Source: pytables
Severity: normal
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Dear Maintainer,
Over in Ubuntu, we've started the transition to Python 3.5. Currently
3.4 is still the default, with 3.5 as a supported version. This
required an update to pytables 3.2.1, the latest upstream release.
Attached is a diff which enables 3.2.1 along with all the build
changes necessary to pass the test suite, etc. I've also included an
example changelog entry.
- -- System Information:
Debian Release: stretch/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 4.1.0-1-amd64 (SMP w/1 CPU core)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
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=== modified file 'debian/changelog'
--- debian/changelog 2014-08-15 07:37:41 +0000
+++ debian/changelog 2015-08-12 22:59:21 +0000
@@ -1,3 +1,25 @@
+pytables (3.2.1-1) UNRELEASED; urgency=medium
+
+ * New upstream release.
+ * Fixes Python 3.5 support. (LP: #1478146)
+ * Quilt patches updated:
+ - Deleted:
+ + 0003-Better-control-of-verbosity-in-unittests.patch
+ + 0006-fix-an-import-issue-with-cython-newer-than-0.20.2.patch
+ + 0007-Temporay-desable-tests-that-use-the-lz4-conpressor.patch
+ - Refreshed:
+ + 0001-use-dynamic-lib.patch
+ + 0002-Use-system-compression-libs.patch
+ + 0004-Never-use-the-msse2-flag-explicitly.patch
+ + 0005-Do-not-fetch-icons-for-external-web-sites.patch
+ * debian/control:
+ - Add to Build-Depends: python{,3}-setuptools, locales
+ - Bump Standards-Version to 3.9.6.
+ * debian/rules: Run the test suites under en_US.UTF-8 locale.
+ * debian/python-tables{,-doc}.docs: It's README.rst now.
+
+ -- Barry Warsaw <ba...@ubuntu.com> Tue, 11 Aug 2015 18:11:30 -0400
+
pytables (3.1.1-3) unstable; urgency=medium
* New patch:
=== modified file 'debian/control'
--- debian/control 2014-08-04 21:29:17 +0000
+++ debian/control 2015-08-12 22:17:00 +0000
@@ -1,12 +1,13 @@
Source: pytables
Section: python
Priority: optional
-Maintainer: Debian Science Maintainers <debian-science-maintain...@lists.alioth.debian.org>
+Maintainer: Ubuntu Developers <ubuntu-devel-disc...@lists.ubuntu.com>
+XSBC-Original-Maintainer: Debian Science Maintainers <debian-science-maintain...@lists.alioth.debian.org>
Uploaders: Antonio Valentino <antonio.valent...@tiscali.it>, Yaroslav Halchenko <deb...@onerussian.com>
Homepage: http://www.pytables.org
Vcs-Git: git://anonscm.debian.org/debian-science/packages/pytables.git
Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-science/packages/pytables.git
-Standards-Version: 3.9.5
+Standards-Version: 3.9.6
X-Python-Version: >= 2.6
X-Python3-Version: >= 3.2
Build-Depends: debhelper (>= 9.0.0),
@@ -24,6 +25,8 @@
python-numexpr-dbg,
python3-numexpr,
python3-numexpr-dbg,
+ python-setuptools,
+ python3-setuptools,
cython (>= 0.13),
cython-dbg,
cython3,
@@ -33,6 +36,7 @@
liblz4-dev (>= 0.0~r114),
libsnappy-dev,
libbz2-dev,
+ locales (>= 0),
python-sphinx (>= 1.0.7+dfsg),
texlive-latex-recommended,
texlive-latex-extra,
=== modified file 'debian/patches/0001-use-dynamic-lib.patch'
--- debian/patches/0001-use-dynamic-lib.patch 2014-04-12 19:02:49 +0000
+++ debian/patches/0001-use-dynamic-lib.patch 2015-08-11 22:22:23 +0000
@@ -13,11 +13,9 @@
setup.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
-diff --git a/setup.py b/setup.py
-index 0f2f3f7..555e3dc 100755
--- a/setup.py
+++ b/setup.py
-@@ -302,7 +302,7 @@ class Package(object):
+@@ -327,7 +327,7 @@
class PosixPackage(Package):
_library_prefixes = ['lib']
=== modified file 'debian/patches/0002-Use-system-compression-libs.patch'
--- debian/patches/0002-Use-system-compression-libs.patch 2014-04-12 19:02:49 +0000
+++ debian/patches/0002-Use-system-compression-libs.patch 2015-08-11 22:22:18 +0000
@@ -9,11 +9,9 @@
setup.py | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
-diff --git a/setup.py b/setup.py
-index 555e3dc..d9e2ef6 100755
--- a/setup.py
+++ b/setup.py
-@@ -725,14 +725,15 @@ if 'BLOSC' not in optional_libs:
+@@ -735,14 +735,15 @@
# Blosc + BloscLZ sources
blosc_files += glob.glob('c-blosc/blosc/*.c')
# LZ4 sources
=== modified file 'debian/patches/0004-Never-use-the-msse2-flag-explicitly.patch'
--- debian/patches/0004-Never-use-the-msse2-flag-explicitly.patch 2014-04-12 19:02:49 +0000
+++ debian/patches/0004-Never-use-the-msse2-flag-explicitly.patch 2015-08-11 22:17:08 +0000
@@ -6,16 +6,14 @@
setup.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
-diff --git a/setup.py b/setup.py
-index d9e2ef6..ab55629 100755
--- a/setup.py
+++ b/setup.py
-@@ -752,7 +752,7 @@ if 'BLOSC' not in optional_libs:
+@@ -762,7 +762,7 @@
finally:
os.remove(fd.name)
-- if compiler_has_flags(compiler, ["-msse2"]):
-+ if False and compiler_has_flags(compiler, ["-msse2"]):
- print("Setting compiler flag '-msse2'")
- CFLAGS.append("-msse2")
- else:
+- try_flags = ["-march=native", "-msse2"]
++ try_flags = ["-march=native"]
+ for ff in try_flags:
+ if compiler_has_flags(compiler, [ff]):
+ print("Setting compiler flag: " + ff)
=== modified file 'debian/patches/0005-Do-not-fetch-icons-for-external-web-sites.patch'
--- debian/patches/0005-Do-not-fetch-icons-for-external-web-sites.patch 2014-04-12 19:02:49 +0000
+++ debian/patches/0005-Do-not-fetch-icons-for-external-web-sites.patch 2015-08-11 22:22:11 +0000
@@ -6,11 +6,9 @@
doc/source/conf.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
-diff --git a/doc/source/conf.py b/doc/source/conf.py
-index 3a1d04b..51eade8 100644
--- a/doc/source/conf.py
+++ b/doc/source/conf.py
-@@ -182,7 +182,7 @@ html_static_path = ['_static']
+@@ -194,7 +194,7 @@
# Custom sidebar templates, maps document names to template names.
html_sidebars = {
'index': ['globaltoc.html', 'relations.html', 'sourcelink.html',
=== added file 'debian/patches/0008-Fix-setitem-return-value.patch'
--- debian/patches/0008-Fix-setitem-return-value.patch 1970-01-01 00:00:00 +0000
+++ debian/patches/0008-Fix-setitem-return-value.patch 2015-08-12 22:13:11 +0000
@@ -0,0 +1,24 @@
+Description: Clear the exception set by PyArray_SETITEM() before raising a
+ TypeError. Without this, the test suite will raise a SystemError.
+Author: Barry Warsaw <ba...@ubuntu.com>
+Bug: https://github.com/PyTables/PyTables/issues/486
+
+--- a/tables/tableextension.pyx
++++ b/tables/tableextension.pyx
+@@ -40,7 +40,7 @@
+
+ # numpy functions & objects
+ from hdf5extension cimport Leaf
+-from cpython cimport PY_MAJOR_VERSION
++from cpython cimport PY_MAJOR_VERSION, PyErr_Clear
+ from libc.stdio cimport snprintf
+ from libc.stdlib cimport malloc, free
+ from libc.string cimport memcpy, strdup, strcmp, strlen
+@@ -1596,6 +1596,7 @@
+ if field.ndim == 1:
+ ret = PyArray_SETITEM(field, field.data + offset * self._stride, value)
+ if ret < 0:
++ PyErr_Clear()
+ raise TypeError
+ ##### End of optimization for scalar values
+ else:
=== modified file 'debian/patches/series'
--- debian/patches/series 2014-08-15 07:37:41 +0000
+++ debian/patches/series 2015-08-12 19:31:23 +0000
@@ -1,7 +1,5 @@
0001-use-dynamic-lib.patch
0002-Use-system-compression-libs.patch
-0003-Better-control-of-verbosity-in-unittests.patch
0004-Never-use-the-msse2-flag-explicitly.patch
0005-Do-not-fetch-icons-for-external-web-sites.patch
-0006-fix-an-import-issue-with-cython-newer-than-0.20.2.patch
-0007-Temporay-desable-tests-that-use-the-lz4-conpressor.patch
+0008-Fix-setitem-return-value.patch
=== modified file 'debian/python-tables-doc.docs'
--- debian/python-tables-doc.docs 2013-01-28 10:02:57 +0000
+++ debian/python-tables-doc.docs 2015-08-12 20:37:58 +0000
@@ -1,4 +1,4 @@
ANNOUNCE.txt
-README.txt
+README.rst
RELEASE_NOTES.txt
THANKS
=== modified file 'debian/python-tables.docs'
--- debian/python-tables.docs 2012-01-22 22:18:32 +0000
+++ debian/python-tables.docs 2015-08-12 21:11:25 +0000
@@ -1,3 +1,3 @@
-README.txt
+README.rst
THANKS
VERSION
=== modified file 'debian/rules'
--- debian/rules 2014-08-04 21:29:17 +0000
+++ debian/rules 2015-08-12 15:49:51 +0000
@@ -95,17 +95,28 @@
dh_numpy3
# using override_dh_auto_test causes problems for dbg versions
ifeq (,$(findstring nocheck,$(DEB_BUILD_OPTIONS)))
+ # https://github.com/PyTables/PyTables/issues/485
+ mkdir -p $(CURDIR)/tmp-locales
+ localedef -i /usr/share/i18n/locales/en_US -c -f UTF-8 \
+ -A /usr/share/locale/locale.alias \
+ $(CURDIR)/tmp-locales/en_US.UTF-8
set -e -x; \
for py in $(PY2VERS); do \
cd $(CURDIR)/build/lib.*-$$py; \
- env PYTHONPATH=. python$$py tables/tests/test_all.py -vvv; \
+ env PYTHONPATH=. \
+ LOCPATH=$(CURDIR)/tmp-locales LC_ALL=en_US.UTF-8 \
+ python$$py tables/tests/test_all.py -vvv; \
cd $(CURDIR)/debian/tmp/usr/lib/python$$py/dist-packages; \
- env PYTHONPATH=. python$$py-dbg tables/tests/test_all.py -vvv; \
+ env PYTHONPATH=. \
+ LOCPATH=$(CURDIR)/tmp-locales LC_ALL=en_US.UTF-8 \
+ python$$py-dbg tables/tests/test_all.py -vvv; \
done
set -e -x; \
for py in $(PY3VERS); do \
cd $(CURDIR)/build/lib.*-$$py; \
- env PYTHONPATH=. python$$py tables/tests/test_all.py -vvv; \
+ env PYTHONPATH=. \
+ LOCPATH=$(CURDIR)/tmp-locales LC_ALL=en_US.UTF-8 \
+ python$$py tables/tests/test_all.py -vvv; \
#cd $(CURDIR)/debian/tmp/usr/lib/python3/dist-packages; \
#env PYTHONPATH=. python$$py-dbg tables/tests/test_all.py -vvv; \
done
