Hi Edmund,
thanks for this helpful bug report. I have commited patches in jessie
branch.
Charles, I'm not sure how you want to deal with this. I'd regard the
issue RC and it should be uploaded. However, I'm not really sure how
you want to deal with the git repository and thus I simply
Le Sun, Dec 14, 2014 at 09:22:44AM +0100, Andreas Tille a écrit :
Charles, I'm not sure how you want to deal with this. I'd regard the
issue RC and it should be uploaded. However, I'm not really sure how
you want to deal with the git repository and thus I simply commited the
new branch and
Hi Charles,
On Mon, Dec 15, 2014 at 03:34:09AM +0900, Charles Plessy wrote:
on my side, since in Jessie we still have the old SAMtools, and since most NGS
applications using the libbam have not been migrated to the HTSlib, I would
not
consider portability issues RC for Jessie. This would
This has been fixed upstream, in
https://github.com/samtools/htslib/commit/14a4a81f67a122f7bb2e87e5fa070aa270b0aec5
Thanks,
John
--
The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in
Source: htslib
Version: 1.1-1
The code looks like this:
faidx_t *fai_build_core(BGZF *bgzf)
{
char c, *name;
...
while ( (c=bgzf_getc(bgzf))=0 ) {
Clearly on architectures where plain char is unsigned (arm64, armhf,
...) this won't work (infinite loop).
I'd suggest changing the type of
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