Package: ugene Severity: normal Tags: patch User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu kinetic ubuntu-patch
Dear Maintainer, ugene 40.1+dfsg-1 fails to build on Ubuntu. * Fix for non-constant SIGSTKSZ (LP: #1970417) * Build on amd64 only. Thanks for considering the patch. -- System Information: Debian Release: bookworm/sid APT prefers jammy-updates APT policy: (500, 'jammy-updates'), (500, 'jammy-security'), (500, 'jammy') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.15.0-27-generic (SMP w/32 CPU threads) Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled
diff -Nru ugene-40.1+dfsg/debian/control ugene-40.1+dfsg/debian/control --- ugene-40.1+dfsg/debian/control 2021-10-19 12:55:46.000000000 +0200 +++ ugene-40.1+dfsg/debian/control 2022-04-26 14:25:30.000000000 +0200 @@ -1,9 +1,9 @@ Source: ugene -Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> +Maintainer: Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Uploaders: Steffen Moeller <moel...@debian.org>, Andreas Tille <ti...@debian.org>, Olivier Sallou <osal...@debian.org> -Section: non-free/science +Section: multiverse/science XS-Autobuild: yes Priority: optional Build-Depends: qtbase5-dev, @@ -30,7 +30,7 @@ Rules-Requires-Root: no Package: ugene -Architecture: any +Architecture: amd64 Depends: ${shlibs:Depends}, ugene-data, ${misc:Depends} diff -Nru ugene-40.1+dfsg/debian/patches/Fix-for-non-constant-SIGSTKSZ.patch ugene-40.1+dfsg/debian/patches/Fix-for-non-constant-SIGSTKSZ.patch --- ugene-40.1+dfsg/debian/patches/Fix-for-non-constant-SIGSTKSZ.patch 1970-01-01 01:00:00.000000000 +0100 +++ ugene-40.1+dfsg/debian/patches/Fix-for-non-constant-SIGSTKSZ.patch 2022-04-26 14:24:36.000000000 +0200 @@ -0,0 +1,32 @@ +From: David Faure <david.fa...@kdab.com> +Date: Wed, 15 Dec 2021 22:26:40 +0100 +Subject: [PATCH] Fix for non-constant SIGSTKSZ + +On glibc > 2.33, `SIGSTKSZ` might not be constant (in which case +it expands to a call to `sysconf` which returns a `long int`); see +https://sourceware.org/pipermail/libc-alpha/2020-October/118513.html + +Pass unsigned explicitly to std::max, to avoid relying on template +argument deduction. This works both with the old-style constant +`SIGSTKSZ` and the new configurable one. + +Initially based on https://chromium-review.googlesource.com/c/2776379 + +Change-Id: I9fc95337f973e871b84735ce822b5e11ba73ea8c +Reviewed-on: https://chromium-review.googlesource.com/c/breakpad/breakpad/+/3340721 +Reviewed-by: Mark Mentovai <m...@chromium.org> +--- + src/client/linux/handler/exception_handler.cc | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +--- a/src/libs_3rdparty/breakpad/src/client/linux/handler/exception_handler.cc ++++ b/src/libs_3rdparty/breakpad/src/client/linux/handler/exception_handler.cc +@@ -141,7 +141,7 @@ + // SIGSTKSZ may be too small to prevent the signal handlers from overrunning + // the alternative stack. Ensure that the size of the alternative stack is + // large enough. +- static const unsigned kSigStackSize = std::max(16384, SIGSTKSZ); ++ const unsigned kSigStackSize = std::max<unsigned>(16384, SIGSTKSZ); + + // Only set an alternative stack if there isn't already one, or if the current + // one is too small. diff -Nru ugene-40.1+dfsg/debian/patches/series ugene-40.1+dfsg/debian/patches/series --- ugene-40.1+dfsg/debian/patches/series 2021-10-19 12:55:46.000000000 +0200 +++ ugene-40.1+dfsg/debian/patches/series 2022-04-26 14:25:30.000000000 +0200 @@ -3,3 +3,4 @@ do_not_build_phylip.patch # only partly addressed by upstream use_debian_sqlite.patch +Fix-for-non-constant-SIGSTKSZ.patch