Package: python-skbio Version: 0.5.8-2 Severity: normal scipy 1.10 is now available in experimental. python-skbio fails debci tests using it.
We are considering uploading scipy 1.10 to unstable in order to included it in the forthcoming stable release. If we proceed with that, then this bug will become Severity: serious. The errors are ImportError: cannot import name 'PearsonRConstantInputWarning' A sample from the failing test log is ___________ ERROR collecting skbio/alignment/tests/test_pairwise.py ____________ ImportError while importing test module '/tmp/autopkgtest-lxc.8bdh466m/downtmp/autopkgtest_tmp/skbio/alignment/tests/test_pairwise.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) skbio/__init__.py:11: in <module> import skbio.io # noqa skbio/io/__init__.py:248: in <module> import_module('skbio.io.format.lsmat') /usr/lib/python3.11/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) skbio/io/format/lsmat.py:77: in <module> from skbio.stats.distance import DissimilarityMatrix, DistanceMatrix skbio/stats/distance/__init__.py:197: in <module> from ._mantel import mantel, pwmantel skbio/stats/distance/_mantel.py:16: in <module> from scipy.stats import PearsonRConstantInputWarning E ImportError: cannot import name 'PearsonRConstantInputWarning' from 'scipy.stats' (/usr/lib/python3/dist-packages/scipy/stats/__init__.py)