences

Package: wnpp Severity: wishlist Subject: ITP: tandem-genotypes -- compare lengths of duplications in DNA sequences Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: tandem-genotypes Version : 1.8.2 Upstream Author : Martin C. Frith * URL

Bug#990851: ITP: nano-snakemake -- detection of structural variants in genome sequencing data

Package: wnpp Severity: wishlist Subject: ITP: nano-snakemake -- detection of structural variants in genome sequencing data Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: nano-snakemake Version : 1.0+git20200224.ff11b35 Upstream Author : Wouter De

Bug#989868: ITP: illustrate -- cartoonish representations of large biological molecules

Package: wnpp Severity: wishlist Subject: ITP: illustrate -- cartoonish representations of large biological molecules Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: illustrate Version : 0.0+git20200923.217db48 Upstream Author : David S Goodsell * URL

Bug#983893: ITP: r-bioc-structuralvariantannotation -- Variant annotations for structural variants

Package: wnpp Severity: wishlist X-Debbugs-Cc: moel...@debian.org Subject: ITP: r-bioc-structuralvariantannotation -- Variant annotations for structural variants Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-structuralvariantannotation Version

Bug#983262: ITP: loguru -- enjoyable loggin' for Python

Package: wnpp Severity: wishlist X-Debbugs-Cc: moel...@debian.org Subject: ITP: loguru -- enjoyable loggin' for Python Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: loguru Version : 0.5.3 Upstream Author : Delgan * URL : https://githu

Bug#982544: ITP: bioawk --

Package: wnpp Severity: wishlist X-Debbugs-Cc: moel...@debian.org Subject: ITP: bioawk -- Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: bioawk Version : 1.0 Upstream Author : Lucent Technologies * URL : https://github.com/lh3/bioawk

Bug#981215: ITP: xphyle -- opening, reading, and writing files while agnostic to compression

Package: wnpp Severity: wishlist X-Debbugs-Cc: moel...@debian.org Subject: ITP: xphyle -- opening, reading, and writing files while agnostic to compression Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: xphyle Version : 4.4.1 Upstream Author : John P

Bug#981117: ITP: pokrok -- meta-api for progress bars

Package: wnpp Severity: wishlist X-Debbugs-Cc: moel...@debian.org Subject: ITP: pokrok -- meta-api for progress bars Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: pokrok Version : 0.2.0 Upstream Author : John Didion * URL : https

Bug#978085: RM: boinc-app-seti -- ROM; obsolete - SETT@home no longer exists

Package: ftp.debian.org Severity: normal X-Debbugs-Cc: moel...@debian.org The package should also be removed from o-o-stable, oldstable, stable, and testing. Thank you!

Bug#977115: ITP: q2-fragment-insertion -- QIIME 2 plugin for fragment insertion

Package: wnpp Severity: wishlist X-Debbugs-Cc: moel...@debian.org Subject: ITP: q2-fragment-insertion -- QIIME 2 plugin for fragment insertion Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: q2-fragment-insertion Version : 2020.11.1 Upstream Author

Bug#976863: ITP: q2-dada2 -- QIIME 2 plugin to work with adapters in sequence data

Package: wnpp Severity: wishlist X-Debbugs-Cc: moel...@debian.org Subject: ITP: q2-dada2 -- QIIME 2 plugin to work with adapters in sequence data Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: q2-dada2 Version : 2020.11.1 Upstream Author : QIIME 2

Bug#976840: ITP: r-bioc-gsva -- Gene Set Variation Analysis for microarray and RNA-seq data

Package: wnpp Severity: wishlist X-Debbugs-Cc: moel...@debian.org Subject: ITP: r-bioc-gsva -- Gene Set Variation Analysis for microarray and RNA-seq data Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-gsva Version : 1.38.0+ds Upstream Author

Bug#976837: ITP: r-bioc-gseabase -- Gene set enrichment data structures and methods

Package: wnpp Severity: wishlist X-Debbugs-Cc: moel...@debian.org Subject: ITP: r-bioc-gseabase -- Gene set enrichment data structures and methods Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-gseabase Version : 1.52.0 Upstream Author : Martin

Bug#976789: ITP: r-bioc-purecn -- copy number calling and SNV classification using targeted short read sequencing

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-purecn -- copy number calling and SNV classification using targeted short read sequencing Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-purecn Version : 1.20.0 Upstream Author : Markus

Bug#976265: ITP: q2-sample-classifier -- QIIME 2 plugin for machine learning prediction of sample data

Package: wnpp Severity: wishlist Subject: ITP: q2-sample-classifier -- QIIME 2 plugin for machine learning prediction of sample data Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: q2-sample-classifier Version : 2020.11.0 Upstream Author : , QIIME 2

Bug#976051: ITP: peptidebuilder -- generate atomic oligopeptide 3D structure from sequence

Package: wnpp Severity: wishlist Subject: ITP: peptidebuilder -- generate atomic oligopeptide 3D structure from sequence Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: peptidebuilder Version : 1.1.0 Upstream Author : Matthew ZTien * URL

Bug#975340: ITP: r-bioc-arrayexpress -- access to the ArrayExpress Microarray Database at EBI

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-arrayexpress -- access to the ArrayExpress Microarray Database at EBI Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-arrayexpress Version : 1.50.0 Upstream Author : Audrey Kauffmann * URL

Bug#975328: ITP: r-bioc-oligo -- Preprocessing tools for oligonucleotide arrays

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-oligo -- Preprocessing tools for oligonucleotide arrays Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-oligo Version : 1.54.1 Upstream Author : Benilton Carvalho * URL : https

Bug#975258: ITP: r-bioc-oligoclasses -- Classes for high-throughput arrays supported by oligo and crlmm

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-oligoclasses -- Classes for high-throughput arrays supported by oligo and crlmm Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-oligoclasses Version : 1.52.0 Upstream Author : Benilton Carvalho

Bug#975252: ITP: r-cran-ff -- Memory-Efficient Fast-Access Storage of Large Data

Package: wnpp Severity: wishlist Subject: ITP: r-cran-ff -- Memory-Efficient Fast-Access Storage of Large Data Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-ff Version : 4.0.4 Upstream Author : Daniel Adler * URL : https://cran.r

Bug#975245: ITP: r-bioc-affxparser -- Affymetrix File Parsing SDK

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-affxparser -- Affymetrix File Parsing SDK Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-affxparser Version : 1.62.0 Upstream Author : Henrik Bengtsson * URL : https

Bug#975071: ITP: scnapbar -- single-cell sequencing with the Nanopore

Package: wnpp Severity: wishlist Subject: ITP: scnapbar -- single-cell sequencing with the Nanopore Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: scnapbar Version : 1.0.0 Upstream Author : Qi Wang * URL : https://github.com/dieterich-lab

Bug#974420: ITP: nim-d3 -- foreign-function interface for d3.js

Package: wnpp Severity: wishlist Subject: ITP: nim-d3 -- foreign-function interface for d3.js Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: nim-d3 Version : 0.1.3 Upstream Author : Hitesh Jasani <@hiteshjasani> * URL : https://gith

Bug#973764: ITP: nim-kexpr -- kexpr math expressions for nim

Package: wnpp Severity: wishlist Subject: ITP: nim-kexpr -- kexpr math expressions for nim Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: nim-kexpr Version : 0.0.2 Upstream Author : Brent Pedersen <@brentp> * URL : https://github.com/

Bug#973753: ITP: nim-lapper -- simple, fast interval searches for nim

Package: wnpp Severity: wishlist Subject: ITP: nim-lapper -- simple, fast interval searches for nim Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: nim-lapper Version : 0.1.6+git20200609.d82bbc7 Upstream Author : Brent S. Pedersen * URL

Bug#973658: ITP: mosdepth -- BAM/CRAM depth calculation biological sequencing

Package: wnpp Severity: wishlist Subject: ITP: mosdepth -- BAM/CRAM depth calculation biological sequencing Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: mosdepth Version : 0.3.1 Upstream Author : Brent Pedersen * URL : https://github.com

Bug#973650: ITP: hts-nim-tools -- tools biological sequences: bam-filter, count-reads, vcf-check

Package: wnpp Severity: wishlist Subject: ITP: hts-nim-tools -- tools biological sequences: bam-filter, count-reads, vcf-check Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: hts-nim-tools Version : 0.2.0 Upstream Author : Brent Pedersen <@brentp>

Bug#973649: ITP: --

Package: wnpp Severity: wishlist Subject: ITP: -- Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: Version : Upstream Author : * URL : * License : Programming Lang: (C, C++, C#, Perl, Python, etc.) Description : Remark

Bug#973510: ITP: nim-hts -- wrapper for hts C library

Package: wnpp Severity: wishlist Subject: ITP: nim-hts -- wrapper for hts C library Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: nim-hts Version : 0.3.12 Upstream Author : Brent Pedersen * URL : https://github.com/brentp/hts-nim * License

Bug#971632: ITP: r-bioc-noiseq -- Exploratory analysis and differential expression for RNA-seq

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-noiseq -- Exploratory analysis and differential expression for RNA-seq Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-noiseq Version : 2.31.0 Upstream Author : Sonia Tarazona * URL

Bug#970887: ITP: scanpy -- Single-Cell Analysis in Python

Package: wnpp Severity: wishlist Subject: ITP: scanpy -- Single-Cell Analysis in Python Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: scanpy Version : 1.6.0 Upstream Author : F. Alexander Wolf * URL : https://github.com/theislab/scanpy

Bug#970572: ITP: preseq -- determine redundancy in RNAseq experiments

Package: wnpp Severity: wishlist Subject: ITP: preseq -- determine redundancy in RNAseq experiments Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: preseq Version : 3.0.2 Upstream Author : Timothy Daley * URL : http://smithlabresearch.org

Bug#970416: ITP: pbmm2 -- minimap2 SMRT wrapper for PacBio data

Package: wnpp Severity: wishlist Subject: ITP: pbmm2 -- minimap2 SMRT wrapper for PacBio data Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: pbmm2 Version : 1.3.0 Upstream Author : , Pacific Biosciences of California, Inc. * URL : https

Bug#970300: ITP: r-cran-hdf5r -- Interface to the 'HDF5' Binary Data Format

Package: wnpp Severity: wishlist Subject: ITP: r-cran-hdf5r -- Interface to the 'HDF5' Binary Data Format Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-hdf5r Version : 1.3.3 Upstream Author : Holger Hoefling * URL : http

Bug#970255: ITP: r-cran-immunarch -- Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

Package: wnpp Severity: wishlist Subject: ITP: r-cran-immunarch -- Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-immunarch Version : 0.6.5 Upstream Author : Vadim I. Nazarov * URL

Bug#970192: ITP: clark -- accurate and versatile classification of biological sequences

Package: wnpp Severity: wishlist Subject: ITP: clark -- accurate and versatile classification of biological sequences Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: clark Version : 1.2.6.1 Upstream Author : Rachid Ounit * URL : http

Bug#970126: ITP: r-cran-argparser -- Command-Line Argument Parser

Package: wnpp Severity: wishlist Subject: ITP: r-cran-argparser -- Command-Line Argument Parser Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-argparser Version : 0.6 Upstream Author : David J. H. Shih * URL : https://cran.r

Bug#970097: ITP: r-bioc-dupradar -- Assessment of duplication rates in RNA-Seq datasets

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-dupradar -- Assessment of duplication rates in RNA-Seq datasets Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-dupradar Version : 1.18.0 Upstream Author : Sergi Sayols * URL

Bug#970094: ITP: r-cran-ragg -- Graphic Devices Based on AGG

Package: wnpp Severity: wishlist Subject: ITP: r-cran-ragg -- Graphic Devices Based on AGG Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-ragg Version : 0.3.1 Upstream Author : Thomas Lin Pedersen * URL : https://cran.r-project.org

Bug#970092: ITP: r-cran-downlit -- Syntax Highlighting and Automatic Linking

Package: wnpp Severity: wishlist Subject: ITP: r-cran-downlit -- Syntax Highlighting and Automatic Linking Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-downlit Version : 0.1.0 Upstream Author : Hadley Wickham, RStudio * URL : https

Bug#970060: ITP: r-cran-pkgdown -- Make Static HTML Documentation for a Package

Package: wnpp Severity: wishlist Subject: ITP: r-cran-pkgdown -- Make Static HTML Documentation for a Package Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-pkgdown Version : 1.6.0 Upstream Author : Hadley Wickham * URL : https

Bug#970058: ITP: r-cran-ggseqlogo -- ggplot2 Extension for Publication-Ready Sequence Logos

Package: wnpp Severity: wishlist Subject: ITP: r-cran-ggseqlogo -- ggplot2 Extension for Publication-Ready Sequence Logos Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-ggseqlogo Version : 0.1 Upstream Author : Omar Wagih * URL

Bug#970057: ITP: r-cran-ggseqlogo -- ggplot2 Extension for Publication-Ready Sequence Logos

Package: wnpp Severity: wishlist Subject: ITP: r-cran-ggseqlogo -- ggplot2 Extension for Publication-Ready Sequence Logos Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-ggseqlogo Version : 0.1 Upstream Author : Omar Wagih * URL

Bug#970056: ITP: r-cran-ggalluvial -- Alluvial Plots in 'ggplot2'

Package: wnpp Severity: wishlist Subject: ITP: r-cran-ggalluvial -- Alluvial Plots in 'ggplot2' Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-ggalluvial Version : 0.12.2 Upstream Author : Jason Cory Brunson * URL : http

Bug#970053: ITP: r-cran-upsetr -- A More Scalable Alternative to Venn and Euler Diagrams for

Package: wnpp Severity: wishlist Subject: ITP: r-cran-upsetr -- A More Scalable Alternative to Venn and Euler Diagrams for Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-upsetr Version : 1.4.0 Upstream Author : Jake Conway, * URL

Bug#970034: ITP: r-cran-factoextra -- Extract and Visualize the Results of Multivariate Data Analyses

Package: wnpp Severity: wishlist Subject: ITP: r-cran-factoextra -- Extract and Visualize the Results of Multivariate Data Analyses Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-factoextra Version : 1.0.7 Upstream Author : Alboukadel Kassambara

Bug#970033: ITP: r-cran-dtplyr -- Data Table Back-End for 'dplyr'

Package: wnpp Severity: wishlist Subject: ITP: r-cran-dtplyr -- Data Table Back-End for 'dplyr' Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-dtplyr Version : 1.0.1 Upstream Author : Lionel Henry * URL : https://cran.r-p

Bug#970032: ITP: r-cran-airr -- AIRR Data Representation Reference Library

Package: wnpp Severity: wishlist Subject: ITP: r-cran-airr -- AIRR Data Representation Reference Library Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-airr Version : 1.3.0 Upstream Author : Jason Vander Heiden * URL : https://cran.r

Bug#970004: ITP: r-bioc-scran -- Methods for Single-Cell RNA-Seq Data Analysis

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-scran -- Methods for Single-Cell RNA-Seq Data Analysis Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-scran Version : 1.16.0 Upstream Author : Aaron Lun * URL : https

Bug#970002: ITP: r-bioc-singler -- Reference-Based Single-Cell RNA-Seq Annotation

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-singler -- Reference-Based Single-Cell RNA-Seq Annotation Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-singler Version : 1.2.4 Upstream Author : Dvir Aran * URL : https

Bug#969904: ITP: libwww-curl-simple-perl -- Simpler interface to WWW::Curl

Package: wnpp Severity: wishlist Subject: ITP: libwww-curl-simple-perl -- Simpler interface to WWW::Curl Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: libwww-curl-simple-perl Version : 0.100191 Upstream Author : Copyright: , Andreas Marienborg * URL

Bug#969760: ITP: r-bioc-dropletutils -- Utilities for Handling Single-Cell Droplet Data

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-dropletutils -- Utilities for Handling Single-Cell Droplet Data Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-dropletutils Version : 1.8.0 Upstream Author : Aaron Lun * URL

Bug#969734: ITP: r-other-rajewsky-dropbead -- dropbead

Package: wnpp Severity: wishlist Subject: ITP: r-other-rajewsky-dropbead -- dropbead Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-other-rajewsky-dropbead Version : 0.3.1+git20180221.d746c6f+ds Upstream Author : Nikos Karaiskos * URL

Bug#969619: ITP: hnswlib -- fast approximate nearest neighbor search

Package: wnpp Severity: wishlist Subject: ITP: hnswlib -- fast approximate nearest neighbor search Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: hnswlib Version : 0.4.0 Upstream Author : Copyright: Yury Malkov * URL : https://github.com

Bug#969558: ITP: mcaller -- find methylation in nanopore reads

Package: wnpp Severity: wishlist Subject: ITP: mcaller -- find methylation in nanopore reads Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: mcaller Version : 0.3+git20200621.90f6389 Upstream Author : al-mcintyre * URL : https://github.com/al

Bug#969532: ITP: joypy -- ridgeline-/joyplots plotting routine

Package: wnpp Severity: wishlist Subject: ITP: joypy -- ridgeline-/joyplots plotting routine Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: joypy Version : 0.2.2 Upstream Author : Leonardo Taccari * URL : https://github.com/sbebo/joypy

Bug#969527: dh-make: prepare for team maintenance

Package: dh-make Version: 2.202002 Severity: wishlist Dear Maintainer, I am a huge fan of dh_make. Most packages I package for a team. For team-maintained packages, my NAME goes to the Uploaders line and the team's mailing list is the maintainer. This is something I keep forgetting to adjus

Bug#969509: ITP: nanocomp -- compare multiple runs of long biological sequences

Package: wnpp Severity: wishlist Subject: ITP: nanocomp -- compare multiple runs of long biological sequences Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: nanocomp Version : 1.12.0 Upstream Author : Copyright: * URL : https://github.com

Bug#969499: ITP: nanostat -- statistics on long biological sequences

Package: wnpp Severity: wishlist Subject: ITP: nanostat -- statistics on long biological sequences Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: nanostat Version : 1.4.0 Upstream Author : Copyright: Wouter De Coster * URL : https

Bug#969061: ITP: r-bioc-genomicfiles -- Distributed computing by file or by range

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-genomicfiles -- Distributed computing by file or by range Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-genomicfiles Version : 1.24.0 Upstream Author : Valerie Obenchain * URL

Bug#969060: ITP: r-bioc-scater -- Single-Cell Analysis Toolkit for Gene Expression Data in R

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-scater -- Single-Cell Analysis Toolkit for Gene Expression Data in R Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-scater Version : 1.16.2 Upstream Author : Davis McCarthy * URL

Bug#969049: ITP: r-bioc-singlecellexperiment -- S4 Classes for Single Cell Data

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-singlecellexperiment -- S4 Classes for Single Cell Data Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-singlecellexperiment Version : 1.10.1+ds Upstream Author : Copyright: (FIXME: year)-2020

Bug#968944: libjs-jquery-datatables-extensions: vfs_fonts.js not redistributed

Package: libjs-jquery-datatables-extensions Version: 0.0+git20150910.28fd64e+dfsg-3 Severity: normal Dear Maintainer, * What led up to the situation? When using pandoc this somehow senses the need to work with fonts and bails out since the file vfs_fonts.js is not found in the build folder.

Bug#966553: ITP: r-bioc-hdf5array -- HDF5 backend for DelayedArray objects

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-hdf5array -- HDF5 backend for DelayedArray objects Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-hdf5array Version : 1.16.0 Upstream Author : Hervé Pagès * URL : https

Bug#966550: ITP: r-bioc-biocneighbors -- Nearest Neighbor Detection for Bioconductor Packages

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-biocneighbors -- Nearest Neighbor Detection for Bioconductor Packages Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-biocneighbors Version : 1.6.0 Upstream Author : Aaron Lun * URL

Bug#966547: ITP: r-bioc-delayedmatrixstats -- Functions on Rows and Columns of 'DelayedMatrix' Objects

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-delayedmatrixstats -- Functions on Rows and Columns of 'DelayedMatrix' Objects Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-delayedmatrixstats Version : 1.10.0 Upstream Author : Pe

Bug#966546: ITP: r-cran-rcpphnsw -- R bindings for a Library for Approximate Nearest Neighbors

Package: wnpp Severity: wishlist Subject: ITP: r-cran-rcpphnsw -- R bindings for a Library for Approximate Nearest Neighbors Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-rcpphnsw Version : 0.2.0 Upstream Author : James Melville * URL

Bug#966445: ITP: r-bioc-experimenthub -- Client to access ExperimentHub resources

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-experimenthub -- Client to access ExperimentHub resources Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-experimenthub Version : 1.14.0+ds Upstream Author : Bioconductor Package Maintainer

Bug#965347: ITP: xenium -- concurrent data structures and memory reclamation algorithms

Package: wnpp Severity: wishlist Subject: ITP: xenium -- concurrent data structures and memory reclamation algorithms Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: xenium Version : 0.0+git20200603.5336adf Upstream Author : Manuel Pöter * URL

Bug#965272: ITP: xxsds-dynamic -- header files for libdynamic1

Package: wnpp Severity: wishlist Subject: ITP: xxsds-dynamic -- header files for libdynamic1 Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: xxsds-dynamic Version : 1.0~alpha.1 Upstream Author : lan Kuhnle * URL : https://github.com/xxsds

Bug#964345: ITP: nanoplot -- plotting scripts for long read sequencing data

Package: wnpp Severity: wishlist Subject: ITP: nanoplot -- plotting scripts for long read sequencing data Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: nanoplot Version : 1.30.1 Upstream Author : Wouter De Coster * URL : https://github.com

Bug#964191: ITP: rosa -- Removal of Spurious Antisense in biological RNA sequences

Package: wnpp Severity: wishlist Subject: ITP: rosa -- Removal of Spurious Antisense in biological RNA sequences Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: rosa Version : 1.0 Upstream Author : University of Dundee, UK * URL : https

Bug#964057: ITP: readerwriterqueue -- single-producer, single-consumer lock-free queue for C++

Package: wnpp Severity: wishlist Subject: ITP: readerwriterqueue -- single-producer, single-consumer lock-free queue for C++ Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: readerwriterqueue Version : 1.0.2 Upstream Author : Cameron Desrochers * URL

Bug#963992: ITP: concurrentqueue -- industrial-strength lock-free queue for C++

Package: wnpp Severity: wishlist Subject: ITP: concurrentqueue -- industrial-strength lock-free queue for C++ Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: concurrentqueue Version : 1.0.1 Upstream Author : , Cameron Desrochers * URL : https

Bug#963829: ITP: libatomicqueue -- devel files for C++ atomic_queue library

Package: wnpp Severity: wishlist Subject: ITP: libatomicqueue -- devel files for C++ atomic_queue library Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: libatomicqueue Version : 0.0 Upstream Author : Maxim Egorushkin * URL : https

Bug#963803: ITP: nf-core-artic -- nf-core ARTIC field bioinformatics RNA-seq pipeline

Package: wnpp Severity: wishlist Subject: ITP: nf-core-artic -- nf-core ARTIC field bioinformatics RNA-seq pipeline Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: nf-core-artic Version : 0.0+git20200324.9edd884 Upstream Author : International consortium

Bug#963758: ITP: plasmidid -- mapping-based, assembly-assisted plasmid identification tool

Package: wnpp Severity: wishlist Subject: ITP: plasmidid -- mapping-based, assembly-assisted plasmid identification tool Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: plasmidid Version : 1.6.3 Upstream Author : Luis Sian, Miguel Julia, Pedro Scampoy

Bug#963718: ITP: mmmulti -- header files for mmmulti library

Package: wnpp Severity: wishlist Subject: ITP: mmmulti -- header files for mmmulti library Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: mmmulti Version : 0.1 Upstream Author : Erik Garrison * URL : https://github.com/ekg/mmmulti * License

Bug#963618: ITP: quast -- Quality Assessment Tool for Genome Assemblies

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: quast Version : 5.0.2 * URL : https://github.com/ablab/quast * License : GPL-2.0 Programming Lang: Python Description : Quality Assessment Tool for Genome Assemblies This package is

Bug#963028: ITP: pychopper -- identify, orient and trim full-length Nanopore cDNA reads

Package: wnpp Severity: wishlist Subject: ITP: pychopper -- identify, orient and trim full-length Nanopore cDNA reads Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: pychopper Version : 2.4.0 Upstream Author : Oxford Nanopore Technologies Ltd. * URL

Bug#963015: ITP: pyranges -- 2D representation of genomic intervals and their annotations

Package: wnpp Severity: wishlist Subject: ITP: pyranges -- 2D representation of genomic intervals and their annotations Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: pyranges Version : 0.0.58 Upstream Author : Endre Bakken Stovner * URL

Bug#962991: ITP: r-bioc-beachmat -- I/O for several formats storing matrix data

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-beachmat -- I/O for several formats storing matrix data Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-beachmat Version : 2.4.0+ds Upstream Author : Aaron Lun * URL : https

Bug#962966: ITP: scrappie -- basecaller for Nanopore sequencer

Package: wnpp Severity: wishlist Subject: ITP: scrappie -- basecaller for Nanopore sequencer Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: scrappie Version : 1.4.2 Upstream Author : Copyright: * URL : https://github.com/nanoporetech

Bug#962834: bcftools: Have dependency on Perl demoted to "recommended"

Package: bcftools Version: 1.10.2-2 Severity: wishlist Dear Maintainer, The tools in bcftools that depend on Perl are only of secondary interest. For an improved efficiency in cloud and docker setups, please demote the dependency on Perl to a mere recommendation. Other executables of bcftools d

Bug#962760: ITP: biocore-ntnu-ncls -- datastructure for interval overlap queries

Package: wnpp Severity: wishlist Subject: ITP: biocore-ntnu-ncls -- datastructure for interval overlap queries Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: biocore-ntnu-ncls Version : 0.0+git20200225.f9894b0 Upstream Author : Endre Bakken Stovner * URL

Bug#962717: ITP: q2-quality-control -- QIIME 2 plugin for quality assurance of feature and sequence data

Package: wnpp Severity: wishlist Owner: Steffen Moeller * Package name: q2-quality-control Version : 2020.2.0 * URL : https://github.com/qiime2/q2-quality-control * License : BSD-3-Clause Programming Lang: Python Description : QIIME 2 plugin for quality

Bug#962661: ITP: r-bioc-grohmm -- GRO-seq Analysis Pipeline

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-grohmm -- GRO-seq Analysis Pipeline Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-grohmm Version : 1.22.0 Upstream Author : Charles G. Danko, Minho Chae, Andre Martins, W. Lee Kraus * URL

Bug#962657: ITP: r-bioc-rsubread -- Subread Sequence Alignment and Counting for R

Package: wnpp Severity: wishlist Subject: ITP: r-bioc-rsubread -- Subread Sequence Alignment and Counting for R Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-bioc-rsubread Version : 2.2.2 Upstream Author : Wei Shi * URL : https

Bug#962484: ITP: deblur -- deconvolution for Illumina amplicon sequencing

Package: wnpp Severity: wishlist Subject: ITP: deblur -- deconvolution for Illumina amplicon sequencing Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: deblur Version : 1.1.0 Upstream Author : , Deblur development team * URL : https

Bug#962438: ITP: pore-c -- processing data from an ONT poreC run

Package: wnpp Severity: wishlist Subject: ITP: pore-c -- processing data from an ONT poreC run Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: pore-c Version : 0.2.0~rc1 Upstream Author : Copyright: Matthew Pendleton * URL : https

Bug#962400: ITP: nanosv -- structural variant caller for nanopore data

Package: wnpp Severity: wishlist Subject: ITP: nanosv -- structural variant caller for nanopore data Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: nanosv Version : 1.2.4 Upstream Author : Markus J van Roosmalen * URL : https://github.com

Bug#962373: ITP: picopore -- lossless compression of Nanopore files

Package: wnpp Severity: wishlist Subject: ITP: picopore -- lossless compression of Nanopore files Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: picopore Version : 1.2.0 Upstream Author : Copyright: Scott Gigante * URL : https://github.com

Bug#962283: boinc: 7.16.15 was erroneously tagged as a release

Package: boinc Version: 7.16.15+dfsg-1 Severity: important Bug report to self - to prevent transition to testing Version 7.16.15 was erroneously tagged by upstream. It is not an official release. -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (500, 'uns

Bug#961375: ITP: quicktree -- Neighbor-Joining algorithm for phylogenies

Package: wnpp Severity: wishlist Subject: ITP: quicktree -- Neighbor-Joining algorithm for phylogenies Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: quicktree Version : 2.5 Upstream Author : Kevin Howe * URL : https://github.com/khowe

Bug#960685: ITP: r-cran-lsd -- Lots of Superior Depictions

Package: wnpp Severity: wishlist Subject: ITP: r-cran-lsd -- Lots of Superior Depictions Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-lsd Version : 4.0 Upstream Author : Bjoern Schwalb, * URL : https://cran.r-project.org/package=LSD

Bug#959728: rmarkdown: css, fonts, etc missing

Package: r-cran-rmarkdown Version: 2.1+dfsg-2 Severity: normal Dear Maintainer, * What led up to the situation? Tests in nascent package pigx-rnaseq. * What was the outcome of this action? This error message in the log file while running /usr/bin/Rscript --vanilla /home/moeller/gi

Bug#958713: ITP: r-cran-markovchain -- Easy Handling Discrete Time Markov Chains

Package: wnpp Severity: wishlist Subject: ITP: r-cran-markovchain -- Easy Handling Discrete Time Markov Chains Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-markovchain Version : 0.8.2 Upstream Author : Giorgio Alfredo Spedicato * URL

Bug#958705: ITP: r-cran-dqrng -- Fast Pseudo Random Number Generators

Package: wnpp Severity: wishlist Subject: ITP: r-cran-dqrng -- Fast Pseudo Random Number Generators Package: wnpp Owner: Steffen Moeller Severity: wishlist * Package name: r-cran-dqrng Version : 0.2.1 Upstream Author : Copyright: (FIXME: year)-2019 Ralf Stubner, * URL

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