Just an FYI: I successfully programmed an Arduino Due (SAM ARM-based) using the Debian-packaged version of the Arduino IDE. The board support information is now controlled through the "Boards Manager" feature, which will independently install support into the ~/.arduino15 folder regardless of what the Debian package comes with.

That said, this bug is probably still valid for ADK devices. I don't own one of those boards to test.

Ryan

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