Package: src:python-rioxarray Version: 0.19.0-1 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, your package failed to build. Below you will find how the build ends (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202509/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you could not reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:python-rioxarray, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray * Building wheel... /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: Apache Software License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib/rioxarray copying rioxarray/rioxarray.py -> build/lib/rioxarray copying rioxarray/exceptions.py -> build/lib/rioxarray copying rioxarray/_io.py -> build/lib/rioxarray copying rioxarray/_options.py -> build/lib/rioxarray copying rioxarray/xarray_plugin.py -> build/lib/rioxarray copying rioxarray/crs.py -> build/lib/rioxarray copying rioxarray/raster_writer.py -> build/lib/rioxarray copying rioxarray/merge.py -> build/lib/rioxarray copying rioxarray/raster_dataset.py -> build/lib/rioxarray copying rioxarray/raster_array.py -> build/lib/rioxarray copying rioxarray/_show_versions.py -> build/lib/rioxarray copying rioxarray/__init__.py -> build/lib/rioxarray running egg_info creating rioxarray.egg-info writing rioxarray.egg-info/PKG-INFO writing dependency_links to rioxarray.egg-info/dependency_links.txt writing entry points to rioxarray.egg-info/entry_points.txt writing requirements to rioxarray.egg-info/requires.txt writing top-level names to rioxarray.egg-info/top_level.txt writing manifest file 'rioxarray.egg-info/SOURCES.txt' reading manifest file 'rioxarray.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*' found under directory 'test' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' no previously-included directories found matching 'docs' adding license file 'LICENSE' adding license file 'LICENSE_datacube' adding license file 'LICENSE_xarray' adding license file 'AUTHORS.rst' writing manifest file 'rioxarray.egg-info/SOURCES.txt' copying rioxarray/py.typed -> build/lib/rioxarray installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/rioxarray copying build/lib/rioxarray/rioxarray.py -> build/bdist.linux-x86_64/wheel/./rioxarray copying build/lib/rioxarray/exceptions.py -> build/bdist.linux-x86_64/wheel/./rioxarray copying build/lib/rioxarray/_io.py -> build/bdist.linux-x86_64/wheel/./rioxarray copying build/lib/rioxarray/_options.py -> build/bdist.linux-x86_64/wheel/./rioxarray copying build/lib/rioxarray/xarray_plugin.py -> build/bdist.linux-x86_64/wheel/./rioxarray copying build/lib/rioxarray/py.typed -> build/bdist.linux-x86_64/wheel/./rioxarray copying build/lib/rioxarray/crs.py -> build/bdist.linux-x86_64/wheel/./rioxarray copying build/lib/rioxarray/raster_writer.py -> build/bdist.linux-x86_64/wheel/./rioxarray copying build/lib/rioxarray/merge.py -> build/bdist.linux-x86_64/wheel/./rioxarray copying build/lib/rioxarray/raster_dataset.py -> build/bdist.linux-x86_64/wheel/./rioxarray copying build/lib/rioxarray/raster_array.py -> build/bdist.linux-x86_64/wheel/./rioxarray copying build/lib/rioxarray/_show_versions.py -> build/bdist.linux-x86_64/wheel/./rioxarray copying build/lib/rioxarray/__init__.py -> build/bdist.linux-x86_64/wheel/./rioxarray running install_egg_info Copying rioxarray.egg-info to build/bdist.linux-x86_64/wheel/./rioxarray-0.19.0.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/rioxarray-0.19.0.dist-info/WHEEL creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/.tmp-s2ogz_17/rioxarray-0.19.0-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'rioxarray/__init__.py' adding 'rioxarray/_io.py' adding 'rioxarray/_options.py' adding 'rioxarray/_show_versions.py' adding 'rioxarray/crs.py' adding 'rioxarray/exceptions.py' adding 'rioxarray/merge.py' adding 'rioxarray/py.typed' adding 'rioxarray/raster_array.py' adding 'rioxarray/raster_dataset.py' adding 'rioxarray/raster_writer.py' adding 'rioxarray/rioxarray.py' adding 'rioxarray/xarray_plugin.py' adding 'rioxarray-0.19.0.dist-info/licenses/AUTHORS.rst' adding 'rioxarray-0.19.0.dist-info/licenses/LICENSE' adding 'rioxarray-0.19.0.dist-info/licenses/LICENSE_datacube' adding 'rioxarray-0.19.0.dist-info/licenses/LICENSE_xarray' adding 'rioxarray-0.19.0.dist-info/METADATA' adding 'rioxarray-0.19.0.dist-info/WHEEL' adding 'rioxarray-0.19.0.dist-info/entry_points.txt' adding 'rioxarray-0.19.0.dist-info/top_level.txt' adding 'rioxarray-0.19.0.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built rioxarray-0.19.0-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build; python3.13 -m pytest -k "not test_clip_geojson__no_drop and not test_clip_geojson and not test_interpolate_na and not test_merge_datasets and not test_open_rasterio_mask_chunk_clip and not test_to_raster__different_dtype and not test_nonstandard_dims_write_coordinate_system__projected_ft" ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.1, pluggy-1.6.0 rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build configfile: pyproject.toml plugins: cov-5.0.0, timeout-2.3.1, typeguard-4.4.4 collected 495 items / 44 deselected / 451 selected test/integration/test_integration__io.py ............................... [ 6%] ..Fatal Python error: Segmentation fault Current thread 0x00007f9ebf32f6c0 (most recent call first): Garbage-collecting File "/usr/lib/python3/dist-packages/xarray/backends/file_manager.py", line 234 in close File "/usr/lib/python3/dist-packages/xarray/backends/file_manager.py", line 250 in __del__ File "/usr/lib/python3/dist-packages/dask/order.py", line 267 in _with_offset File "/usr/lib/python3/dist-packages/dask/order.py", line 284 in order File "/usr/lib/python3/dist-packages/dask/_task_spec.py", line 981 in execute_graph File "/usr/lib/python3/dist-packages/dask/_task_spec.py", line 171 in _execute_subgraph File "/usr/lib/python3/dist-packages/dask/_task_spec.py", line 745 in __call__ File "/usr/lib/python3/dist-packages/dask/local.py", line 229 in execute_task File "/usr/lib/python3/dist-packages/dask/local.py", line 243 in batch_execute_tasks File "/usr/lib/python3.13/concurrent/futures/thread.py", line 59 in run File "/usr/lib/python3.13/concurrent/futures/thread.py", line 93 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap Thread 0x00007f9ebfb306c0 (most recent call first): File "/usr/lib/python3.13/concurrent/futures/thread.py", line 90 in _worker File "/usr/lib/python3.13/threading.py", line 994 in run File "/usr/lib/python3.13/threading.py", line 1043 in _bootstrap_inner File "/usr/lib/python3.13/threading.py", line 1014 in _bootstrap Thread 0x00007f9ed4222100 (most recent call first): File "/usr/lib/python3.13/threading.py", line 359 in wait File "/usr/lib/python3.13/queue.py", line 199 in get File "/usr/lib/python3/dist-packages/dask/local.py", line 140 in queue_get File "/usr/lib/python3/dist-packages/dask/local.py", line 505 in get_async File "/usr/lib/python3/dist-packages/dask/threaded.py", line 91 in get File "/usr/lib/python3/dist-packages/dask/base.py", line 660 in compute File "/usr/lib/python3/dist-packages/dask/base.py", line 372 in compute File "/usr/lib/python3/dist-packages/dask/array/core.py", line 1876 in __bool__ File "/usr/lib/python3/dist-packages/xarray/core/duck_array_ops.py", line 346 in allclose_or_equiv File "/usr/lib/python3/dist-packages/xarray/testing/assertions.py", line 51 in _data_allclose_or_equiv File "/usr/lib/python3/dist-packages/xarray/testing/assertions.py", line 240 in compat_variable File "/usr/lib/python3/dist-packages/xarray/testing/assertions.py", line 248 in assert_allclose File "/usr/lib/python3/dist-packages/xarray/testing/assertions.py", line 32 in wrapper File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/integration/test_integration__io.py", line 502 in _check_raster File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build/test/integration/test_integration__io.py", line 519 in test_band_as_variable File "/usr/lib/python3/dist-packages/_pytest/python.py", line 157 in pytest_pyfunc_call File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1671 in runtest File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 178 in pytest_runtest_call File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 246 in <lambda> File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 344 in from_call File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 245 in call_and_report File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 136 in runtestprotocol File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 117 in pytest_runtest_protocol File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ File "/usr/lib/python3/dist-packages/_pytest/main.py", line 367 in pytest_runtestloop File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ File "/usr/lib/python3/dist-packages/_pytest/main.py", line 343 in _main File "/usr/lib/python3/dist-packages/_pytest/main.py", line 289 in wrap_session File "/usr/lib/python3/dist-packages/_pytest/main.py", line 336 in pytest_cmdline_main File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 121 in _multicall File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 512 in __call__ File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175 in main File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 201 in console_main File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 9 in <module> File "<frozen runpy>", line 88 in _run_code File "<frozen runpy>", line 198 in _run_module_as_main Extension modules: rasterio._err, rasterio._filepath, raster [too-long-redacted] , netCDF4._netCDF4 (total: 111) Segmentation fault E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=139: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_rioxarray/build; python3.13 -m pytest -k "not test_clip_geojson__no_drop and not test_clip_geojson and not test_interpolate_na and not test_merge_datasets and not test_open_rasterio_mask_chunk_clip and not test_to_raster__different_dtype and not test_nonstandard_dims_write_coordinate_system__projected_ft" dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 returned exit code 13 make: *** [debian/rules:20: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 --------------------------------------------------------------------------------
