Source: examl Version: 3.0.22-4 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20240313 ftbfs-trixie ftbfs-impfuncdef
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. This is most likely caused by a change in dpkg 1.22.6, that enabled -Werror=implicit-function-declaration. For more information, see https://wiki.debian.org/qa.debian.org/FTBFS#A2024-03-13_-Werror.3Dimplicit-function-declaration Relevant part (hopefully): > make[2]: Entering directory '/<<PKGBUILDDIR>>/examl' > rm -f *.o examl-avx2 > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c > In function ‘initializePartitions’, > inlined from ‘initializeTree’ at axml.c:2217:3, > inlined from ‘main’ at axml.c:2631:5: > axml.c:2121:40: warning: argument 1 range [18446744071562067968, > 18446744073709551615] exceeds maximum object size 9223372036854775807 > [-Walloc-size-larger-than=] > 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, > sizeof(unsigned long)); > | > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > In file included from axml.c:44: > /usr/include/stdlib.h: In function ‘main’: > /usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ > declared here > 556 | extern void *calloc (size_t __nmemb, size_t __size) > | ^~~~~~ > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -D_OPTIMIZED_FUNCTIONS > -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 > -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o > evaluatePartialGenericSpecial.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c > mpicc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mavx2 -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c > quartets.c: In function ‘computeQuartets’: > quartets.c:393:31: error: implicit declaration of function ‘basename’; did > you mean ‘rename’? [-Werror=implicit-function-declaration] > 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); > | ^~~~~~~~ > | rename > quartets.c:393:31: warning: passing argument 2 of ‘strcat’ makes pointer from > integer without a cast [-Wint-conversion] > 393 | strcat(quartetFileName, basename(ckp.quartetFileName)); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > | | > | int > In file included from /usr/include/features.h:490, > from > /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, > from /usr/include/limits.h:26, > from /usr/lib/gcc/x86_64-linux-gnu/13/include/limits.h:205, > from /usr/lib/gcc/x86_64-linux-gnu/13/include/syslimits.h:7, > from /usr/lib/gcc/x86_64-linux-gnu/13/include/limits.h:34, > from quartets.c:36: > /usr/include/x86_64-linux-gnu/bits/string_fortified.h:128:1: note: expected > ‘const char * restrict’ but argument is of type ‘int’ > 128 | __NTH (strcat (char *__restrict __dest, const char *__restrict __src)) > | ^~~~~ > cc1: some warnings being treated as errors > make[2]: *** [<builtin>: quartets.o] Error 1 The full build log is available from: http://qa-logs.debian.net/2024/03/13/examl_3.0.22-4_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240313;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240313&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
