Package: tophat Version: 2.0.8-1 Severity: important Tophat 2.0.8-1 has bad procedure of checking bowtie version, so id doesn't work with bowtie 2.1.0. This bug was fixed in the upstream in version 2.0.8b. Please, update the package from the upstream.
-- System Information: Debian Release: 6.0.7 APT prefers oldstable-updates APT policy: (500, 'oldstable-updates'), (500, 'oldstable'), (400, 'testing'), (100, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Kernel: Linux 3.2.0-3-amd64 (SMP w/6 CPU cores) Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages tophat depends on: ii bowtie 1.0.0-3 ultrafast memory-efficient short r ii bowtie2 2.1.0-1 ultrafast memory-efficient short r ii dpkg 1.15.8.13 Debian package management system ii libboost-thread1.49.0 1.49.0-3.2 portable C++ multi-threading ii libc6 2.13-38 Embedded GNU C Library: Shared lib ii libgcc1 1:4.7.2-5 GCC support library ii libstdc++6 4.7.2-5 GNU Standard C++ Library v3 ii python 2.7.3-4 interactive high-level object-orie ii zlib1g 1:1.2.3.4.dfsg-3 compression library - runtime tophat recommends no packages. Versions of packages tophat suggests: ii bowtie 1.0.0-3 ultrafast memory-efficient short r pn cufflinks <none> (no description available) -- no debconf information -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
